Wall clock time and date at job start Tue Mar 31 2020 21:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00020 * 2 1 4 4 N 1.46510 * 109.47022 * 125.00083 * 3 2 1 5 5 C 1.34769 * 119.99839 * 179.97438 * 4 3 2 6 6 O 1.21587 * 120.00358 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99880 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00243 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46964 * 59.99648 * 8 7 5 10 10 C 1.53000 * 109.47067 * 299.99783 * 8 7 5 11 11 C 1.50698 * 109.47299 * 179.97438 * 8 7 5 12 12 O 1.21287 * 120.00234 * 144.99808 * 11 8 7 13 13 N 1.34783 * 120.00120 * 325.00073 * 11 8 7 14 14 C 1.46498 * 120.00214 * 180.02562 * 13 11 8 15 15 C 1.52997 * 109.47070 * 179.97438 * 14 13 11 16 16 H 1.08994 * 112.91116 * 43.74800 * 15 14 13 17 17 C 1.53787 * 113.61251 * 175.00109 * 15 14 13 18 18 C 1.53779 * 87.07963 * 139.97890 * 17 15 14 19 19 H 1.08999 * 113.61062 * 219.93155 * 18 17 15 20 20 N 1.46502 * 113.61301 * 89.11687 * 18 17 15 21 21 C 1.36941 * 119.99707 * 155.00239 * 20 18 17 22 22 H 1.07994 * 120.00121 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99604 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99466 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00191 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46876 * 90.00533 * 25 23 21 27 27 H 1.48495 * 109.47268 * 210.00274 * 25 23 21 28 28 H 1.48497 * 109.47290 * 330.00740 * 25 23 21 29 29 C 1.53779 * 87.08402 * 334.56577 * 18 17 15 30 30 H 1.08002 * 119.99442 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00469 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.99442 * 179.97438 * 2 1 3 33 33 H 1.08992 * 109.47592 * 5.00067 * 3 2 1 34 34 H 1.09000 * 109.47311 * 244.99581 * 3 2 1 35 35 H 0.96995 * 119.99500 * 359.97438 * 4 3 2 36 36 H 0.97001 * 119.99963 * 359.97438 * 7 5 4 37 37 H 1.09003 * 109.46674 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.47092 * 299.99841 * 9 8 7 39 39 H 1.08996 * 109.47050 * 60.00459 * 9 8 7 40 40 H 1.09000 * 109.46850 * 299.99804 * 10 8 7 41 41 H 1.09000 * 109.46663 * 59.99860 * 10 8 7 42 42 H 1.08995 * 109.46769 * 179.97438 * 10 8 7 43 43 H 0.96997 * 119.99499 * 359.97438 * 13 11 8 44 44 H 1.08998 * 109.46965 * 59.99571 * 14 13 11 45 45 H 1.09003 * 109.46664 * 299.99726 * 14 13 11 46 46 H 1.08997 * 113.61028 * 254.52850 * 17 15 14 47 47 H 1.08998 * 113.61447 * 25.34385 * 17 15 14 48 48 H 0.96996 * 120.00397 * 334.99617 * 20 18 17 49 49 H 0.97008 * 119.99061 * 179.97438 * 24 23 21 50 50 H 1.09002 * 113.61557 * 270.88569 * 29 18 17 51 51 H 1.09004 * 113.61501 * 139.97990 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 3.7790 2.4085 1.3329 6 8 3.7157 3.3574 0.5754 7 7 4.6352 2.4329 2.3735 8 6 5.4884 3.6034 2.5928 9 6 4.6128 4.8400 2.8054 10 6 6.3849 3.8171 1.3715 11 6 6.3450 3.3793 3.8123 12 8 7.4757 3.8168 3.8479 13 7 5.8547 2.6927 4.8633 14 6 6.6872 2.4753 6.0490 15 6 5.8976 1.6752 7.0869 16 1 5.3466 0.8420 6.6509 17 6 6.7239 1.2871 8.3244 18 6 5.4740 1.6059 9.1616 19 1 5.6948 2.1186 10.0979 20 7 4.5779 0.4605 9.3379 21 6 3.7395 0.4071 10.4194 22 1 3.7392 1.2092 11.1425 23 6 2.8907 -0.6785 10.5867 24 7 2.0853 -0.7300 11.6264 25 14 2.8917 -2.0663 9.3362 26 1 3.8830 -3.0956 9.7400 27 1 1.5401 -2.6781 9.2747 28 1 3.2530 -1.5284 8.0001 29 6 5.0498 2.5507 8.0249 30 1 -0.5399 0.9354 -0.0004 31 1 -0.5401 -0.9352 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3587 2.1316 0.0896 34 1 2.6214 1.4026 -0.9313 35 1 3.0446 0.5746 1.7356 36 1 4.6860 1.6757 2.9776 37 1 5.2477 5.7110 2.9682 38 1 3.9930 5.0023 1.9236 39 1 3.9742 4.6878 3.6755 40 1 7.0086 2.9362 1.2201 41 1 5.7650 3.9794 0.4898 42 1 7.0193 4.6883 1.5346 43 1 4.9504 2.3432 4.8350 44 1 6.9734 3.4376 6.4734 45 1 7.5829 1.9216 5.7674 46 1 7.0080 0.2351 8.3473 47 1 7.5625 1.9563 8.5170 48 1 4.5783 -0.2601 8.6886 49 1 1.4919 -1.4885 11.7431 50 1 5.4299 3.5662 8.1364 51 1 3.9825 2.5188 7.8059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656241463.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:03 Heat of formation + Delta-G solvation = -33.144546 kcal Electronic energy + Delta-G solvation = -29630.510914 eV Core-core repulsion = 25565.715630 eV Total energy + Delta-G solvation = -4064.795284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.94651 -40.70296 -39.97793 -37.37662 -36.24294 -36.13481 -34.97580 -34.04842 -32.64390 -31.97846 -29.16882 -28.27488 -26.99829 -26.44736 -25.64620 -24.41588 -22.97100 -22.16395 -21.30245 -20.66607 -20.18209 -19.66540 -19.51722 -18.48121 -17.23808 -17.00584 -16.63281 -16.60543 -16.54208 -16.10588 -15.81869 -15.73620 -15.25939 -15.14407 -14.93187 -14.83267 -14.59960 -14.29157 -14.14978 -13.93188 -13.50286 -13.36555 -13.33266 -13.13351 -13.07954 -13.01201 -12.91250 -12.67125 -12.38645 -12.17146 -12.02466 -11.87302 -11.66065 -11.58646 -11.37400 -11.01933 -10.91168 -10.73275 -10.54430 -10.39667 -10.16189 -9.87072 -9.28506 -8.01538 -5.35505 1.03550 1.35439 1.37304 1.43550 1.50478 1.86688 1.96279 2.11438 2.49658 3.22770 3.28803 3.44012 3.52582 3.73744 3.78657 3.87201 3.89544 3.94836 4.01562 4.19231 4.29033 4.38453 4.55573 4.60883 4.67222 4.70977 4.72903 4.76872 4.77407 4.81136 4.94886 4.99389 5.00223 5.08434 5.12416 5.20022 5.24170 5.31068 5.33141 5.44203 5.46192 5.55499 5.66146 5.78549 5.81954 5.86462 6.23648 6.36013 6.97149 7.03329 7.09253 7.51815 7.85706 8.04841 9.20086 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008224 B = 0.002984 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3403.987003 B = 9380.358812 C =12183.563495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.182 4.182 3 C 0.167 3.833 4 N -0.732 5.732 5 C 0.707 3.293 6 O -0.614 6.614 7 N -0.732 5.732 8 C 0.186 3.814 9 C -0.156 4.156 10 C -0.144 4.144 11 C 0.521 3.479 12 O -0.561 6.561 13 N -0.711 5.711 14 C 0.136 3.864 15 C -0.104 4.104 16 H 0.095 0.905 17 C -0.133 4.133 18 C 0.144 3.856 19 H 0.054 0.946 20 N -0.732 5.732 21 C -0.233 4.233 22 H 0.054 0.946 23 C -0.067 4.067 24 N -0.986 5.986 25 Si 0.958 3.042 26 H -0.280 1.280 27 H -0.298 1.298 28 H -0.243 1.243 29 C -0.156 4.156 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.411 0.589 36 H 0.408 0.592 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.410 0.590 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.105 0.895 48 H 0.368 0.632 49 H 0.257 0.743 50 H 0.089 0.911 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.163 3.339 -25.748 26.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.200 4.200 3 C 0.044 3.956 4 N -0.388 5.388 5 C 0.407 3.593 6 O -0.494 6.494 7 N -0.391 5.391 8 C 0.096 3.904 9 C -0.215 4.215 10 C -0.203 4.203 11 C 0.306 3.694 12 O -0.438 6.438 13 N -0.363 5.363 14 C 0.013 3.987 15 C -0.122 4.122 16 H 0.113 0.887 17 C -0.172 4.172 18 C 0.034 3.966 19 H 0.072 0.928 20 N -0.374 5.374 21 C -0.364 4.364 22 H 0.072 0.928 23 C -0.258 4.258 24 N -0.637 5.637 25 Si 0.785 3.215 26 H -0.207 1.207 27 H -0.225 1.225 28 H -0.167 1.167 29 C -0.196 4.196 30 H 0.118 0.882 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.247 0.753 36 H 0.244 0.756 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.247 0.753 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.124 0.876 48 H 0.201 0.799 49 H 0.066 0.934 50 H 0.108 0.892 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.829 4.574 -26.179 27.010 hybrid contribution -0.833 -1.682 0.486 1.939 sum 3.996 2.892 -25.692 26.162 Atomic orbital electron populations 1.24171 0.95828 1.03151 0.96803 1.22964 0.96280 0.97657 1.03127 1.20248 0.90838 0.96158 0.88406 1.45064 1.42018 1.19153 1.32614 1.15955 0.78997 0.83209 0.81132 1.90864 1.72588 1.36986 1.48977 1.45097 1.42153 1.20699 1.31146 1.20258 0.89833 0.87232 0.93049 1.22165 0.99923 0.95571 1.03806 1.21998 0.98805 1.02626 0.96857 1.20568 0.86833 0.77656 0.84380 1.90727 1.19864 1.50902 1.82344 1.46059 1.18585 1.55396 1.16250 1.21409 0.93432 0.99943 0.83925 1.22586 0.97600 0.98528 0.93521 0.88724 1.23354 0.97150 1.02294 0.94396 1.21345 0.90661 0.88549 0.95995 0.92752 1.42399 1.45463 1.22579 1.26975 1.19055 1.13037 1.03941 1.00361 0.92831 1.25568 0.98661 1.01486 1.00124 1.69906 1.28657 1.32875 1.32213 0.85368 0.76636 0.79306 0.80189 1.20672 1.22534 1.16714 1.23720 0.99481 0.98701 0.97742 0.88160 0.86632 0.85461 0.92060 0.91428 0.75343 0.75560 0.90882 0.89930 0.91430 0.92590 0.90288 0.91027 0.75340 0.91349 0.90939 0.91249 0.87636 0.79852 0.93382 0.89247 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 14.32 67.78 0.97 -0.44 16 2 C -0.18 -1.67 9.63 25.64 0.25 -1.43 16 3 C 0.17 2.17 6.11 85.63 0.52 2.69 16 4 N -0.73 -9.51 5.55 -482.30 -2.68 -12.19 16 5 C 0.71 12.99 7.98 179.06 1.43 14.42 16 6 O -0.61 -15.52 12.55 -3.99 -0.05 -15.57 16 7 N -0.73 -10.98 4.86 -441.45 -2.15 -13.13 16 8 C 0.19 3.50 0.98 2.86 0.00 3.51 16 9 C -0.16 -2.97 8.38 71.98 0.60 -2.36 16 10 C -0.14 -2.99 7.93 71.98 0.57 -2.42 16 11 C 0.52 10.95 6.65 87.66 0.58 11.53 16 12 O -0.56 -15.81 16.10 -3.05 -0.05 -15.86 16 13 N -0.71 -12.20 5.25 -463.06 -2.43 -14.63 16 14 C 0.14 2.58 5.51 86.38 0.48 3.05 16 15 C -0.10 -2.21 3.63 -10.27 -0.04 -2.25 16 16 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 17 C -0.13 -3.22 7.39 31.12 0.23 -2.99 16 18 C 0.14 4.84 4.56 45.52 0.21 5.05 16 19 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 20 N -0.73 -31.36 5.11 -320.45 -1.64 -33.00 16 21 C -0.23 -12.75 10.45 84.03 0.88 -11.87 16 22 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 23 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 24 N -0.99 -61.92 13.97 21.65 0.30 -61.61 16 25 Si 0.96 42.78 27.74 68.60 1.90 44.68 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 27 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.24 -9.28 6.52 99.48 0.65 -8.63 16 29 C -0.16 -4.21 7.43 31.12 0.23 -3.97 16 30 H 0.10 0.88 7.84 -2.91 -0.02 0.85 16 31 H 0.12 0.75 8.06 -2.91 -0.02 0.73 16 32 H 0.13 0.87 8.06 -2.91 -0.02 0.85 16 33 H 0.06 0.92 7.79 -2.39 -0.02 0.90 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.41 3.31 8.48 -92.71 -0.79 2.52 16 36 H 0.41 4.18 7.25 -92.71 -0.67 3.51 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.81 6.17 -2.39 -0.01 1.79 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.80 6.16 -2.39 -0.01 1.78 16 42 H 0.07 1.52 7.87 -2.39 -0.02 1.50 16 43 H 0.41 5.54 7.22 -92.71 -0.67 4.87 16 44 H 0.07 1.40 7.84 -2.39 -0.02 1.38 16 45 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.11 2.12 8.10 -2.39 -0.02 2.10 16 48 H 0.37 14.73 5.76 -92.71 -0.53 14.20 16 49 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 50 H 0.09 2.14 7.90 -2.39 -0.02 2.12 16 51 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -74.02 412.42 -1.17 -75.19 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -1.76 Total: 36.94 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 7.38 Total: 9.17 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -8.59 Total: -134.56 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.10 Total: -31.43 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.90 Total: 44.68 kcal Total: -74.02 -1.17 -75.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656241463.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.042 kcal (2) G-P(sol) polarization free energy of solvation -74.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds