Wall clock time and date at job start Tue Mar 31 2020 21:17:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46507 * 109.47051 * 2 1
4 4 N 1.40082 * 126.03598 * 90.02264 * 3 2 1
5 5 C 1.30836 * 108.20263 * 179.97438 * 4 3 2
6 6 C 1.50703 * 125.89773 * 180.02562 * 5 4 3
7 7 C 1.39867 * 108.20683 * 0.02562 * 5 4 3
8 8 C 1.50700 * 126.04348 * 179.97438 * 7 5 4
9 9 C 1.50708 * 109.46716 * 90.02560 * 8 7 5
10 10 O 1.21277 * 120.00423 * 359.97438 * 9 8 7
11 11 N 1.34775 * 119.99399 * 180.02562 * 9 8 7
12 12 C 1.46503 * 120.00474 * 359.97438 * 11 9 8
13 13 C 1.46504 * 119.99567 * 179.97438 * 11 9 8
14 14 C 1.53005 * 109.47028 * 269.99510 * 13 11 9
15 15 H 1.09005 * 109.47310 * 305.00257 * 14 13 11
16 16 O 1.42901 * 109.47056 * 65.00195 * 14 13 11
17 17 C 1.52992 * 109.47277 * 185.00044 * 14 13 11
18 18 N 1.46499 * 109.47267 * 180.02562 * 17 14 13
19 19 C 1.36935 * 119.99938 * 179.97438 * 18 17 14
20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 17
21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 17
22 22 N 1.31614 * 119.99892 * 179.97438 * 21 19 18
23 23 Si 1.86803 * 119.99858 * 0.02562 * 21 19 18
24 24 H 1.48498 * 109.47174 * 89.99644 * 23 21 19
25 25 H 1.48494 * 109.46800 * 209.99692 * 23 21 19
26 26 H 1.48504 * 109.46913 * 329.99394 * 23 21 19
27 27 C 1.34949 * 126.03586 * 270.31360 * 3 2 1
28 28 C 1.50693 * 126.12703 * 359.97438 * 27 3 2
29 29 H 1.08996 * 109.46776 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.46595 * 300.00062 * 1 2 3
31 31 H 1.08993 * 109.46893 * 59.99836 * 1 2 3
32 32 H 1.08996 * 109.47262 * 240.00023 * 2 1 3
33 33 H 1.09000 * 109.47322 * 119.99641 * 2 1 3
34 34 H 1.09000 * 109.47262 * 269.97811 * 6 5 4
35 35 H 1.08998 * 109.47095 * 29.97905 * 6 5 4
36 36 H 1.08997 * 109.47269 * 149.97753 * 6 5 4
37 37 H 1.08994 * 109.47313 * 330.02538 * 8 7 5
38 38 H 1.08993 * 109.47046 * 210.02147 * 8 7 5
39 39 H 1.08997 * 109.47032 * 270.00001 * 12 11 9
40 40 H 1.08997 * 109.46896 * 30.00104 * 12 11 9
41 41 H 1.08998 * 109.46684 * 150.00329 * 12 11 9
42 42 H 1.09005 * 109.47213 * 150.00096 * 13 11 9
43 43 H 1.08996 * 109.47319 * 29.99428 * 13 11 9
44 44 H 0.96700 * 113.99645 * 59.99638 * 16 14 13
45 45 H 1.09004 * 109.47330 * 60.00123 * 17 14 13
46 46 H 1.09005 * 109.47124 * 300.00327 * 17 14 13
47 47 H 0.96999 * 119.99984 * 359.97438 * 18 17 14
48 48 H 0.97005 * 119.99715 * 180.02562 * 22 21 19
49 49 H 1.09004 * 109.47183 * 270.18077 * 28 27 3
50 50 H 1.08997 * 109.47699 * 30.18218 * 28 27 3
51 51 H 1.09004 * 109.47232 * 150.18035 * 28 27 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3813 0.0000
4 7 2.2935 2.1581 1.1328
5 6 2.7090 3.3322 0.7321
6 6 3.1151 4.4774 1.6236
7 6 2.7113 3.3411 -0.6666
8 6 3.1190 4.4955 -1.5453
9 6 4.5944 4.4062 -1.8395
10 8 5.2503 3.4952 -1.3804
11 7 5.1851 5.3394 -2.6120
12 6 4.3929 6.4402 -3.1661
13 6 6.6194 5.2529 -2.8975
14 6 7.3998 6.0153 -1.8248
15 1 7.0296 7.0388 -1.7645
16 8 7.2264 5.3708 -0.5612
17 6 8.8856 6.0311 -2.1895
18 7 9.6329 6.7606 -1.1620
19 6 10.9898 6.9053 -1.2755
20 1 11.5098 6.4780 -2.1201
21 6 11.6979 7.5970 -0.3022
22 7 13.0022 7.7356 -0.4110
23 14 10.7996 8.3297 1.1627
24 1 10.7486 7.3322 2.2615
25 1 11.5189 9.5426 1.6281
26 1 9.4174 8.6968 0.7627
27 6 2.2774 2.1318 -1.0913
28 6 2.1166 1.6990 -2.5257
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3632 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8899
32 1 1.8934 -0.5138 -0.8899
33 1 1.8934 -0.5138 0.8900
34 1 2.2443 5.0968 1.8388
35 1 3.5216 4.0856 2.5559
36 1 3.8729 5.0782 1.1209
37 1 2.9067 5.4342 -1.0338
38 1 2.5592 4.4562 -2.4797
39 1 3.9962 6.1487 -4.1386
40 1 3.5683 6.6699 -2.4913
41 1 5.0250 7.3207 -3.2807
42 1 6.8224 5.6911 -3.8747
43 1 6.9276 4.2074 -2.8969
44 1 7.5348 4.4545 -0.5414
45 1 9.0179 6.5228 -3.1533
46 1 9.2558 5.0077 -2.2498
47 1 9.1665 7.1411 -0.4014
48 1 13.4970 8.2186 0.2693
49 1 3.0459 1.2496 -2.8760
50 1 1.3105 0.9689 -2.5969
51 1 1.8773 2.5656 -3.1421
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001677129066.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:17:23
Heat of formation + Delta-G solvation = 0.059422 kcal
Electronic energy + Delta-G solvation = -30240.741588 eV
Core-core repulsion = 26177.386136 eV
Total energy + Delta-G solvation = -4063.355452 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.59271 -39.78668 -37.34683 -35.32227 -35.15799 -34.06740 -33.18943 -31.79966
-31.38736 -30.11065 -29.08377 -27.48071 -27.00555 -26.51347 -24.97044 -23.18380
-22.25577 -21.17979 -20.14513 -19.58527 -18.93717 -17.66454 -17.17874 -16.86069
-16.33229 -15.97288 -15.52044 -15.13238 -15.02648 -14.72898 -14.46796 -14.31106
-13.73829 -13.64424 -13.49720 -13.37480 -13.25782 -13.15353 -13.14000 -13.06902
-12.62769 -12.59128 -12.40517 -12.33420 -12.19762 -12.05510 -12.01689 -11.76205
-11.65635 -11.50094 -11.17150 -10.81062 -10.73439 -10.52423 -10.13536 -9.86112
-9.63859 -9.51604 -9.12131 -8.86884 -8.48471 -8.37083 -7.18646 -5.72838
-3.07797 1.73558 2.31512 2.55424 2.75950 3.11346 3.45041 3.50863
3.52100 4.18516 4.38830 4.57682 4.60374 4.65478 4.67144 4.72905
4.79734 4.81859 4.91117 4.95480 4.98408 5.04873 5.15044 5.19839
5.24789 5.27095 5.32931 5.35572 5.39361 5.48328 5.53360 5.55958
5.57212 5.62334 5.63819 5.69409 5.88856 5.90840 5.95354 5.99413
6.07044 6.46112 6.49291 6.62216 6.68987 6.92473 7.39727 7.68272
8.01691 8.14704 8.31155 8.46321 9.26700 9.99162 10.19842 11.45365
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.017547 B = 0.002465 C = 0.002332
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1595.344987 B =11357.707971 C =12005.680278
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.130 3.870
3 N -0.371 5.371
4 N -0.299 5.299
5 C 0.095 3.905
6 C -0.075 4.075
7 C -0.218 4.218
8 C -0.056 4.056
9 C 0.517 3.483
10 O -0.522 6.522
11 N -0.616 5.616
12 C 0.077 3.923
13 C 0.087 3.913
14 C 0.083 3.917
15 H 0.093 0.907
16 O -0.550 6.550
17 C 0.129 3.871
18 N -0.749 5.749
19 C -0.245 4.245
20 H 0.089 0.911
21 C 0.004 3.996
22 N -0.935 5.935
23 Si 0.888 3.112
24 H -0.283 1.283
25 H -0.292 1.292
26 H -0.277 1.277
27 C 0.097 3.903
28 C -0.092 4.092
29 H 0.075 0.925
30 H 0.065 0.935
31 H 0.060 0.940
32 H 0.090 0.910
33 H 0.094 0.906
34 H 0.074 0.926
35 H 0.073 0.927
36 H 0.079 0.921
37 H 0.097 0.903
38 H 0.091 0.909
39 H 0.054 0.946
40 H 0.071 0.929
41 H 0.073 0.927
42 H 0.084 0.916
43 H 0.086 0.914
44 H 0.376 0.624
45 H 0.032 0.968
46 H 0.028 0.972
47 H 0.366 0.634
48 H 0.259 0.741
49 H 0.081 0.919
50 H 0.068 0.932
51 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -31.212 -11.368 -6.758 33.898
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C 0.008 3.992
3 N -0.153 5.153
4 N -0.121 5.121
5 C -0.071 4.071
6 C -0.133 4.133
7 C -0.229 4.229
8 C -0.097 4.097
9 C 0.305 3.695
10 O -0.397 6.397
11 N -0.350 5.350
12 C -0.067 4.067
13 C -0.037 4.037
14 C 0.022 3.978
15 H 0.111 0.889
16 O -0.355 6.355
17 C 0.001 3.999
18 N -0.395 5.395
19 C -0.375 4.375
20 H 0.106 0.894
21 C -0.192 4.192
22 N -0.583 5.583
23 Si 0.718 3.282
24 H -0.210 1.210
25 H -0.219 1.219
26 H -0.203 1.203
27 C -0.030 4.030
28 C -0.151 4.151
29 H 0.094 0.906
30 H 0.084 0.916
31 H 0.079 0.921
32 H 0.108 0.892
33 H 0.112 0.888
34 H 0.092 0.908
35 H 0.092 0.908
36 H 0.098 0.902
37 H 0.115 0.885
38 H 0.110 0.890
39 H 0.073 0.927
40 H 0.090 0.910
41 H 0.092 0.908
42 H 0.103 0.897
43 H 0.105 0.895
44 H 0.224 0.776
45 H 0.050 0.950
46 H 0.046 0.954
47 H 0.200 0.800
48 H 0.069 0.931
49 H 0.099 0.901
50 H 0.087 0.913
51 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -31.194 -12.216 -5.431 33.938
hybrid contribution -0.009 0.598 0.081 0.603
sum -31.204 -11.618 -5.350 33.723
Atomic orbital electron populations
1.22193 0.94464 1.02929 1.03147 1.21601 0.94971 0.78244 1.04340
1.48374 1.52113 1.11615 1.03245 1.77297 1.23591 1.03631 1.07540
1.22118 0.97568 0.94128 0.93310 1.20191 1.01468 0.93450 0.98229
1.18980 1.14751 0.96040 0.93131 1.19899 0.92748 0.97579 0.99465
1.20600 0.89732 0.81460 0.77704 1.90671 1.65540 1.33797 1.49671
1.47771 1.08957 1.26821 1.51477 1.21807 0.96322 0.89975 0.98563
1.22186 0.79880 1.02695 0.98924 1.22526 0.94721 0.96530 0.84034
0.88862 1.86503 1.86136 1.30735 1.32168 1.21214 0.89457 0.96178
0.93057 1.42572 1.05357 1.66086 1.25490 1.19053 0.81674 1.29292
1.07456 0.89355 1.24670 0.95341 1.00630 0.98557 1.69711 1.05510
1.46952 1.36104 0.86487 0.79002 0.78842 0.83840 1.21007 1.21877
1.20282 1.20682 1.00097 0.91656 0.90554 1.20454 1.02843 1.02468
0.89298 0.90590 0.91612 0.92127 0.89164 0.88759 0.90772 0.90848
0.90207 0.88454 0.89035 0.92694 0.91044 0.90838 0.89747 0.89521
0.77599 0.95009 0.95377 0.80033 0.93098 0.90074 0.91275 0.89906
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -0.95 10.24 37.16 0.38 -0.57 16
2 C 0.13 0.96 6.78 -4.04 -0.03 0.93 16
3 N -0.37 -4.23 3.61 -57.14 -0.21 -4.44 16
4 N -0.30 -4.20 12.58 33.67 0.42 -3.78 16
5 C 0.10 1.27 7.22 -82.41 -0.59 0.67 16
6 C -0.07 -0.84 10.12 36.01 0.36 -0.48 16
7 C -0.22 -2.59 4.59 -105.05 -0.48 -3.07 16
8 C -0.06 -0.53 4.20 -29.03 -0.12 -0.66 16
9 C 0.52 6.50 7.29 -10.98 -0.08 6.42 16
10 O -0.52 -8.64 14.59 -2.21 -0.03 -8.67 16
11 N -0.62 -6.74 2.86 -181.56 -0.52 -7.26 16
12 C 0.08 0.54 10.24 59.85 0.61 1.16 16
13 C 0.09 1.07 5.11 -4.04 -0.02 1.05 16
14 C 0.08 1.31 3.30 -26.73 -0.09 1.22 16
15 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16
16 O -0.55 -9.92 11.95 -43.00 -0.51 -10.43 16
17 C 0.13 2.50 5.92 -4.05 -0.02 2.48 16
18 N -0.75 -18.57 5.30 -59.91 -0.32 -18.88 16
19 C -0.24 -7.17 10.47 -15.06 -0.16 -7.32 16
20 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16
21 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16
22 N -0.93 -30.07 13.97 55.49 0.78 -29.29 16
23 Si 0.89 23.24 27.74 -169.99 -4.71 18.53 16
24 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16
25 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16
26 H -0.28 -6.91 6.52 56.52 0.37 -6.54 16
27 C 0.10 1.05 6.93 -82.27 -0.57 0.48 16
28 C -0.09 -0.64 9.68 36.00 0.35 -0.29 16
29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16
30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16
32 H 0.09 0.49 7.68 -51.93 -0.40 0.09 16
33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
36 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16
37 H 0.10 0.80 7.18 -51.93 -0.37 0.43 16
38 H 0.09 0.62 7.10 -51.93 -0.37 0.25 16
39 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16
40 H 0.07 0.40 6.44 -51.93 -0.33 0.07 16
41 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16
42 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16
43 H 0.09 1.17 7.42 -51.93 -0.39 0.79 16
44 H 0.38 6.53 8.75 45.56 0.40 6.92 16
45 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16
46 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
47 H 0.37 9.17 5.40 -40.82 -0.22 8.95 16
48 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16
49 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
50 H 0.07 0.34 7.74 -51.93 -0.40 -0.06 16
51 H 0.08 0.46 7.14 -51.93 -0.37 0.08 16
LS Contribution 415.76 15.07 6.27 6.27
Total: -1.00 -38.78 415.76 -7.34 -46.12
By element:
Atomic # 1 Polarization: 17.76 SS G_CDS: -7.95 Total: 9.81 kcal
Atomic # 6 Polarization: 2.59 SS G_CDS: -0.56 Total: 2.03 kcal
Atomic # 7 Polarization: -63.81 SS G_CDS: 0.16 Total: -63.65 kcal
Atomic # 8 Polarization: -18.56 SS G_CDS: -0.55 Total: -19.10 kcal
Atomic # 14 Polarization: 23.24 SS G_CDS: -4.71 Total: 18.53 kcal
Total LS contribution 6.27 Total: 6.27 kcal
Total: -38.78 -7.34 -46.12 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001677129066.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.181 kcal
(2) G-P(sol) polarization free energy of solvation -38.779 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.401 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.121 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.059 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds