Wall clock time and date at job start Tue Mar 31 2020 22:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46842 * 110.99231 * 2 1 4 4 C 1.53037 * 109.51481 * 185.84892 * 3 2 1 5 5 C 1.53123 * 109.27544 * 300.81417 * 4 3 2 6 6 C 1.53114 * 109.16009 * 57.65493 * 5 4 3 7 7 C 1.46850 * 110.99431 * 124.20147 * 2 1 3 8 8 H 1.08994 * 109.46324 * 294.16359 * 7 2 1 9 9 C 1.50702 * 109.46038 * 54.14791 * 7 2 1 10 10 O 1.21281 * 120.00528 * 20.01973 * 9 7 2 11 11 N 1.34781 * 119.99355 * 200.01655 * 9 7 2 12 12 C 1.46503 * 119.99698 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46992 * 180.02562 * 12 11 9 14 14 H 1.09002 * 112.78362 * 284.19068 * 13 12 11 15 15 C 1.53516 * 113.47473 * 153.38525 * 13 12 11 16 16 C 1.53518 * 83.57131 * 219.20919 * 15 13 12 17 17 N 1.47481 * 87.93504 * 26.02351 * 16 15 13 18 18 C 1.46892 * 110.99987 * 221.29679 * 17 16 15 19 19 C 1.50695 * 109.47369 * 265.97010 * 18 17 16 20 20 O 1.21297 * 119.99943 * 0.02562 * 19 18 17 21 21 N 1.34779 * 120.00454 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00130 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00049 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99753 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00069 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99709 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99702 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99882 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99875 * 26 24 22 30 30 H 1.08994 * 109.47380 * 295.80111 * 1 2 3 31 31 H 1.09011 * 109.46821 * 55.79873 * 1 2 3 32 32 H 1.08997 * 109.47158 * 175.79115 * 1 2 3 33 33 H 1.09006 * 109.47360 * 65.82683 * 3 2 1 34 34 H 1.09005 * 109.45716 * 305.85481 * 3 2 1 35 35 H 1.09002 * 109.50033 * 180.87619 * 4 3 2 36 36 H 1.08992 * 109.53905 * 60.77163 * 4 3 2 37 37 H 1.09000 * 109.52283 * 297.75242 * 5 4 3 38 38 H 1.08997 * 109.52076 * 177.56011 * 5 4 3 39 39 H 1.09003 * 109.50463 * 182.40745 * 6 5 4 40 40 H 1.08995 * 109.50664 * 62.28687 * 6 5 4 41 41 H 0.96999 * 120.00380 * 0.02562 * 11 9 7 42 42 H 1.09000 * 109.46711 * 60.00169 * 12 11 9 43 43 H 1.09005 * 109.47336 * 300.00481 * 12 11 9 44 44 H 1.09000 * 114.16661 * 332.84947 * 15 13 12 45 45 H 1.08995 * 114.17126 * 105.36947 * 15 13 12 46 46 H 1.09001 * 113.47444 * 271.25249 * 16 15 13 47 47 H 1.08996 * 113.47052 * 140.79395 * 16 15 13 48 48 H 1.08998 * 109.47455 * 145.96954 * 18 17 16 49 49 H 1.09007 * 109.47046 * 25.97414 * 18 17 16 50 50 H 0.97006 * 119.99547 * 0.02562 * 21 19 18 51 51 H 0.97001 * 120.00308 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5180 1.3342 -0.1470 5 6 4.1188 0.5370 1.0141 6 6 3.5181 -0.8714 1.0208 7 6 1.9952 -0.7707 1.1339 8 1 1.7326 -0.2705 2.0660 9 6 1.3981 -2.1543 1.1208 10 8 0.9167 -2.5975 0.0997 11 7 1.3991 -2.8992 2.2441 12 6 0.8181 -4.2441 2.2316 13 6 0.9468 -4.8681 3.6226 14 1 1.9593 -5.2077 3.8408 15 6 -0.1294 -5.9210 3.9224 16 6 -0.1125 -5.2893 5.3215 17 7 0.3606 -4.0413 4.6939 18 6 1.4097 -3.4091 5.5048 19 6 0.7883 -2.3888 6.4233 20 8 -0.4107 -2.2065 6.4047 21 7 1.5647 -1.6795 7.2664 22 6 0.9993 -0.7516 8.1024 23 1 -0.0682 -0.5887 8.0851 24 6 1.7998 -0.0201 8.9711 25 7 3.0987 -0.2179 8.9917 26 14 1.0295 1.2447 10.1096 27 1 0.9909 2.5644 9.4297 28 1 1.8378 1.3508 11.3509 29 1 -0.3527 0.8245 10.4535 30 1 -0.3634 0.4473 0.9251 31 1 -0.3633 0.5777 -0.8500 32 1 -0.3633 -1.0249 -0.0754 33 1 1.7324 1.8610 0.9376 34 1 1.5631 1.9256 -0.8330 35 1 3.9097 2.3513 -0.1313 36 1 3.7817 0.8571 -1.0908 37 1 3.8887 1.0355 1.9558 38 1 5.1997 0.4714 0.8901 39 1 3.9099 -1.4301 1.8707 40 1 3.7811 -1.3836 0.0953 41 1 1.7838 -2.5446 3.0609 42 1 1.3471 -4.8615 1.5056 43 1 -0.2350 -4.1824 1.9573 44 1 -1.0619 -5.7737 3.3775 45 1 0.2306 -6.9492 3.8892 46 1 0.6172 -5.7413 5.9932 47 1 -1.1020 -5.2017 5.7702 48 1 2.1289 -2.9178 4.8495 49 1 1.9185 -4.1695 6.0974 50 1 2.5236 -1.8256 7.2815 51 1 3.4988 -0.8744 8.4002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670657399.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:35 Heat of formation + Delta-G solvation = -54.603471 kcal Electronic energy + Delta-G solvation = -30750.179128 eV Core-core repulsion = 26684.453315 eV Total energy + Delta-G solvation = -4065.725813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.81896 -41.16608 -39.80838 -38.94401 -36.35348 -35.71060 -34.44332 -33.26070 -32.52181 -31.94761 -29.44217 -27.80033 -27.35764 -25.40694 -25.26998 -24.08536 -23.60217 -21.70604 -21.49779 -20.88325 -20.57732 -19.97598 -18.47357 -18.10411 -17.43019 -17.39549 -16.62277 -16.54732 -16.35693 -16.15254 -15.86154 -15.65189 -15.49275 -15.36152 -15.13976 -15.05116 -14.58548 -14.23880 -14.13944 -14.03017 -13.81272 -13.37021 -13.28873 -12.99336 -12.85171 -12.76239 -12.65637 -12.42946 -12.39650 -12.07476 -11.96570 -11.94143 -11.88111 -11.70041 -11.63087 -11.52054 -11.39503 -10.67275 -10.45583 -10.12179 -10.10195 -9.78858 -9.42870 -8.92577 -6.06588 1.50069 1.50424 1.53382 1.79878 1.96019 2.01412 2.37297 2.68188 2.86407 3.14597 3.22040 3.46442 3.55542 3.72376 3.74380 3.90937 3.92602 4.01332 4.04027 4.09607 4.16642 4.23237 4.25174 4.32553 4.34178 4.37581 4.43260 4.51614 4.59163 4.68391 4.76051 4.77302 4.82564 4.90668 4.95565 4.96473 4.96775 5.11923 5.15714 5.16249 5.25371 5.39253 5.44655 5.60472 5.82289 5.94315 6.00326 6.00497 6.42044 6.57955 6.75746 7.14102 7.44222 7.94920 8.55394 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.003748 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.288897 B = 7469.012154 C = 9963.922375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.528 5.528 3 C 0.050 3.950 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.101 4.101 7 C 0.066 3.934 8 H 0.052 0.948 9 C 0.517 3.483 10 O -0.558 6.558 11 N -0.717 5.717 12 C 0.142 3.858 13 C 0.016 3.984 14 H 0.111 0.889 15 C -0.113 4.113 16 C -0.004 4.004 17 N -0.471 5.471 18 C 0.021 3.979 19 C 0.445 3.555 20 O -0.613 6.613 21 N -0.587 5.587 22 C -0.408 4.408 23 H 0.068 0.932 24 C -0.038 4.038 25 N -0.916 5.916 26 Si 1.131 2.869 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.280 1.280 30 H 0.015 0.985 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.401 0.599 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.113 0.887 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.103 0.897 49 H 0.089 0.911 50 H 0.385 0.615 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 -5.786 -15.796 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.254 5.254 3 C -0.077 4.077 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.139 4.139 7 C -0.046 4.046 8 H 0.070 0.930 9 C 0.303 3.697 10 O -0.436 6.436 11 N -0.369 5.369 12 C 0.018 3.982 13 C -0.094 4.094 14 H 0.129 0.871 15 C -0.151 4.151 16 C -0.133 4.133 17 N -0.194 5.194 18 C -0.111 4.111 19 C 0.233 3.767 20 O -0.498 6.498 21 N -0.227 5.227 22 C -0.538 4.538 23 H 0.086 0.914 24 C -0.237 4.237 25 N -0.555 5.555 26 Si 0.952 3.048 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.206 1.206 30 H 0.033 0.967 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.237 0.763 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.109 0.891 45 H 0.132 0.868 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.121 0.879 49 H 0.107 0.893 50 H 0.219 0.781 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.680 -4.525 -15.917 16.952 hybrid contribution 0.227 -1.031 0.493 1.165 sum 3.907 -5.556 -15.423 16.852 Atomic orbital electron populations 1.22518 0.87167 1.02929 1.00460 1.61759 1.07969 1.14299 1.41328 1.22287 0.96937 0.87483 1.00988 1.21608 0.93071 1.01328 0.99141 1.21609 1.01167 0.94160 0.98864 1.21541 0.89781 0.99290 1.03286 1.21676 0.97967 0.91235 0.93699 0.93005 1.20674 0.78527 0.87445 0.83024 1.90632 1.46798 1.73268 1.32900 1.45996 1.61011 1.17419 1.12463 1.21378 0.98476 0.82077 0.96271 1.23857 1.00321 0.93720 0.91456 0.87109 1.23095 0.98673 0.98909 0.94422 1.23856 1.01821 0.89716 0.97878 1.68820 1.24765 1.18345 1.07437 1.22453 0.94671 0.97456 0.96475 1.20770 0.87255 0.85038 0.83653 1.90519 1.16987 1.70538 1.71765 1.41985 1.09201 1.35999 1.35488 1.20472 0.95471 1.18520 1.19306 0.91406 1.27671 0.94837 1.01655 0.99514 1.70943 1.10770 1.34728 1.39044 0.82638 0.74364 0.73341 0.74478 1.19705 1.19625 1.20587 0.96681 0.89632 0.91564 0.95316 0.89139 0.89450 0.90923 0.92307 0.89379 0.90010 0.90826 0.76315 0.89666 0.92698 0.89051 0.86845 0.89748 0.91813 0.87861 0.89346 0.78134 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.09 127.69 1.16 1.62 16 2 N -0.53 -13.51 4.51 -901.57 -4.07 -17.58 16 3 C 0.05 1.02 5.46 86.33 0.47 1.49 16 4 C -0.11 -1.88 6.09 30.65 0.19 -1.70 16 5 C -0.12 -2.07 6.00 30.67 0.18 -1.89 16 6 C -0.10 -2.03 5.36 30.65 0.16 -1.87 16 7 C 0.07 1.69 2.24 44.19 0.10 1.79 16 8 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 9 C 0.52 14.82 6.26 87.66 0.55 15.37 16 10 O -0.56 -19.17 14.52 -3.03 -0.04 -19.22 16 11 N -0.72 -18.13 5.46 -463.04 -2.53 -20.66 16 12 C 0.14 3.19 5.82 86.38 0.50 3.69 16 13 C 0.02 0.31 3.23 42.19 0.14 0.45 16 14 H 0.11 1.62 7.91 -2.39 -0.02 1.61 16 15 C -0.11 -1.96 8.00 30.94 0.25 -1.71 16 16 C 0.00 -0.10 7.71 83.57 0.64 0.55 16 17 N -0.47 -13.66 5.39 -906.71 -4.88 -18.54 16 18 C 0.02 0.65 5.05 85.56 0.43 1.08 16 19 C 0.45 20.44 7.85 87.66 0.69 21.13 16 20 O -0.61 -34.23 16.01 -3.08 -0.05 -34.28 16 21 N -0.59 -28.75 5.28 -306.98 -1.62 -30.37 16 22 C -0.41 -22.97 9.68 84.04 0.81 -22.16 16 23 H 0.07 4.18 7.16 -2.91 -0.02 4.15 16 24 C -0.04 -2.03 5.50 84.93 0.47 -1.56 16 25 N -0.92 -49.63 13.68 21.66 0.30 -49.33 16 26 Si 1.13 48.10 29.92 68.60 2.05 50.15 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 30 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.08 1.92 8.09 -2.38 -0.02 1.90 16 32 H 0.07 2.07 5.62 -2.39 -0.01 2.06 16 33 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.09 1.60 8.09 -2.38 -0.02 1.58 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.40 9.84 6.22 -92.71 -0.58 9.26 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.05 1.45 7.87 -2.38 -0.02 1.44 16 44 H 0.09 1.71 7.94 -2.39 -0.02 1.69 16 45 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.08 1.79 7.42 -2.39 -0.02 1.77 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.10 2.64 6.27 -2.39 -0.01 2.62 16 49 H 0.09 2.26 7.30 -2.38 -0.02 2.24 16 50 H 0.38 17.00 6.73 -92.70 -0.62 16.38 16 51 H 0.26 13.52 6.78 -92.71 -0.63 12.90 16 Total: -1.00 -76.53 400.55 -4.22 -80.75 By element: Atomic # 1 Polarization: 42.90 SS G_CDS: -0.12 Total: 42.78 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 6.75 Total: 16.29 kcal Atomic # 7 Polarization: -123.67 SS G_CDS: -12.81 Total: -136.48 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -0.09 Total: -53.49 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.05 Total: 50.15 kcal Total: -76.53 -4.22 -80.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670657399.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.147 kcal (2) G-P(sol) polarization free energy of solvation -76.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds