Wall clock time and date at job start Tue Mar 31 2020 21:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47332 * 2 1 4 4 C 1.38573 * 111.00152 * 296.74361 * 3 2 1 5 5 N 1.31222 * 126.46881 * 306.51093 * 4 3 2 6 6 N 1.28530 * 109.85788 * 179.82249 * 5 4 3 7 7 C 1.30293 * 110.05370 * 0.45249 * 6 5 4 8 8 C 1.50703 * 126.34572 * 179.76500 * 7 6 5 9 9 C 1.53004 * 109.47090 * 275.44003 * 8 7 6 10 10 H 1.09000 * 109.46608 * 54.32927 * 9 8 7 11 11 O 1.42894 * 109.47283 * 294.33075 * 9 8 7 12 12 C 1.50705 * 109.47005 * 174.32827 * 9 8 7 13 13 H 1.07993 * 119.99996 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99607 * 180.02562 * 12 9 8 15 15 N 1.31515 * 120.00398 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99902 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46724 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47052 * 119.99839 * 16 14 12 19 19 H 1.48494 * 109.47135 * 240.00089 * 16 14 12 20 20 N 1.36453 * 126.47642 * 126.81972 * 4 3 2 21 21 C 1.46498 * 127.13450 * 359.97438 * 20 4 3 22 22 C 1.53002 * 109.46703 * 265.11034 * 21 20 4 23 23 C 1.46901 * 111.00108 * 172.78775 * 3 2 1 24 24 H 1.08999 * 109.52045 * 179.08041 * 23 3 2 25 25 C 1.53176 * 109.52274 * 299.26606 * 23 3 2 26 26 C 1.53176 * 109.03686 * 176.88774 * 25 23 3 27 27 C 1.53095 * 109.16523 * 303.02019 * 26 25 23 28 28 O 1.42911 * 109.41057 * 57.60475 * 27 26 25 29 29 C 1.42899 * 114.09925 * 298.84524 * 28 27 26 30 30 H 1.08997 * 109.47270 * 55.37367 * 1 2 3 31 31 H 1.09009 * 109.47143 * 295.37228 * 1 2 3 32 32 H 1.09003 * 109.47341 * 175.37756 * 1 2 3 33 33 H 1.09005 * 109.47605 * 120.00423 * 2 1 3 34 34 H 1.09001 * 109.47219 * 240.00244 * 2 1 3 35 35 H 1.08997 * 109.47764 * 35.44506 * 8 7 6 36 36 H 1.09004 * 109.47012 * 155.44659 * 8 7 6 37 37 H 0.96703 * 113.99830 * 304.42598 * 11 9 8 38 38 H 0.96992 * 120.00294 * 180.02562 * 15 14 12 39 39 H 1.08991 * 109.47467 * 25.11164 * 21 20 4 40 40 H 1.09003 * 109.47211 * 145.11619 * 21 20 4 41 41 H 1.09000 * 109.47006 * 185.04148 * 22 21 20 42 42 H 1.09001 * 109.47387 * 305.04450 * 22 21 20 43 43 H 1.09005 * 109.46972 * 65.04592 * 22 21 20 44 44 H 1.09001 * 109.54958 * 296.75584 * 25 23 3 45 45 H 1.09002 * 109.54334 * 57.02311 * 25 23 3 46 46 H 1.09005 * 109.52229 * 183.11899 * 26 25 23 47 47 H 1.08993 * 109.57673 * 62.96137 * 26 25 23 48 48 H 1.09005 * 109.47948 * 297.63249 * 27 26 25 49 49 H 1.08993 * 109.49223 * 177.59618 * 27 26 25 50 50 H 1.08994 * 109.48210 * 301.17358 * 29 28 27 51 51 H 1.09004 * 109.48339 * 181.14390 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6364 2.0472 -1.1553 5 7 1.8439 1.6487 -2.3882 6 7 1.3526 2.5041 -3.2121 7 6 0.8155 3.4956 -2.5594 8 6 0.1404 4.7005 -3.1624 9 6 1.1938 5.7536 -3.5119 10 1 1.9566 5.3068 -4.1495 11 8 1.7998 6.2378 -2.3119 12 6 0.5374 6.8981 -4.2404 13 1 -0.5246 6.8762 -4.4350 14 6 1.2931 7.9725 -4.6594 15 7 2.5866 7.9989 -4.4229 16 14 0.4796 9.3914 -5.5618 17 1 -0.9741 9.1212 -5.7006 18 1 0.6792 10.6463 -4.7932 19 1 1.0869 9.5343 -6.9093 20 7 0.9771 3.2399 -1.2259 21 6 0.5339 4.0731 -0.1054 22 6 -0.9250 3.7505 0.2241 23 6 3.4779 1.4277 0.1722 24 1 3.8168 2.4635 0.1523 25 6 3.8539 0.7905 1.5134 26 6 5.3797 0.7705 1.6467 27 6 5.9784 0.0158 0.4568 28 8 5.5646 0.6419 -0.7594 29 6 4.1499 0.6477 -0.9608 30 1 -0.3633 0.5839 -0.8456 31 1 -0.3634 0.4404 0.9286 32 1 -0.3634 -1.0243 -0.0828 33 1 1.8934 -0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 -0.3916 4.4045 -4.0665 36 1 -0.5665 5.1178 -2.4451 37 1 1.1702 6.5881 -1.6669 38 1 3.1181 8.7549 -4.7173 39 1 1.1565 3.8711 0.7661 40 1 0.6207 5.1248 -0.3781 41 1 -1.2820 4.4313 0.9969 42 1 -1.5342 3.8665 -0.6722 43 1 -0.9980 2.7236 0.5826 44 1 3.4244 1.3741 2.3276 45 1 3.4711 -0.2293 1.5526 46 1 5.6578 0.2686 2.5735 47 1 5.7588 1.7923 1.6580 48 1 5.6315 -1.0175 0.4700 49 1 7.0661 0.0351 0.5239 50 1 3.7792 -0.3772 -0.9661 51 1 3.9204 1.1224 -1.9148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650308459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:58 Heat of formation + Delta-G solvation = -35.004064 kcal Electronic energy + Delta-G solvation = -31806.803547 eV Core-core repulsion = 27741.927628 eV Total energy + Delta-G solvation = -4064.875919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.04430 -40.97527 -38.43491 -37.99541 -36.51798 -34.30153 -34.24552 -33.06935 -32.36918 -31.52136 -30.37576 -28.95175 -27.27020 -26.06006 -25.10389 -24.50907 -24.16445 -23.47607 -21.74177 -21.35083 -20.47586 -19.14941 -18.28979 -17.86383 -17.28862 -17.19450 -16.74784 -16.65844 -16.46072 -16.16675 -15.89472 -15.61881 -15.25601 -15.18566 -14.88717 -14.71250 -14.44236 -14.01692 -13.95354 -13.68406 -13.38739 -13.24946 -13.23181 -13.06348 -12.90544 -12.78039 -12.62953 -12.53569 -12.47569 -12.39513 -12.20933 -11.99531 -11.89228 -11.78901 -11.56876 -11.35402 -11.26360 -10.97392 -10.79137 -10.71742 -10.46156 -9.87237 -9.62354 -8.13419 -6.40207 0.76020 1.29684 1.41808 1.43957 1.55736 1.78502 2.40264 2.53929 2.99345 3.13230 3.42106 3.55560 3.63550 3.71275 3.89431 3.90584 3.97891 4.03789 4.09473 4.12916 4.18069 4.21600 4.31871 4.41677 4.46594 4.51082 4.51821 4.55793 4.63312 4.68633 4.70489 4.79224 4.82066 4.88904 4.94455 4.95190 4.99574 5.02962 5.11804 5.17198 5.21879 5.26624 5.28999 5.56858 5.61509 5.64865 5.70059 6.02816 6.17059 6.28729 6.71445 7.32217 7.50878 7.74392 8.91723 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014895 B = 0.003269 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.340853 B = 8563.688636 C = 9447.607527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.050 3.950 3 N -0.438 5.438 4 C 0.341 3.659 5 N -0.345 5.345 6 N -0.341 5.341 7 C 0.209 3.791 8 C -0.046 4.046 9 C 0.244 3.756 10 H 0.008 0.992 11 O -0.575 6.575 12 C -0.580 4.580 13 H 0.072 0.928 14 C 0.025 3.975 15 N -0.903 5.903 16 Si 0.963 3.037 17 H -0.257 1.257 18 H -0.278 1.278 19 H -0.285 1.285 20 N -0.451 5.451 21 C 0.100 3.900 22 C -0.156 4.156 23 C 0.064 3.936 24 H 0.063 0.937 25 C -0.103 4.103 26 C -0.149 4.149 27 C 0.045 3.955 28 O -0.408 6.408 29 C 0.038 3.962 30 H 0.020 0.980 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.039 0.961 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.355 0.645 38 H 0.260 0.740 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.110 0.890 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.105 0.895 50 H 0.066 0.934 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 -15.946 19.909 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 N -0.165 5.165 4 C -0.016 4.016 5 N -0.189 5.189 6 N -0.181 5.181 7 C -0.060 4.060 8 C -0.086 4.086 9 C 0.186 3.814 10 H 0.026 0.974 11 O -0.379 6.379 12 C -0.618 4.618 13 H 0.090 0.910 14 C -0.178 4.178 15 N -0.540 5.540 16 Si 0.788 3.212 17 H -0.180 1.180 18 H -0.204 1.204 19 H -0.212 1.212 20 N -0.143 5.143 21 C -0.021 4.021 22 C -0.214 4.214 23 C -0.044 4.044 24 H 0.081 0.919 25 C -0.141 4.141 26 C -0.187 4.187 27 C -0.031 4.031 28 O -0.327 6.327 29 C -0.040 4.040 30 H 0.039 0.961 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.142 0.858 34 H 0.057 0.943 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.200 0.800 38 H 0.069 0.931 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.129 0.871 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.123 0.877 50 H 0.084 0.916 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.361 -16.588 18.730 25.131 hybrid contribution -0.596 1.502 -0.456 1.679 sum -2.957 -15.087 18.274 23.881 Atomic orbital electron populations 1.21741 0.93898 1.02610 1.01548 1.22437 0.96837 0.85273 1.03031 1.59222 1.12386 1.17212 1.27678 1.22461 0.99226 0.88213 0.91742 1.74357 1.21659 1.24327 0.98563 1.73907 1.14986 1.02317 1.26891 1.25092 1.01509 0.98829 0.80587 1.20891 0.98110 0.88617 1.00979 1.19072 0.89474 0.89592 0.83295 0.97369 1.86628 1.38738 1.82841 1.29736 1.22014 0.95622 1.04956 1.39195 0.91004 1.25944 0.95020 1.01252 0.95545 1.70251 1.07022 1.31232 1.45484 0.85458 0.79270 0.78677 0.77844 1.18017 1.20412 1.21162 1.46453 1.42450 1.17583 1.07782 1.22151 0.98342 0.94664 0.86947 1.22101 0.92785 1.03601 1.02872 1.22394 0.83950 1.00328 0.97722 0.91893 1.21714 0.96213 1.02138 0.94033 1.22192 0.94810 1.01870 0.99846 1.22942 1.00876 0.96110 0.83203 1.87974 1.21899 1.80733 1.42069 1.23268 0.81413 1.00379 0.98936 0.96107 0.90473 0.89901 0.85823 0.94270 0.88817 0.87980 0.79985 0.93112 0.87244 0.88696 0.87645 0.92978 0.91623 0.88941 0.89148 0.87133 0.92037 0.91588 0.87668 0.91582 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.92 71.98 0.71 -1.85 16 2 C 0.05 0.97 4.77 86.30 0.41 1.38 16 3 N -0.44 -10.63 4.55 -681.62 -3.10 -13.73 16 4 C 0.34 11.30 4.87 260.11 1.27 12.57 16 5 N -0.35 -14.09 9.81 -58.01 -0.57 -14.66 16 6 N -0.34 -15.57 12.18 -49.54 -0.60 -16.17 16 7 C 0.21 8.44 7.11 137.64 0.98 9.42 16 8 C -0.05 -1.84 5.14 29.85 0.15 -1.69 16 9 C 0.24 12.46 2.81 29.85 0.08 12.55 16 10 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 11 O -0.57 -28.74 12.16 -148.98 -1.81 -30.55 16 12 C -0.58 -30.95 8.79 25.60 0.22 -30.73 16 13 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 14 C 0.02 1.37 5.40 84.65 0.46 1.83 16 15 N -0.90 -54.67 12.84 21.45 0.28 -54.39 16 16 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 17 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 19 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 20 N -0.45 -14.87 2.81 -514.86 -1.45 -16.31 16 21 C 0.10 2.40 6.48 86.38 0.56 2.96 16 22 C -0.16 -2.79 10.24 71.98 0.74 -2.06 16 23 C 0.06 1.57 2.40 45.00 0.11 1.68 16 24 H 0.06 1.91 8.11 -2.39 -0.02 1.89 16 25 C -0.10 -1.52 5.19 30.71 0.16 -1.36 16 26 C -0.15 -2.07 6.14 30.68 0.19 -1.88 16 27 C 0.04 0.79 6.84 72.01 0.49 1.28 16 28 O -0.41 -11.80 10.77 -148.98 -1.60 -13.40 16 29 C 0.04 1.11 5.35 72.01 0.38 1.50 16 30 H 0.02 0.51 7.17 -2.39 -0.02 0.50 16 31 H 0.08 1.16 8.12 -2.38 -0.02 1.14 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.12 1.53 5.92 -2.38 -0.01 1.51 16 34 H 0.04 0.92 6.42 -2.39 -0.02 0.90 16 35 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 36 H 0.10 3.39 7.70 -2.38 -0.02 3.37 16 37 H 0.35 14.57 7.78 -74.06 -0.58 13.99 16 38 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 39 H 0.11 2.31 8.11 -2.39 -0.02 2.29 16 40 H 0.09 2.36 6.35 -2.39 -0.02 2.35 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.06 8.05 -2.39 -0.02 1.04 16 43 H 0.06 1.14 8.12 -2.38 -0.02 1.12 16 44 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 0.98 6.13 -2.39 -0.01 0.96 16 46 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.07 1.68 6.42 -2.39 -0.02 1.66 16 51 H 0.07 2.62 6.10 -2.38 -0.01 2.61 16 Total: -1.00 -77.41 397.27 0.44 -76.97 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.36 Total: 31.81 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 6.92 Total: 5.59 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -5.44 Total: -115.27 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -3.41 Total: -43.95 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -77.41 0.44 -76.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650308459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.964 kcal (2) G-P(sol) polarization free energy of solvation -77.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds