Wall clock time and date at job start Tue Mar 31 2020 22:12:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46897 * 1
3 3 C 1.47443 * 111.00434 * 2 1
4 4 C 1.54319 * 107.23337 * 123.25468 * 3 2 1
5 5 C 1.55137 * 103.01720 * 22.28546 * 4 3 2
6 6 C 1.47855 * 110.99615 * 120.84269 * 2 1 3
7 7 H 1.08995 * 110.37306 * 332.57512 * 6 2 1
8 8 C 1.50693 * 110.37284 * 94.80632 * 6 2 1
9 9 O 1.21286 * 120.00464 * 18.54762 * 8 6 2
10 10 N 1.34783 * 119.99840 * 198.55045 * 8 6 2
11 11 C 1.46506 * 120.00061 * 180.02562 * 10 8 6
12 12 H 1.08998 * 109.47121 * 34.98911 * 11 10 8
13 13 C 1.52993 * 109.47137 * 154.99588 * 11 10 8
14 14 N 1.46901 * 109.46980 * 304.99664 * 13 11 10
15 15 C 1.46902 * 110.99844 * 179.97438 * 14 13 11
16 16 C 1.50702 * 109.47027 * 179.97438 * 15 14 13
17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14
18 18 N 1.34783 * 120.00004 * 180.02562 * 16 15 14
19 19 C 1.37092 * 119.99804 * 180.02562 * 18 16 15
20 20 H 1.08002 * 120.00499 * 0.02562 * 19 18 16
21 21 C 1.38956 * 119.99671 * 179.72159 * 19 18 16
22 22 N 1.31414 * 120.00152 * 0.27554 * 21 19 18
23 23 Si 1.86803 * 119.99914 * 180.27723 * 21 19 18
24 24 H 1.48496 * 109.47187 * 359.97438 * 23 21 19
25 25 H 1.48494 * 109.47141 * 119.99961 * 23 21 19
26 26 H 1.48498 * 109.47018 * 240.00007 * 23 21 19
27 27 C 1.52999 * 109.46539 * 274.99536 * 11 10 8
28 28 C 1.52998 * 117.49862 * 128.62730 * 27 11 10
29 29 C 1.52999 * 117.50437 * 60.00178 * 27 11 10
30 30 H 1.08991 * 109.47359 * 299.16303 * 1 2 3
31 31 H 1.09006 * 109.46580 * 59.16163 * 1 2 3
32 32 H 1.09002 * 109.47357 * 179.15627 * 1 2 3
33 33 H 1.09002 * 109.88271 * 242.66023 * 3 2 1
34 34 H 1.09001 * 109.88390 * 3.68543 * 3 2 1
35 35 H 1.08998 * 110.70383 * 140.66804 * 4 3 2
36 36 H 1.08996 * 110.70171 * 263.90391 * 4 3 2
37 37 H 1.09006 * 110.98808 * 206.25570 * 5 4 3
38 38 H 1.08999 * 110.99531 * 82.44000 * 5 4 3
39 39 H 0.96993 * 119.99765 * 359.97438 * 10 8 6
40 40 H 1.08997 * 109.47529 * 184.99750 * 13 11 10
41 41 H 1.08999 * 109.47191 * 64.99280 * 13 11 10
42 42 H 1.00894 * 111.00401 * 56.04877 * 14 13 11
43 43 H 1.09004 * 109.47131 * 60.00016 * 15 14 13
44 44 H 1.08994 * 109.47471 * 299.99766 * 15 14 13
45 45 H 0.97000 * 119.99715 * 359.97438 * 18 16 15
46 46 H 0.96991 * 119.99827 * 179.97438 * 22 21 19
47 47 H 1.09005 * 115.54633 * 274.32721 * 27 11 10
48 48 H 1.08997 * 117.49711 * 359.97438 * 28 27 11
49 49 H 1.08999 * 117.50126 * 145.01838 * 28 27 11
50 50 H 1.08999 * 117.50008 * 214.98357 * 29 27 11
51 51 H 1.09001 * 117.49374 * 359.97350 * 29 27 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9975 1.3765 0.0000
4 6 2.9159 1.5136 1.2325
5 6 3.3046 0.0443 1.5438
6 6 1.9987 -0.7077 1.1852
7 1 1.2880 -0.6519 2.0096
8 6 2.2972 -2.1457 0.8476
9 8 2.4208 -2.4837 -0.3107
10 7 2.4268 -3.0563 1.8328
11 6 2.7175 -4.4542 1.5046
12 1 3.3702 -4.4945 0.6326
13 6 3.4116 -5.1232 2.6926
14 7 4.6035 -4.3485 3.0631
15 6 5.2968 -4.9623 4.2035
16 6 6.5116 -4.1420 4.5536
17 8 6.7738 -3.1440 3.9161
18 7 7.3068 -4.5174 5.5750
19 6 8.4116 -3.7709 5.8937
20 1 8.6446 -2.8817 5.3266
21 6 9.2281 -4.1547 6.9505
22 7 8.9444 -5.2362 7.6409
23 14 10.7292 -3.1332 7.3897
24 1 10.8269 -1.9744 6.4663
25 1 10.6041 -2.6447 8.7864
26 1 11.9504 -3.9690 7.2652
27 6 1.4107 -5.1883 1.1979
28 6 1.3356 -5.9811 -0.1085
29 6 0.5640 -4.6677 0.0347
30 1 -0.3633 0.5007 0.8973
31 1 -0.3633 0.5268 -0.8824
32 1 -0.3634 -1.0276 -0.0151
33 1 2.5698 1.5538 -0.9105
34 1 1.1754 2.0892 0.0659
35 1 3.8001 2.1032 0.9906
36 1 2.3744 1.9545 2.0694
37 1 3.5493 -0.0797 2.5988
38 1 4.1301 -0.2835 0.9120
39 1 2.3283 -2.7859 2.7590
40 1 3.7074 -6.1356 2.4177
41 1 2.7260 -5.1622 3.5391
42 1 4.3639 -3.3884 3.2603
43 1 5.6056 -5.9737 3.9395
44 1 4.6241 -4.9998 5.0604
45 1 7.0969 -5.3153 6.0851
46 1 9.5146 -5.5043 8.3783
47 1 0.8839 -5.5917 2.0628
48 1 2.2171 -5.9793 -0.7496
49 1 0.7594 -6.9064 -0.1034
50 1 -0.5197 -4.7288 0.1342
51 1 0.9378 -3.8018 -0.5117
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001670507015.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:12:30
Heat of formation + Delta-G solvation = -59.780862 kcal
Electronic energy + Delta-G solvation = -30021.198324 eV
Core-core repulsion = 25955.248003 eV
Total energy + Delta-G solvation = -4065.950322 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.39624 -40.16689 -39.57419 -38.02053 -36.79868 -35.87548 -34.69186 -33.25138
-33.03879 -31.28934 -29.83503 -27.84596 -26.62634 -25.84398 -23.91269 -23.15676
-22.98836 -22.07012 -21.36198 -21.16422 -20.84162 -19.89843 -18.53671 -17.82757
-17.40385 -17.02548 -16.71835 -16.65384 -16.31976 -16.02375 -15.90327 -15.74914
-15.17239 -15.14218 -14.98941 -14.54875 -14.32948 -14.26955 -14.08222 -13.59636
-13.51726 -13.23067 -13.17154 -12.93486 -12.86935 -12.77519 -12.52197 -12.47567
-12.40300 -12.39220 -12.14382 -12.11504 -12.08359 -11.69731 -11.50589 -11.25167
-11.12534 -10.62984 -10.34413 -10.00311 -9.93300 -9.31102 -9.27427 -8.46296
-5.94499 1.36723 1.42372 1.56162 1.69952 2.03674 2.06723 2.29320
2.81929 2.97086 3.17324 3.21484 3.47825 3.56752 3.67599 3.80379
3.95526 3.98532 4.05679 4.13426 4.16550 4.23526 4.31643 4.35810
4.42140 4.45279 4.46815 4.52526 4.55167 4.64654 4.76039 4.76584
4.83540 4.86567 4.92868 4.94836 4.97382 5.04651 5.06538 5.26533
5.29711 5.39882 5.41999 5.57480 5.85217 5.87524 6.07511 6.09522
6.39479 6.61259 6.64078 7.13927 7.39397 7.57773 8.13241 8.71319
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.011540 B = 0.002636 C = 0.002199
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2425.673384 B =10619.329191 C =12730.816559
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.539 5.539
3 C 0.044 3.956
4 C -0.133 4.133
5 C -0.119 4.119
6 C 0.059 3.941
7 H 0.098 0.902
8 C 0.524 3.476
9 O -0.555 6.555
10 N -0.713 5.713
11 C 0.185 3.815
12 H 0.061 0.939
13 C 0.062 3.938
14 N -0.685 5.685
15 C 0.065 3.935
16 C 0.437 3.563
17 O -0.623 6.623
18 N -0.573 5.573
19 C -0.331 4.331
20 H 0.078 0.922
21 C -0.013 4.013
22 N -0.920 5.920
23 Si 0.991 3.009
24 H -0.274 1.274
25 H -0.270 1.270
26 H -0.273 1.273
27 C -0.159 4.159
28 C -0.168 4.168
29 C -0.188 4.188
30 H 0.044 0.956
31 H 0.077 0.923
32 H 0.057 0.943
33 H 0.069 0.931
34 H 0.077 0.923
35 H 0.083 0.917
36 H 0.088 0.912
37 H 0.092 0.908
38 H 0.054 0.946
39 H 0.406 0.594
40 H 0.095 0.905
41 H 0.061 0.939
42 H 0.344 0.656
43 H 0.104 0.896
44 H 0.074 0.926
45 H 0.397 0.603
46 H 0.277 0.723
47 H 0.126 0.874
48 H 0.080 0.920
49 H 0.112 0.888
50 H 0.099 0.901
51 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.675 4.988 -8.133 23.682
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 N -0.263 5.263
3 C -0.083 4.083
4 C -0.172 4.172
5 C -0.158 4.158
6 C -0.053 4.053
7 H 0.115 0.885
8 C 0.311 3.689
9 O -0.433 6.433
10 N -0.366 5.366
11 C 0.080 3.920
12 H 0.080 0.920
13 C -0.067 4.067
14 N -0.319 5.319
15 C -0.067 4.067
16 C 0.225 3.775
17 O -0.509 6.509
18 N -0.211 5.211
19 C -0.461 4.461
20 H 0.096 0.904
21 C -0.212 4.212
22 N -0.561 5.561
23 Si 0.814 3.186
24 H -0.199 1.199
25 H -0.195 1.195
26 H -0.198 1.198
27 C -0.179 4.179
28 C -0.205 4.205
29 C -0.225 4.225
30 H 0.063 0.937
31 H 0.096 0.904
32 H 0.076 0.924
33 H 0.088 0.912
34 H 0.096 0.904
35 H 0.102 0.898
36 H 0.107 0.893
37 H 0.111 0.889
38 H 0.073 0.927
39 H 0.242 0.758
40 H 0.114 0.886
41 H 0.079 0.921
42 H 0.163 0.837
43 H 0.122 0.878
44 H 0.092 0.908
45 H 0.231 0.769
46 H 0.087 0.913
47 H 0.143 0.857
48 H 0.099 0.901
49 H 0.131 0.869
50 H 0.117 0.883
51 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -20.763 4.764 -10.156 23.600
hybrid contribution 0.074 0.578 2.136 2.214
sum -20.689 5.342 -8.019 22.823
Atomic orbital electron populations
1.22545 0.86092 1.01964 1.01704 1.62996 1.09121 1.14863 1.39364
1.22870 0.98601 0.88145 0.98703 1.22780 1.00513 0.95511 0.98359
1.22646 0.95064 0.95594 1.02497 1.22509 0.98548 0.90954 0.93256
0.88476 1.20700 0.75502 0.87572 0.85148 1.90602 1.50277 1.81120
1.21270 1.45924 1.72530 1.08302 1.09807 1.20400 0.93690 0.80003
0.97901 0.92041 1.22258 0.89974 0.98177 0.96334 1.59959 1.26449
1.06336 1.39139 1.21550 0.93242 0.98347 0.93573 1.20918 0.87025
0.87579 0.82003 1.90502 1.75705 1.30313 1.54402 1.41932 1.23556
1.26160 1.29426 1.19675 1.03220 1.08536 1.14647 0.90444 1.26008
1.01788 0.97802 0.95639 1.69670 1.40494 1.24619 1.21349 0.84903
0.77450 0.78000 0.78198 1.19852 1.19475 1.19789 1.22628 0.97917
1.03771 0.93579 1.22954 1.02699 0.95890 0.98982 1.23164 0.98218
0.98827 1.02287 0.93750 0.90397 0.92423 0.91247 0.90427 0.89813
0.89295 0.88929 0.92738 0.75830 0.88627 0.92096 0.83661 0.87779
0.90838 0.76933 0.91327 0.85656 0.90143 0.86940 0.88300 0.89054
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.40 9.12 127.69 1.17 1.57 16
2 N -0.54 -11.37 4.69 -891.01 -4.18 -15.55 16
3 C 0.04 0.75 6.90 86.65 0.60 1.34 16
4 C -0.13 -2.12 6.94 31.77 0.22 -1.90 16
5 C -0.12 -2.50 6.48 31.98 0.21 -2.29 16
6 C 0.06 1.21 2.84 44.63 0.13 1.33 16
7 H 0.10 1.48 7.77 -2.39 -0.02 1.46 16
8 C 0.52 13.49 6.45 87.65 0.56 14.05 16
9 O -0.56 -18.90 13.62 -3.05 -0.04 -18.94 16
10 N -0.71 -15.13 4.34 -442.53 -1.92 -17.05 16
11 C 0.19 4.15 2.58 44.99 0.12 4.26 16
12 H 0.06 1.86 7.33 -2.39 -0.02 1.84 16
13 C 0.06 1.29 5.28 86.30 0.46 1.74 16
14 N -0.69 -20.36 6.12 -517.94 -3.17 -23.53 16
15 C 0.07 2.09 6.17 85.56 0.53 2.61 16
16 C 0.44 20.25 7.82 87.66 0.69 20.93 16
17 O -0.62 -34.01 15.78 -3.07 -0.05 -34.06 16
18 N -0.57 -28.82 5.29 -306.97 -1.62 -30.44 16
19 C -0.33 -18.61 9.68 84.04 0.81 -17.80 16
20 H 0.08 4.68 7.16 -2.91 -0.02 4.65 16
21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16
22 N -0.92 -49.06 13.05 21.67 0.28 -48.78 16
23 Si 0.99 42.61 29.55 68.60 2.03 44.63 16
24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16
25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16
26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16
27 C -0.16 -2.94 5.36 -10.80 -0.06 -3.00 16
28 C -0.17 -3.21 10.18 30.59 0.31 -2.90 16
29 C -0.19 -3.95 9.73 30.59 0.30 -3.65 16
30 H 0.04 0.54 8.09 -2.39 -0.02 0.52 16
31 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16
32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
34 H 0.08 0.98 7.58 -2.39 -0.02 0.96 16
35 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16
37 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16
38 H 0.05 1.48 8.05 -2.39 -0.02 1.46 16
39 H 0.41 6.69 8.15 -92.71 -0.76 5.93 16
40 H 0.10 1.89 8.14 -2.39 -0.02 1.88 16
41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
42 H 0.34 10.51 7.28 -89.70 -0.65 9.86 16
43 H 0.10 3.04 8.14 -2.38 -0.02 3.02 16
44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16
45 H 0.40 18.84 7.90 -92.71 -0.73 18.10 16
46 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16
47 H 0.13 1.78 8.11 -2.38 -0.02 1.76 16
48 H 0.08 1.79 8.05 -2.39 -0.02 1.78 16
49 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16
50 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16
51 H 0.09 2.54 5.02 -2.39 -0.01 2.53 16
Total: -1.00 -73.87 411.28 -3.36 -77.23
By element:
Atomic # 1 Polarization: 51.57 SS G_CDS: -1.19 Total: 50.38 kcal
Atomic # 6 Polarization: 9.60 SS G_CDS: 6.50 Total: 16.10 kcal
Atomic # 7 Polarization: -124.74 SS G_CDS: -10.61 Total: -135.35 kcal
Atomic # 8 Polarization: -52.90 SS G_CDS: -0.09 Total: -52.99 kcal
Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal
Total: -73.87 -3.36 -77.23 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001670507015.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.449 kcal
(2) G-P(sol) polarization free energy of solvation -73.870 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.421 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.360 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.230 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.781 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds