Wall clock time and date at job start Tue Mar 31 2020 21:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00020 * 2 1 4 4 N 1.46510 * 109.47022 * 125.00083 * 3 2 1 5 5 C 1.34769 * 119.99839 * 179.97438 * 4 3 2 6 6 O 1.21587 * 120.00358 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99880 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00243 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46964 * 59.99648 * 8 7 5 10 10 C 1.53000 * 109.47067 * 299.99783 * 8 7 5 11 11 C 1.50698 * 109.47299 * 179.97438 * 8 7 5 12 12 O 1.21287 * 120.00234 * 144.99808 * 11 8 7 13 13 N 1.34783 * 120.00120 * 325.00073 * 11 8 7 14 14 C 1.46498 * 120.00214 * 180.02562 * 13 11 8 15 15 C 1.52997 * 109.47070 * 179.97438 * 14 13 11 16 16 H 1.08994 * 112.91116 * 43.74800 * 15 14 13 17 17 C 1.53787 * 113.61251 * 175.00109 * 15 14 13 18 18 C 1.53779 * 87.07963 * 139.97890 * 17 15 14 19 19 H 1.08999 * 113.61062 * 219.93155 * 18 17 15 20 20 N 1.46502 * 113.61301 * 89.11687 * 18 17 15 21 21 C 1.36941 * 119.99707 * 155.00239 * 20 18 17 22 22 H 1.07994 * 120.00121 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99604 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99466 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00191 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46876 * 90.00533 * 25 23 21 27 27 H 1.48495 * 109.47268 * 210.00274 * 25 23 21 28 28 H 1.48497 * 109.47290 * 330.00740 * 25 23 21 29 29 C 1.53779 * 87.08402 * 334.56577 * 18 17 15 30 30 H 1.08002 * 119.99442 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00469 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.99442 * 179.97438 * 2 1 3 33 33 H 1.08992 * 109.47592 * 5.00067 * 3 2 1 34 34 H 1.09000 * 109.47311 * 244.99581 * 3 2 1 35 35 H 0.96995 * 119.99500 * 359.97438 * 4 3 2 36 36 H 0.97001 * 119.99963 * 359.97438 * 7 5 4 37 37 H 1.09003 * 109.46674 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.47092 * 299.99841 * 9 8 7 39 39 H 1.08996 * 109.47050 * 60.00459 * 9 8 7 40 40 H 1.09000 * 109.46850 * 299.99804 * 10 8 7 41 41 H 1.09000 * 109.46663 * 59.99860 * 10 8 7 42 42 H 1.08995 * 109.46769 * 179.97438 * 10 8 7 43 43 H 0.96997 * 119.99499 * 359.97438 * 13 11 8 44 44 H 1.08998 * 109.46965 * 59.99571 * 14 13 11 45 45 H 1.09003 * 109.46664 * 299.99726 * 14 13 11 46 46 H 1.08997 * 113.61028 * 254.52850 * 17 15 14 47 47 H 1.08998 * 113.61447 * 25.34385 * 17 15 14 48 48 H 0.96996 * 120.00397 * 334.99617 * 20 18 17 49 49 H 0.97008 * 119.99061 * 179.97438 * 24 23 21 50 50 H 1.09002 * 113.61557 * 270.88569 * 29 18 17 51 51 H 1.09004 * 113.61501 * 139.97990 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 3.7790 2.4085 1.3329 6 8 3.7157 3.3574 0.5754 7 7 4.6352 2.4329 2.3735 8 6 5.4884 3.6034 2.5928 9 6 4.6128 4.8400 2.8054 10 6 6.3849 3.8171 1.3715 11 6 6.3450 3.3793 3.8123 12 8 7.4757 3.8168 3.8479 13 7 5.8547 2.6927 4.8633 14 6 6.6872 2.4753 6.0490 15 6 5.8976 1.6752 7.0869 16 1 5.3466 0.8420 6.6509 17 6 6.7239 1.2871 8.3244 18 6 5.4740 1.6059 9.1616 19 1 5.6948 2.1186 10.0979 20 7 4.5779 0.4605 9.3379 21 6 3.7395 0.4071 10.4194 22 1 3.7392 1.2092 11.1425 23 6 2.8907 -0.6785 10.5867 24 7 2.0853 -0.7300 11.6264 25 14 2.8917 -2.0663 9.3362 26 1 3.8830 -3.0956 9.7400 27 1 1.5401 -2.6781 9.2747 28 1 3.2530 -1.5284 8.0001 29 6 5.0498 2.5507 8.0249 30 1 -0.5399 0.9354 -0.0004 31 1 -0.5401 -0.9352 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3587 2.1316 0.0896 34 1 2.6214 1.4026 -0.9313 35 1 3.0446 0.5746 1.7356 36 1 4.6860 1.6757 2.9776 37 1 5.2477 5.7110 2.9682 38 1 3.9930 5.0023 1.9236 39 1 3.9742 4.6878 3.6755 40 1 7.0086 2.9362 1.2201 41 1 5.7650 3.9794 0.4898 42 1 7.0193 4.6883 1.5346 43 1 4.9504 2.3432 4.8350 44 1 6.9734 3.4376 6.4734 45 1 7.5829 1.9216 5.7674 46 1 7.0080 0.2351 8.3473 47 1 7.5625 1.9563 8.5170 48 1 4.5783 -0.2601 8.6886 49 1 1.4919 -1.4885 11.7431 50 1 5.4299 3.5662 8.1364 51 1 3.9825 2.5188 7.8059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656241463.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:04 Heat of formation + Delta-G solvation = -8.090843 kcal Electronic energy + Delta-G solvation = -29629.424504 eV Core-core repulsion = 25565.715630 eV Total energy + Delta-G solvation = -4063.708874 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.10341 -39.78515 -38.79567 -36.69254 -35.42753 -34.95737 -33.43292 -33.29048 -31.27129 -30.75704 -28.02753 -27.41495 -26.40431 -25.26929 -24.16841 -23.07921 -21.78922 -21.38038 -20.72136 -19.83572 -19.16517 -18.53124 -17.75174 -17.66948 -16.38519 -16.18107 -15.89899 -15.67580 -15.17404 -15.08689 -14.67627 -14.54153 -14.48850 -14.11282 -13.83716 -13.66394 -13.63235 -13.18016 -12.92928 -12.82943 -12.60822 -12.46076 -12.30126 -12.13747 -12.09475 -11.66454 -11.60563 -11.55306 -11.44974 -10.99198 -10.61619 -10.58783 -10.34629 -10.23512 -10.09336 -9.85324 -9.72010 -9.64218 -9.59094 -9.25423 -9.22506 -8.99060 -7.38344 -5.86809 -3.23389 1.54959 2.15081 2.60204 2.83296 2.90354 3.25546 3.29826 3.36072 3.85249 4.29021 4.32815 4.48311 4.62489 4.67424 4.73788 4.82450 4.84308 4.99337 5.12113 5.26538 5.31505 5.33464 5.37303 5.39879 5.40996 5.50438 5.54559 5.65521 5.66942 5.75268 5.81338 5.89116 6.02359 6.04288 6.06186 6.06617 6.13815 6.14472 6.19138 6.25229 6.39650 6.47374 6.53408 6.64030 6.80469 7.21241 7.60334 7.90752 7.91163 8.24268 8.32802 9.10235 9.82237 10.01220 11.31304 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008224 B = 0.002984 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3403.987003 B = 9380.358812 C =12183.563495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.181 4.181 3 C 0.167 3.833 4 N -0.744 5.744 5 C 0.711 3.289 6 O -0.582 6.582 7 N -0.742 5.742 8 C 0.181 3.819 9 C -0.161 4.161 10 C -0.150 4.150 11 C 0.515 3.485 12 O -0.528 6.528 13 N -0.722 5.722 14 C 0.129 3.871 15 C -0.124 4.124 16 H 0.089 0.911 17 C -0.148 4.148 18 C 0.173 3.827 19 H 0.072 0.928 20 N -0.729 5.729 21 C -0.248 4.248 22 H 0.092 0.908 23 C 0.006 3.994 24 N -0.931 5.931 25 Si 0.885 3.115 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.279 1.279 29 C -0.167 4.167 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.398 0.602 36 H 0.396 0.604 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.400 0.600 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.361 0.639 49 H 0.260 0.740 50 H 0.073 0.927 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.314 4.429 -23.674 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.199 4.199 3 C 0.043 3.957 4 N -0.399 5.399 5 C 0.411 3.589 6 O -0.459 6.459 7 N -0.401 5.401 8 C 0.092 3.908 9 C -0.219 4.219 10 C -0.208 4.208 11 C 0.299 3.701 12 O -0.403 6.403 13 N -0.374 5.374 14 C 0.006 3.994 15 C -0.143 4.143 16 H 0.107 0.893 17 C -0.188 4.188 18 C 0.061 3.939 19 H 0.090 0.910 20 N -0.370 5.370 21 C -0.377 4.377 22 H 0.110 0.890 23 C -0.190 4.190 24 N -0.578 5.578 25 Si 0.716 3.284 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.205 1.205 29 C -0.208 4.208 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.232 0.768 36 H 0.231 0.769 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.235 0.765 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.194 0.806 49 H 0.071 0.929 50 H 0.091 0.909 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.955 5.669 -24.084 25.057 hybrid contribution -0.587 -2.141 -0.237 2.233 sum 3.368 3.528 -24.321 24.805 Atomic orbital electron populations 1.24016 0.95787 1.02577 0.97535 1.23002 0.96265 0.98113 1.02542 1.20253 0.91106 0.95474 0.88845 1.45142 1.42804 1.19509 1.32489 1.15807 0.78739 0.83081 0.81258 1.90877 1.71617 1.35625 1.47820 1.45302 1.42765 1.20791 1.31197 1.20413 0.89922 0.86611 0.93892 1.22223 1.00078 0.95514 1.04127 1.22074 0.98981 1.02831 0.96928 1.20483 0.87327 0.78196 0.84064 1.90734 1.18379 1.49429 1.81734 1.46179 1.18234 1.56080 1.16924 1.21541 0.93485 1.00241 0.84141 1.22762 0.98612 0.99056 0.93849 0.89288 1.23462 0.98270 1.01534 0.95511 1.21000 0.88837 0.88877 0.95196 0.91012 1.42507 1.45371 1.20881 1.28202 1.19115 1.13064 1.05511 1.00060 0.89010 1.24691 0.98572 0.98181 0.97583 1.69704 1.26983 1.31754 1.29381 0.86550 0.77171 0.83303 0.81417 1.20999 1.21673 1.20519 1.23866 0.99903 0.98095 0.98887 0.88065 0.87782 0.86675 0.91059 0.90725 0.76780 0.76930 0.90994 0.88804 0.92049 0.92503 0.89410 0.90640 0.76548 0.91120 0.91526 0.91402 0.89925 0.80572 0.92942 0.90877 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 14.32 29.01 0.42 -0.44 16 2 C -0.18 -1.00 9.63 -36.03 -0.35 -1.35 16 3 C 0.17 1.18 6.11 -5.19 -0.03 1.15 16 4 N -0.74 -5.51 5.55 -66.41 -0.37 -5.88 16 5 C 0.71 7.06 7.98 -86.93 -0.69 6.36 16 6 O -0.58 -7.52 12.55 5.29 0.07 -7.45 16 7 N -0.74 -6.35 4.86 -53.50 -0.26 -6.61 16 8 C 0.18 1.85 0.98 -132.97 -0.13 1.72 16 9 C -0.16 -1.63 8.38 37.16 0.31 -1.32 16 10 C -0.15 -1.62 7.93 37.16 0.29 -1.32 16 11 C 0.52 6.02 6.65 -10.98 -0.07 5.95 16 12 O -0.53 -7.95 16.10 5.55 0.09 -7.86 16 13 N -0.72 -7.37 5.25 -60.29 -0.32 -7.69 16 14 C 0.13 1.46 5.51 -4.04 -0.02 1.44 16 15 C -0.12 -1.55 3.63 -89.80 -0.33 -1.88 16 16 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.15 -2.04 7.39 -25.92 -0.19 -2.23 16 18 C 0.17 3.03 4.56 -67.12 -0.31 2.73 16 19 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 20 N -0.73 -16.10 5.11 -52.64 -0.27 -16.36 16 21 C -0.25 -6.69 10.45 -15.06 -0.16 -6.85 16 22 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -28.41 13.97 55.49 0.78 -27.63 16 25 Si 0.89 21.03 27.74 -169.99 -4.71 16.31 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.08 6.52 56.52 0.37 -5.72 16 29 C -0.17 -2.45 7.43 -25.92 -0.19 -2.64 16 30 H 0.10 0.51 7.84 -52.49 -0.41 0.10 16 31 H 0.10 0.45 8.06 -52.49 -0.42 0.03 16 32 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.07 0.56 7.79 -51.93 -0.40 0.15 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.40 2.13 8.48 -40.82 -0.35 1.79 16 36 H 0.40 2.63 7.25 -40.82 -0.30 2.34 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.06 6.17 -51.93 -0.32 0.74 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.01 6.16 -51.93 -0.32 0.69 16 42 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 43 H 0.40 3.44 7.22 -40.82 -0.29 3.14 16 44 H 0.07 0.85 7.84 -51.93 -0.41 0.44 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 48 H 0.36 7.76 5.76 -40.82 -0.24 7.53 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.07 0.97 7.90 -51.93 -0.41 0.57 16 51 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 412.42 15.07 6.22 6.22 Total: -1.00 -33.34 412.42 -8.84 -42.19 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -8.51 Total: 13.40 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.55 Total: 1.38 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -0.44 Total: -64.17 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.16 Total: -15.31 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.34 -8.84 -42.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656241463.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.095 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds