Wall clock time and date at job start Tue Mar 31 2020 21:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46507 * 109.47051 * 2 1 4 4 N 1.40082 * 126.03598 * 90.02264 * 3 2 1 5 5 C 1.30836 * 108.20263 * 179.97438 * 4 3 2 6 6 C 1.50703 * 125.89773 * 180.02562 * 5 4 3 7 7 C 1.39867 * 108.20683 * 0.02562 * 5 4 3 8 8 C 1.50700 * 126.04348 * 179.97438 * 7 5 4 9 9 C 1.50708 * 109.46716 * 90.02560 * 8 7 5 10 10 O 1.21277 * 120.00423 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99399 * 180.02562 * 9 8 7 12 12 C 1.46503 * 120.00474 * 359.97438 * 11 9 8 13 13 C 1.46504 * 119.99567 * 179.97438 * 11 9 8 14 14 C 1.53005 * 109.47028 * 269.99510 * 13 11 9 15 15 H 1.09005 * 109.47310 * 305.00257 * 14 13 11 16 16 O 1.42901 * 109.47056 * 65.00195 * 14 13 11 17 17 C 1.52992 * 109.47277 * 185.00044 * 14 13 11 18 18 N 1.46499 * 109.47267 * 180.02562 * 17 14 13 19 19 C 1.36935 * 119.99938 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 17 21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99892 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99858 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47174 * 89.99644 * 23 21 19 25 25 H 1.48494 * 109.46800 * 209.99692 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99394 * 23 21 19 27 27 C 1.34949 * 126.03586 * 270.31360 * 3 2 1 28 28 C 1.50693 * 126.12703 * 359.97438 * 27 3 2 29 29 H 1.08996 * 109.46776 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46595 * 300.00062 * 1 2 3 31 31 H 1.08993 * 109.46893 * 59.99836 * 1 2 3 32 32 H 1.08996 * 109.47262 * 240.00023 * 2 1 3 33 33 H 1.09000 * 109.47322 * 119.99641 * 2 1 3 34 34 H 1.09000 * 109.47262 * 269.97811 * 6 5 4 35 35 H 1.08998 * 109.47095 * 29.97905 * 6 5 4 36 36 H 1.08997 * 109.47269 * 149.97753 * 6 5 4 37 37 H 1.08994 * 109.47313 * 330.02538 * 8 7 5 38 38 H 1.08993 * 109.47046 * 210.02147 * 8 7 5 39 39 H 1.08997 * 109.47032 * 270.00001 * 12 11 9 40 40 H 1.08997 * 109.46896 * 30.00104 * 12 11 9 41 41 H 1.08998 * 109.46684 * 150.00329 * 12 11 9 42 42 H 1.09005 * 109.47213 * 150.00096 * 13 11 9 43 43 H 1.08996 * 109.47319 * 29.99428 * 13 11 9 44 44 H 0.96700 * 113.99645 * 59.99638 * 16 14 13 45 45 H 1.09004 * 109.47330 * 60.00123 * 17 14 13 46 46 H 1.09005 * 109.47124 * 300.00327 * 17 14 13 47 47 H 0.96999 * 119.99984 * 359.97438 * 18 17 14 48 48 H 0.97005 * 119.99715 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.47183 * 270.18077 * 28 27 3 50 50 H 1.08997 * 109.47699 * 30.18218 * 28 27 3 51 51 H 1.09004 * 109.47232 * 150.18035 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2935 2.1581 1.1328 5 6 2.7090 3.3322 0.7321 6 6 3.1151 4.4774 1.6236 7 6 2.7113 3.3411 -0.6666 8 6 3.1190 4.4955 -1.5453 9 6 4.5944 4.4062 -1.8395 10 8 5.2503 3.4952 -1.3804 11 7 5.1851 5.3394 -2.6120 12 6 4.3929 6.4402 -3.1661 13 6 6.6194 5.2529 -2.8975 14 6 7.3998 6.0153 -1.8248 15 1 7.0296 7.0388 -1.7645 16 8 7.2264 5.3708 -0.5612 17 6 8.8856 6.0311 -2.1895 18 7 9.6329 6.7606 -1.1620 19 6 10.9898 6.9053 -1.2755 20 1 11.5098 6.4780 -2.1201 21 6 11.6979 7.5970 -0.3022 22 7 13.0022 7.7356 -0.4110 23 14 10.7996 8.3297 1.1627 24 1 10.7486 7.3322 2.2615 25 1 11.5189 9.5426 1.6281 26 1 9.4174 8.6968 0.7627 27 6 2.2774 2.1318 -1.0913 28 6 2.1166 1.6990 -2.5257 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.2443 5.0968 1.8388 35 1 3.5216 4.0856 2.5559 36 1 3.8729 5.0782 1.1209 37 1 2.9067 5.4342 -1.0338 38 1 2.5592 4.4562 -2.4797 39 1 3.9962 6.1487 -4.1386 40 1 3.5683 6.6699 -2.4913 41 1 5.0250 7.3207 -3.2807 42 1 6.8224 5.6911 -3.8747 43 1 6.9276 4.2074 -2.8969 44 1 7.5348 4.4545 -0.5414 45 1 9.0179 6.5228 -3.1533 46 1 9.2558 5.0077 -2.2498 47 1 9.1665 7.1411 -0.4014 48 1 13.4970 8.2186 0.2693 49 1 3.0459 1.2496 -2.8760 50 1 1.3105 0.9689 -2.5969 51 1 1.8773 2.5656 -3.1421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677129066.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:23 Heat of formation + Delta-G solvation = 0.059422 kcal Electronic energy + Delta-G solvation = -30240.741588 eV Core-core repulsion = 26177.386136 eV Total energy + Delta-G solvation = -4063.355452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.59271 -39.78668 -37.34683 -35.32227 -35.15799 -34.06740 -33.18943 -31.79966 -31.38736 -30.11065 -29.08377 -27.48071 -27.00555 -26.51347 -24.97044 -23.18380 -22.25577 -21.17979 -20.14513 -19.58527 -18.93717 -17.66454 -17.17874 -16.86069 -16.33229 -15.97288 -15.52044 -15.13238 -15.02648 -14.72898 -14.46796 -14.31106 -13.73829 -13.64424 -13.49720 -13.37480 -13.25782 -13.15353 -13.14000 -13.06902 -12.62769 -12.59128 -12.40517 -12.33420 -12.19762 -12.05510 -12.01689 -11.76205 -11.65635 -11.50094 -11.17150 -10.81062 -10.73439 -10.52423 -10.13536 -9.86112 -9.63859 -9.51604 -9.12131 -8.86884 -8.48471 -8.37083 -7.18646 -5.72838 -3.07797 1.73558 2.31512 2.55424 2.75950 3.11346 3.45041 3.50863 3.52100 4.18516 4.38830 4.57682 4.60374 4.65478 4.67144 4.72905 4.79734 4.81859 4.91117 4.95480 4.98408 5.04873 5.15044 5.19839 5.24789 5.27095 5.32931 5.35572 5.39361 5.48328 5.53360 5.55958 5.57212 5.62334 5.63819 5.69409 5.88856 5.90840 5.95354 5.99413 6.07044 6.46112 6.49291 6.62216 6.68987 6.92473 7.39727 7.68272 8.01691 8.14704 8.31155 8.46321 9.26700 9.99162 10.19842 11.45365 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.002465 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.344987 B =11357.707971 C =12005.680278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.130 3.870 3 N -0.371 5.371 4 N -0.299 5.299 5 C 0.095 3.905 6 C -0.075 4.075 7 C -0.218 4.218 8 C -0.056 4.056 9 C 0.517 3.483 10 O -0.522 6.522 11 N -0.616 5.616 12 C 0.077 3.923 13 C 0.087 3.913 14 C 0.083 3.917 15 H 0.093 0.907 16 O -0.550 6.550 17 C 0.129 3.871 18 N -0.749 5.749 19 C -0.245 4.245 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.935 5.935 23 Si 0.888 3.112 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.277 1.277 27 C 0.097 3.903 28 C -0.092 4.092 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.376 0.624 45 H 0.032 0.968 46 H 0.028 0.972 47 H 0.366 0.634 48 H 0.259 0.741 49 H 0.081 0.919 50 H 0.068 0.932 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.212 -11.368 -6.758 33.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.153 5.153 4 N -0.121 5.121 5 C -0.071 4.071 6 C -0.133 4.133 7 C -0.229 4.229 8 C -0.097 4.097 9 C 0.305 3.695 10 O -0.397 6.397 11 N -0.350 5.350 12 C -0.067 4.067 13 C -0.037 4.037 14 C 0.022 3.978 15 H 0.111 0.889 16 O -0.355 6.355 17 C 0.001 3.999 18 N -0.395 5.395 19 C -0.375 4.375 20 H 0.106 0.894 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.718 3.282 24 H -0.210 1.210 25 H -0.219 1.219 26 H -0.203 1.203 27 C -0.030 4.030 28 C -0.151 4.151 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.224 0.776 45 H 0.050 0.950 46 H 0.046 0.954 47 H 0.200 0.800 48 H 0.069 0.931 49 H 0.099 0.901 50 H 0.087 0.913 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -31.194 -12.216 -5.431 33.938 hybrid contribution -0.009 0.598 0.081 0.603 sum -31.204 -11.618 -5.350 33.723 Atomic orbital electron populations 1.22193 0.94464 1.02929 1.03147 1.21601 0.94971 0.78244 1.04340 1.48374 1.52113 1.11615 1.03245 1.77297 1.23591 1.03631 1.07540 1.22118 0.97568 0.94128 0.93310 1.20191 1.01468 0.93450 0.98229 1.18980 1.14751 0.96040 0.93131 1.19899 0.92748 0.97579 0.99465 1.20600 0.89732 0.81460 0.77704 1.90671 1.65540 1.33797 1.49671 1.47771 1.08957 1.26821 1.51477 1.21807 0.96322 0.89975 0.98563 1.22186 0.79880 1.02695 0.98924 1.22526 0.94721 0.96530 0.84034 0.88862 1.86503 1.86136 1.30735 1.32168 1.21214 0.89457 0.96178 0.93057 1.42572 1.05357 1.66086 1.25490 1.19053 0.81674 1.29292 1.07456 0.89355 1.24670 0.95341 1.00630 0.98557 1.69711 1.05510 1.46952 1.36104 0.86487 0.79002 0.78842 0.83840 1.21007 1.21877 1.20282 1.20682 1.00097 0.91656 0.90554 1.20454 1.02843 1.02468 0.89298 0.90590 0.91612 0.92127 0.89164 0.88759 0.90772 0.90848 0.90207 0.88454 0.89035 0.92694 0.91044 0.90838 0.89747 0.89521 0.77599 0.95009 0.95377 0.80033 0.93098 0.90074 0.91275 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.24 37.16 0.38 -0.57 16 2 C 0.13 0.96 6.78 -4.04 -0.03 0.93 16 3 N -0.37 -4.23 3.61 -57.14 -0.21 -4.44 16 4 N -0.30 -4.20 12.58 33.67 0.42 -3.78 16 5 C 0.10 1.27 7.22 -82.41 -0.59 0.67 16 6 C -0.07 -0.84 10.12 36.01 0.36 -0.48 16 7 C -0.22 -2.59 4.59 -105.05 -0.48 -3.07 16 8 C -0.06 -0.53 4.20 -29.03 -0.12 -0.66 16 9 C 0.52 6.50 7.29 -10.98 -0.08 6.42 16 10 O -0.52 -8.64 14.59 -2.21 -0.03 -8.67 16 11 N -0.62 -6.74 2.86 -181.56 -0.52 -7.26 16 12 C 0.08 0.54 10.24 59.85 0.61 1.16 16 13 C 0.09 1.07 5.11 -4.04 -0.02 1.05 16 14 C 0.08 1.31 3.30 -26.73 -0.09 1.22 16 15 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 16 O -0.55 -9.92 11.95 -43.00 -0.51 -10.43 16 17 C 0.13 2.50 5.92 -4.05 -0.02 2.48 16 18 N -0.75 -18.57 5.30 -59.91 -0.32 -18.88 16 19 C -0.24 -7.17 10.47 -15.06 -0.16 -7.32 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -30.07 13.97 55.49 0.78 -29.29 16 23 Si 0.89 23.24 27.74 -169.99 -4.71 18.53 16 24 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.28 -6.91 6.52 56.52 0.37 -6.54 16 27 C 0.10 1.05 6.93 -82.27 -0.57 0.48 16 28 C -0.09 -0.64 9.68 36.00 0.35 -0.29 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.49 7.68 -51.93 -0.40 0.09 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16 37 H 0.10 0.80 7.18 -51.93 -0.37 0.43 16 38 H 0.09 0.62 7.10 -51.93 -0.37 0.25 16 39 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.40 6.44 -51.93 -0.33 0.07 16 41 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 42 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 43 H 0.09 1.17 7.42 -51.93 -0.39 0.79 16 44 H 0.38 6.53 8.75 45.56 0.40 6.92 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.37 9.17 5.40 -40.82 -0.22 8.95 16 48 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.07 0.34 7.74 -51.93 -0.40 -0.06 16 51 H 0.08 0.46 7.14 -51.93 -0.37 0.08 16 LS Contribution 415.76 15.07 6.27 6.27 Total: -1.00 -38.78 415.76 -7.34 -46.12 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.95 Total: 9.81 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -0.56 Total: 2.03 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: 0.16 Total: -63.65 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.55 Total: -19.10 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.71 Total: 18.53 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -38.78 -7.34 -46.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677129066.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.181 kcal (2) G-P(sol) polarization free energy of solvation -38.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds