Wall clock time and date at job start Tue Mar 31 2020 22:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46842 * 110.99231 * 2 1 4 4 C 1.53037 * 109.51481 * 185.84892 * 3 2 1 5 5 C 1.53123 * 109.27544 * 300.81417 * 4 3 2 6 6 C 1.53114 * 109.16009 * 57.65493 * 5 4 3 7 7 C 1.46850 * 110.99431 * 124.20147 * 2 1 3 8 8 H 1.08994 * 109.46324 * 294.16359 * 7 2 1 9 9 C 1.50702 * 109.46038 * 54.14791 * 7 2 1 10 10 O 1.21281 * 120.00528 * 20.01973 * 9 7 2 11 11 N 1.34781 * 119.99355 * 200.01655 * 9 7 2 12 12 C 1.46503 * 119.99698 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46992 * 180.02562 * 12 11 9 14 14 H 1.09002 * 112.78362 * 284.19068 * 13 12 11 15 15 C 1.53516 * 113.47473 * 153.38525 * 13 12 11 16 16 C 1.53518 * 83.57131 * 219.20919 * 15 13 12 17 17 N 1.47481 * 87.93504 * 26.02351 * 16 15 13 18 18 C 1.46892 * 110.99987 * 221.29679 * 17 16 15 19 19 C 1.50695 * 109.47369 * 265.97010 * 18 17 16 20 20 O 1.21297 * 119.99943 * 0.02562 * 19 18 17 21 21 N 1.34779 * 120.00454 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00130 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00049 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99753 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00069 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99709 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99702 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99882 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99875 * 26 24 22 30 30 H 1.08994 * 109.47380 * 295.80111 * 1 2 3 31 31 H 1.09011 * 109.46821 * 55.79873 * 1 2 3 32 32 H 1.08997 * 109.47158 * 175.79115 * 1 2 3 33 33 H 1.09006 * 109.47360 * 65.82683 * 3 2 1 34 34 H 1.09005 * 109.45716 * 305.85481 * 3 2 1 35 35 H 1.09002 * 109.50033 * 180.87619 * 4 3 2 36 36 H 1.08992 * 109.53905 * 60.77163 * 4 3 2 37 37 H 1.09000 * 109.52283 * 297.75242 * 5 4 3 38 38 H 1.08997 * 109.52076 * 177.56011 * 5 4 3 39 39 H 1.09003 * 109.50463 * 182.40745 * 6 5 4 40 40 H 1.08995 * 109.50664 * 62.28687 * 6 5 4 41 41 H 0.96999 * 120.00380 * 0.02562 * 11 9 7 42 42 H 1.09000 * 109.46711 * 60.00169 * 12 11 9 43 43 H 1.09005 * 109.47336 * 300.00481 * 12 11 9 44 44 H 1.09000 * 114.16661 * 332.84947 * 15 13 12 45 45 H 1.08995 * 114.17126 * 105.36947 * 15 13 12 46 46 H 1.09001 * 113.47444 * 271.25249 * 16 15 13 47 47 H 1.08996 * 113.47052 * 140.79395 * 16 15 13 48 48 H 1.08998 * 109.47455 * 145.96954 * 18 17 16 49 49 H 1.09007 * 109.47046 * 25.97414 * 18 17 16 50 50 H 0.97006 * 119.99547 * 0.02562 * 21 19 18 51 51 H 0.97001 * 120.00308 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5180 1.3342 -0.1470 5 6 4.1188 0.5370 1.0141 6 6 3.5181 -0.8714 1.0208 7 6 1.9952 -0.7707 1.1339 8 1 1.7326 -0.2705 2.0660 9 6 1.3981 -2.1543 1.1208 10 8 0.9167 -2.5975 0.0997 11 7 1.3991 -2.8992 2.2441 12 6 0.8181 -4.2441 2.2316 13 6 0.9468 -4.8681 3.6226 14 1 1.9593 -5.2077 3.8408 15 6 -0.1294 -5.9210 3.9224 16 6 -0.1125 -5.2893 5.3215 17 7 0.3606 -4.0413 4.6939 18 6 1.4097 -3.4091 5.5048 19 6 0.7883 -2.3888 6.4233 20 8 -0.4107 -2.2065 6.4047 21 7 1.5647 -1.6795 7.2664 22 6 0.9993 -0.7516 8.1024 23 1 -0.0682 -0.5887 8.0851 24 6 1.7998 -0.0201 8.9711 25 7 3.0987 -0.2179 8.9917 26 14 1.0295 1.2447 10.1096 27 1 0.9909 2.5644 9.4297 28 1 1.8378 1.3508 11.3509 29 1 -0.3527 0.8245 10.4535 30 1 -0.3634 0.4473 0.9251 31 1 -0.3633 0.5777 -0.8500 32 1 -0.3633 -1.0249 -0.0754 33 1 1.7324 1.8610 0.9376 34 1 1.5631 1.9256 -0.8330 35 1 3.9097 2.3513 -0.1313 36 1 3.7817 0.8571 -1.0908 37 1 3.8887 1.0355 1.9558 38 1 5.1997 0.4714 0.8901 39 1 3.9099 -1.4301 1.8707 40 1 3.7811 -1.3836 0.0953 41 1 1.7838 -2.5446 3.0609 42 1 1.3471 -4.8615 1.5056 43 1 -0.2350 -4.1824 1.9573 44 1 -1.0619 -5.7737 3.3775 45 1 0.2306 -6.9492 3.8892 46 1 0.6172 -5.7413 5.9932 47 1 -1.1020 -5.2017 5.7702 48 1 2.1289 -2.9178 4.8495 49 1 1.9185 -4.1695 6.0974 50 1 2.5236 -1.8256 7.2815 51 1 3.4988 -0.8744 8.4002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670657399.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:36 Heat of formation + Delta-G solvation = -27.044859 kcal Electronic energy + Delta-G solvation = -30748.984097 eV Core-core repulsion = 26684.453315 eV Total energy + Delta-G solvation = -4064.530782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.74040 -40.08334 -38.10242 -37.84941 -34.65252 -34.31395 -33.53321 -31.63225 -31.33849 -30.60650 -28.44980 -26.83059 -25.73551 -24.32281 -23.74435 -23.17953 -22.65016 -20.64550 -19.98618 -19.76260 -19.61971 -17.97273 -17.41514 -16.58666 -16.23546 -16.15205 -15.56632 -15.31033 -15.18791 -14.88198 -14.52948 -14.49148 -14.37986 -14.03264 -13.90088 -13.74475 -13.32043 -13.20752 -13.08369 -12.83038 -12.65116 -12.28009 -11.97432 -11.78086 -11.67616 -11.51918 -11.46132 -11.25389 -11.08666 -11.05568 -10.94021 -10.89476 -10.64962 -10.55749 -10.25778 -9.91345 -9.59254 -9.57826 -9.04385 -8.93867 -8.42045 -8.33809 -8.08170 -6.80079 -3.93562 2.61812 2.99092 3.26521 3.31670 3.50548 3.74249 3.76381 3.88385 4.23428 4.33108 4.52585 4.58508 4.64703 4.73502 4.81195 4.86625 4.95445 4.97896 5.08354 5.10663 5.19981 5.27632 5.32037 5.33265 5.37396 5.43227 5.45487 5.49547 5.55134 5.61976 5.66855 5.72811 5.74179 5.79445 5.83770 5.88421 5.91450 5.95521 6.03249 6.07629 6.16733 6.29853 6.49233 6.81165 6.94148 7.01952 7.49843 7.75594 8.03236 8.24264 8.54709 8.75561 9.42079 9.83265 10.63275 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.003748 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.288897 B = 7469.012154 C = 9963.922375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.519 5.519 3 C 0.054 3.946 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.105 4.105 7 C 0.067 3.933 8 H 0.064 0.936 9 C 0.520 3.480 10 O -0.527 6.527 11 N -0.721 5.721 12 C 0.143 3.857 13 C 0.004 3.996 14 H 0.082 0.918 15 C -0.132 4.132 16 C 0.004 3.996 17 N -0.432 5.432 18 C 0.007 3.993 19 C 0.447 3.553 20 O -0.565 6.565 21 N -0.578 5.578 22 C -0.381 4.381 23 H 0.099 0.901 24 C -0.008 4.008 25 N -0.901 5.901 26 Si 1.092 2.908 27 H -0.285 1.285 28 H -0.281 1.281 29 H -0.284 1.284 30 H 0.023 0.977 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.400 0.600 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.090 0.910 48 H 0.079 0.921 49 H 0.061 0.939 50 H 0.374 0.626 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.945 -5.158 -15.218 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.244 5.244 3 C -0.074 4.074 4 C -0.155 4.155 5 C -0.159 4.159 6 C -0.143 4.143 7 C -0.045 4.045 8 H 0.081 0.919 9 C 0.305 3.695 10 O -0.403 6.403 11 N -0.374 5.374 12 C 0.018 3.982 13 C -0.107 4.107 14 H 0.100 0.900 15 C -0.171 4.171 16 C -0.124 4.124 17 N -0.155 5.155 18 C -0.125 4.125 19 C 0.232 3.768 20 O -0.447 6.447 21 N -0.217 5.217 22 C -0.510 4.510 23 H 0.116 0.884 24 C -0.211 4.211 25 N -0.541 5.541 26 Si 0.918 3.082 27 H -0.211 1.211 28 H -0.206 1.206 29 H -0.209 1.209 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.235 0.765 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.115 0.885 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.109 0.891 48 H 0.097 0.903 49 H 0.079 0.921 50 H 0.207 0.793 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.797 -3.872 -15.334 15.918 hybrid contribution 0.871 -1.176 0.363 1.508 sum 2.668 -5.048 -14.972 16.023 Atomic orbital electron populations 1.22599 0.86542 1.04193 1.00143 1.61700 1.08342 1.12972 1.41360 1.22163 0.95684 0.88709 1.00846 1.21604 0.94380 1.00234 0.99318 1.21591 1.00157 0.95126 0.99047 1.21528 0.91507 0.98212 1.03071 1.21620 0.96490 0.92235 0.94168 0.91863 1.20379 0.79008 0.86902 0.83207 1.90651 1.45378 1.72496 1.31786 1.45973 1.61555 1.17035 1.12844 1.21295 0.99403 0.82327 0.95131 1.23794 0.98629 0.94614 0.93625 0.89979 1.23153 0.99150 0.97514 0.97251 1.23760 1.02785 0.89919 0.95981 1.68865 1.24019 1.16523 1.06076 1.22570 0.94420 0.98569 0.96960 1.19535 0.87806 0.85212 0.84234 1.90549 1.14552 1.69102 1.70507 1.41955 1.08579 1.35928 1.35218 1.20551 0.96503 1.16553 1.17431 0.88352 1.26477 0.94984 1.00711 0.98907 1.70882 1.10433 1.34216 1.38554 0.83111 0.74813 0.74692 0.75574 1.21106 1.20615 1.20928 0.95852 0.91328 0.89339 0.94620 0.90338 0.91311 0.90964 0.91672 0.91178 0.91074 0.90411 0.76480 0.91225 0.90808 0.88508 0.90341 0.91393 0.89130 0.90328 0.92061 0.79321 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.09 60.07 0.55 0.72 16 2 N -0.52 -6.69 4.51 -236.32 -1.07 -7.75 16 3 C 0.05 0.57 5.46 -3.84 -0.02 0.55 16 4 C -0.12 -1.08 6.09 -26.65 -0.16 -1.24 16 5 C -0.12 -1.16 6.00 -26.61 -0.16 -1.31 16 6 C -0.10 -1.12 5.36 -26.65 -0.14 -1.27 16 7 C 0.07 0.86 2.24 -68.87 -0.15 0.71 16 8 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 9 C 0.52 7.47 6.26 -10.98 -0.07 7.40 16 10 O -0.53 -8.98 14.52 5.56 0.08 -8.90 16 11 N -0.72 -9.44 5.46 -60.29 -0.33 -9.76 16 12 C 0.14 1.71 5.82 -4.04 -0.02 1.69 16 13 C 0.00 0.04 3.23 -71.43 -0.23 -0.19 16 14 H 0.08 0.80 7.91 -51.93 -0.41 0.39 16 15 C -0.13 -1.33 8.00 -26.20 -0.21 -1.54 16 16 C 0.00 0.06 7.71 -7.54 -0.06 0.00 16 17 N -0.43 -6.56 5.39 -237.94 -1.28 -7.84 16 18 C 0.01 0.12 5.05 -4.98 -0.03 0.09 16 19 C 0.45 10.19 7.85 -10.99 -0.09 10.11 16 20 O -0.57 -15.30 16.01 5.54 0.09 -15.21 16 21 N -0.58 -14.03 5.28 -10.96 -0.06 -14.09 16 22 C -0.38 -10.50 9.68 -14.93 -0.14 -10.64 16 23 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 24 C -0.01 -0.22 5.50 -17.47 -0.10 -0.32 16 25 N -0.90 -24.65 13.68 55.50 0.76 -23.89 16 26 Si 1.09 23.98 29.92 -169.99 -5.09 18.90 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 29 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 30 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.77 8.09 -51.92 -0.42 0.35 16 32 H 0.09 1.33 5.62 -51.93 -0.29 1.04 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.40 5.15 6.22 -40.82 -0.25 4.90 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.99 7.87 -51.93 -0.41 0.58 16 44 H 0.10 0.98 7.94 -51.93 -0.41 0.57 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.81 7.42 -51.93 -0.39 0.43 16 47 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.08 1.10 6.27 -51.93 -0.33 0.78 16 49 H 0.06 0.88 7.30 -51.92 -0.38 0.50 16 50 H 0.37 8.31 6.73 -40.82 -0.27 8.04 16 51 H 0.26 6.81 6.78 -40.82 -0.28 6.53 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -34.20 400.55 -10.40 -44.60 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -8.50 Total: 13.17 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.04 Total: 4.74 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -1.98 Total: -63.34 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: 0.17 Total: -24.11 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.09 Total: 18.90 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.20 -10.40 -44.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670657399.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.550 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds