Wall clock time and date at job start Tue Mar 31 2020 21:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47055 * 2 1 4 4 N 1.39930 * 125.74724 * 269.97057 * 3 2 1 5 5 C 1.30454 * 108.89513 * 180.02562 * 4 3 2 6 6 C 1.41291 * 108.02056 * 0.02562 * 5 4 3 7 7 C 1.47431 * 126.41731 * 179.97438 * 6 5 4 8 8 O 1.21603 * 120.00272 * 159.92813 * 7 6 5 9 9 N 1.34782 * 119.99745 * 339.93194 * 7 6 5 10 10 C 1.46501 * 120.00016 * 5.12031 * 9 7 6 11 11 C 1.46502 * 119.99945 * 185.12060 * 9 7 6 12 12 C 1.52998 * 109.46882 * 89.99764 * 11 9 7 13 13 O 1.42898 * 109.46983 * 65.00249 * 12 11 9 14 14 C 1.42908 * 113.99611 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46842 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.46886 * 64.99865 * 15 14 13 17 17 C 1.46500 * 120.00351 * 269.99791 * 16 15 14 18 18 C 1.36936 * 119.99755 * 90.00403 * 16 15 14 19 19 H 1.07995 * 120.00281 * 21.95228 * 18 16 15 20 20 C 1.38821 * 119.99709 * 201.95514 * 18 16 15 21 21 N 1.31621 * 120.00083 * 11.49266 * 20 18 16 22 22 Si 1.86795 * 119.99813 * 191.48822 * 20 18 16 23 23 H 1.48504 * 109.47535 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46997 * 120.00187 * 22 20 18 25 25 H 1.48499 * 109.47437 * 239.99955 * 22 20 18 26 26 C 1.34255 * 125.75287 * 90.00489 * 3 2 1 27 27 C 1.50688 * 126.29558 * 0.23291 * 26 3 2 28 28 H 1.09010 * 109.46941 * 300.00161 * 1 2 3 29 29 H 1.09003 * 109.47121 * 60.00052 * 1 2 3 30 30 H 1.08993 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47118 * 239.99757 * 2 1 3 32 32 H 1.09003 * 109.47121 * 119.99948 * 2 1 3 33 33 H 1.07994 * 125.99249 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47528 * 86.78534 * 10 9 7 35 35 H 1.09003 * 109.47191 * 206.79001 * 10 9 7 36 36 H 1.09008 * 109.46953 * 326.78482 * 10 9 7 37 37 H 1.08997 * 109.46495 * 209.99767 * 11 9 7 38 38 H 1.09003 * 109.46842 * 329.99621 * 11 9 7 39 39 H 1.09001 * 109.46644 * 185.00001 * 12 11 9 40 40 H 1.08994 * 109.47203 * 304.99818 * 12 11 9 41 41 H 1.08994 * 109.46820 * 299.99451 * 14 13 12 42 42 H 1.08994 * 109.47340 * 60.00349 * 14 13 12 43 43 H 1.08997 * 109.47284 * 184.99901 * 15 14 13 44 44 H 1.08996 * 109.46931 * 305.00178 * 15 14 13 45 45 H 1.09000 * 109.47296 * 94.25694 * 17 16 15 46 46 H 1.08996 * 109.47197 * 214.26850 * 17 16 15 47 47 H 1.09004 * 109.46870 * 334.26563 * 17 16 15 48 48 H 0.96996 * 119.99673 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.47523 * 269.72077 * 27 26 3 50 50 H 1.09000 * 109.47432 * 29.72017 * 27 26 3 51 51 H 1.09006 * 109.47522 * 149.71812 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2914 2.1518 -1.1357 5 6 2.7079 3.3288 -0.7575 6 6 2.7177 3.3559 0.6551 7 6 3.1200 4.4907 1.5060 8 8 2.7547 4.5414 2.6648 9 7 3.8925 5.4722 0.9994 10 6 4.2397 5.4702 -0.4238 11 6 4.3851 6.5408 1.8722 12 6 5.7356 6.1335 2.4646 13 8 6.7019 6.0251 1.4174 14 6 8.0053 5.6480 1.8661 15 6 8.9522 5.5624 0.6674 16 7 9.1153 6.8937 0.0779 17 6 8.2086 7.3416 -0.9821 18 6 10.1153 7.7193 0.5176 19 1 10.9797 7.3037 1.0141 20 6 10.0180 9.0907 0.3253 21 7 8.8796 9.6208 -0.0690 22 14 11.5026 10.1837 0.6265 23 1 12.6520 9.3492 1.0599 24 1 11.8545 10.8971 -0.6276 25 1 11.1818 11.1737 1.6858 26 6 2.2799 2.1208 1.0895 27 6 2.1299 1.6813 2.5231 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9949 4.1403 -1.4097 34 1 3.4569 5.9755 -0.9895 35 1 5.1861 5.9916 -0.5677 36 1 4.3345 4.4421 -0.7733 37 1 4.5035 7.4568 1.2934 38 1 3.6709 6.7099 2.6780 39 1 6.0600 6.8877 3.1817 40 1 5.6363 5.1721 2.9684 41 1 8.3765 6.3924 2.5704 42 1 7.9534 4.6766 2.3576 43 1 9.9221 5.1895 0.9964 44 1 8.5356 4.8840 -0.0771 45 1 7.3883 7.9092 -0.5427 46 1 8.7535 7.9736 -1.6832 47 1 7.8093 6.4748 -1.5089 48 1 8.8118 10.5790 -0.2037 49 1 1.1253 1.9191 2.8728 50 1 2.2936 0.6059 2.5924 51 1 2.8623 2.2008 3.1411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692108890.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:54 Heat of formation + Delta-G solvation = 36.605491 kcal Electronic energy + Delta-G solvation = -30400.899021 eV Core-core repulsion = 26339.128326 eV Total energy + Delta-G solvation = -4061.770696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71624 -39.32973 -37.37933 -35.63567 -35.13751 -34.67334 -32.36706 -31.57001 -30.68746 -29.28493 -27.96126 -27.55036 -26.32479 -25.68591 -24.44529 -23.08594 -22.82380 -21.69058 -20.31990 -20.23409 -18.88894 -17.36518 -16.73542 -16.35407 -16.11997 -15.94827 -15.63778 -15.18502 -15.02485 -14.80188 -14.58159 -14.28777 -13.79081 -13.56826 -13.40161 -13.34496 -13.24404 -12.95097 -12.82150 -12.67159 -12.61494 -12.30613 -12.19861 -12.00231 -11.79387 -11.62490 -11.31991 -11.22631 -10.99468 -10.89821 -10.79484 -10.68662 -10.44888 -10.02059 -9.85911 -9.77992 -9.68423 -9.56744 -8.85257 -8.77513 -8.46492 -8.38523 -6.64218 -5.63081 -3.07808 1.39524 2.09572 2.11009 3.14941 3.41173 3.46691 3.48372 3.50094 4.12543 4.32284 4.36484 4.49739 4.57056 4.61957 4.68757 4.82339 4.93804 5.09767 5.20008 5.27678 5.33730 5.36813 5.41762 5.49209 5.51605 5.55446 5.62362 5.66645 5.68241 5.78372 5.83763 5.90012 6.05289 6.10419 6.19924 6.25421 6.28291 6.33025 6.62097 6.65949 6.71420 6.83826 6.96980 7.40481 7.54668 7.58299 7.85518 7.94464 8.00067 8.36609 8.48906 9.34021 9.97816 10.47911 11.41262 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.002347 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.082192 B =11928.999038 C =12189.089904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.124 3.876 3 N -0.361 5.361 4 N -0.301 5.301 5 C 0.070 3.930 6 C -0.290 4.290 7 C 0.593 3.407 8 O -0.556 6.556 9 N -0.597 5.597 10 C 0.063 3.937 11 C 0.122 3.878 12 C 0.049 3.951 13 O -0.366 6.366 14 C 0.045 3.955 15 C 0.154 3.846 16 N -0.597 5.597 17 C 0.176 3.824 18 C -0.252 4.252 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.292 1.292 26 C 0.152 3.848 27 C -0.093 4.093 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.205 0.795 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.039 0.961 41 H 0.046 0.954 42 H 0.021 0.979 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.032 0.968 46 H 0.037 0.963 47 H -0.007 1.007 48 H 0.249 0.751 49 H 0.087 0.913 50 H 0.068 0.932 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.043 -18.343 1.417 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.003 3.997 3 N -0.142 5.142 4 N -0.120 5.120 5 C -0.116 4.116 6 C -0.305 4.305 7 C 0.383 3.617 8 O -0.436 6.436 9 N -0.329 5.329 10 C -0.080 4.080 11 C 0.000 4.000 12 C -0.029 4.029 13 O -0.284 6.284 14 C -0.035 4.035 15 C 0.026 3.974 16 N -0.319 5.319 17 C 0.031 3.969 18 C -0.382 4.382 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.549 5.549 22 Si 0.732 3.268 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.219 1.219 26 C 0.020 3.980 27 C -0.151 4.151 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.221 0.779 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.011 0.989 48 H 0.060 0.940 49 H 0.105 0.895 50 H 0.087 0.913 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.611 -18.993 0.729 25.912 hybrid contribution 1.064 1.251 1.094 1.973 sum -16.547 -17.742 1.823 24.329 Atomic orbital electron populations 1.22184 0.93954 1.03241 1.03454 1.21761 0.95488 0.77710 1.04748 1.48554 1.49985 1.12220 1.03422 1.77205 1.22581 1.04686 1.07494 1.24830 0.96578 0.95909 0.94306 1.19978 1.20329 0.96501 0.93694 1.17255 0.77434 0.81052 0.85977 1.90712 1.56820 1.78098 1.17988 1.47459 1.49879 1.25397 1.10139 1.22418 1.02169 1.03115 0.80278 1.21540 0.93568 0.89889 0.94999 1.22769 0.89541 0.99435 0.91190 1.87931 1.18723 1.90213 1.31581 1.23432 0.83906 0.96156 0.99980 1.20876 0.95052 0.88902 0.92613 1.43891 1.35283 1.12708 1.40048 1.20690 0.93360 0.93548 0.89300 1.19250 0.96629 0.87723 1.34624 0.91574 1.25004 0.96557 0.96777 1.01441 1.70101 1.22870 1.10446 1.51516 0.86234 0.82461 0.80760 0.77374 1.20466 1.21729 1.21881 1.21432 0.94647 0.90889 0.91032 1.20576 1.04878 1.01190 0.88451 0.91875 0.91445 0.90284 0.88308 0.88712 0.77917 0.92779 0.88887 0.90261 0.89237 0.88849 0.92991 0.94274 0.93549 0.96090 0.92573 0.93905 0.94990 0.94431 0.98892 0.94019 0.89458 0.91296 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 2 C 0.12 0.77 6.93 -4.04 -0.03 0.74 16 3 N -0.36 -3.76 3.58 -56.60 -0.20 -3.97 16 4 N -0.30 -3.70 12.50 30.86 0.39 -3.32 16 5 C 0.07 0.84 9.73 -16.98 -0.17 0.68 16 6 C -0.29 -3.84 5.84 -105.06 -0.61 -4.45 16 7 C 0.59 8.90 7.59 -12.51 -0.09 8.81 16 8 O -0.56 -9.46 14.90 5.27 0.08 -9.38 16 9 N -0.60 -8.56 2.84 -182.84 -0.52 -9.08 16 10 C 0.06 0.78 8.66 59.85 0.52 1.30 16 11 C 0.12 1.83 5.84 -4.04 -0.02 1.80 16 12 C 0.05 0.82 6.28 37.16 0.23 1.05 16 13 O -0.37 -7.12 8.78 -35.23 -0.31 -7.43 16 14 C 0.04 0.88 6.28 37.16 0.23 1.11 16 15 C 0.15 3.22 6.11 -4.04 -0.02 3.20 16 16 N -0.60 -15.20 2.89 -181.12 -0.52 -15.72 16 17 C 0.18 4.40 8.61 59.85 0.52 4.91 16 18 C -0.25 -6.99 9.68 -15.06 -0.15 -7.13 16 19 H 0.07 1.79 7.84 -52.49 -0.41 1.38 16 20 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16 21 N -0.90 -26.48 10.57 55.49 0.59 -25.89 16 22 Si 0.90 22.04 29.57 -169.99 -5.03 17.02 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 C 0.15 1.73 7.00 -81.61 -0.57 1.16 16 27 C -0.09 -0.82 9.44 36.00 0.34 -0.48 16 28 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.39 7.01 -51.93 -0.36 0.02 16 33 H 0.20 1.98 5.03 -52.49 -0.26 1.71 16 34 H 0.05 0.55 7.71 -51.93 -0.40 0.15 16 35 H 0.09 1.36 7.18 -51.93 -0.37 0.98 16 36 H 0.08 0.91 4.66 -51.92 -0.24 0.67 16 37 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 38 H 0.09 1.34 7.36 -51.93 -0.38 0.96 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 44 H 0.04 0.84 7.86 -51.93 -0.41 0.43 16 45 H 0.03 0.86 7.42 -51.93 -0.39 0.48 16 46 H 0.04 1.01 7.17 -51.93 -0.37 0.64 16 47 H -0.01 -0.17 7.84 -51.93 -0.41 -0.57 16 48 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.07 0.41 7.05 -51.93 -0.37 0.04 16 51 H 0.10 1.05 7.08 -51.93 -0.37 0.68 16 LS Contribution 409.21 15.07 6.17 6.17 Total: -1.00 -34.54 409.21 -7.42 -41.96 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -8.52 Total: -2.47 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 0.46 Total: 12.12 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -0.27 Total: -57.99 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.23 Total: -16.80 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.54 -7.42 -41.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692108890.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.567 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds