Wall clock time and date at job start Tue Mar 31 2020 21:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.47055 * 2 1 4 4 N 1.39930 * 125.74724 * 269.97057 * 3 2 1 5 5 C 1.30454 * 108.89513 * 180.02562 * 4 3 2 6 6 C 1.41291 * 108.02056 * 0.02562 * 5 4 3 7 7 C 1.47431 * 126.41731 * 179.97438 * 6 5 4 8 8 O 1.21603 * 120.00272 * 159.92813 * 7 6 5 9 9 N 1.34782 * 119.99745 * 339.93194 * 7 6 5 10 10 C 1.46501 * 120.00016 * 5.12031 * 9 7 6 11 11 C 1.46502 * 119.99945 * 185.12060 * 9 7 6 12 12 C 1.52998 * 109.46882 * 89.99764 * 11 9 7 13 13 O 1.42898 * 109.46983 * 65.00249 * 12 11 9 14 14 C 1.42908 * 113.99611 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46842 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.46886 * 64.99865 * 15 14 13 17 17 C 1.46500 * 120.00351 * 269.99791 * 16 15 14 18 18 C 1.36936 * 119.99755 * 90.00403 * 16 15 14 19 19 H 1.07995 * 120.00281 * 21.95228 * 18 16 15 20 20 C 1.38821 * 119.99709 * 201.95514 * 18 16 15 21 21 N 1.31621 * 120.00083 * 11.49266 * 20 18 16 22 22 Si 1.86795 * 119.99813 * 191.48822 * 20 18 16 23 23 H 1.48504 * 109.47535 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46997 * 120.00187 * 22 20 18 25 25 H 1.48499 * 109.47437 * 239.99955 * 22 20 18 26 26 C 1.34255 * 125.75287 * 90.00489 * 3 2 1 27 27 C 1.50688 * 126.29558 * 0.23291 * 26 3 2 28 28 H 1.09010 * 109.46941 * 300.00161 * 1 2 3 29 29 H 1.09003 * 109.47121 * 60.00052 * 1 2 3 30 30 H 1.08993 * 109.46952 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47118 * 239.99757 * 2 1 3 32 32 H 1.09003 * 109.47121 * 119.99948 * 2 1 3 33 33 H 1.07994 * 125.99249 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47528 * 86.78534 * 10 9 7 35 35 H 1.09003 * 109.47191 * 206.79001 * 10 9 7 36 36 H 1.09008 * 109.46953 * 326.78482 * 10 9 7 37 37 H 1.08997 * 109.46495 * 209.99767 * 11 9 7 38 38 H 1.09003 * 109.46842 * 329.99621 * 11 9 7 39 39 H 1.09001 * 109.46644 * 185.00001 * 12 11 9 40 40 H 1.08994 * 109.47203 * 304.99818 * 12 11 9 41 41 H 1.08994 * 109.46820 * 299.99451 * 14 13 12 42 42 H 1.08994 * 109.47340 * 60.00349 * 14 13 12 43 43 H 1.08997 * 109.47284 * 184.99901 * 15 14 13 44 44 H 1.08996 * 109.46931 * 305.00178 * 15 14 13 45 45 H 1.09000 * 109.47296 * 94.25694 * 17 16 15 46 46 H 1.08996 * 109.47197 * 214.26850 * 17 16 15 47 47 H 1.09004 * 109.46870 * 334.26563 * 17 16 15 48 48 H 0.96996 * 119.99673 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.47523 * 269.72077 * 27 26 3 50 50 H 1.09000 * 109.47432 * 29.72017 * 27 26 3 51 51 H 1.09006 * 109.47522 * 149.71812 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2914 2.1518 -1.1357 5 6 2.7079 3.3288 -0.7575 6 6 2.7177 3.3559 0.6551 7 6 3.1200 4.4907 1.5060 8 8 2.7547 4.5414 2.6648 9 7 3.8925 5.4722 0.9994 10 6 4.2397 5.4702 -0.4238 11 6 4.3851 6.5408 1.8722 12 6 5.7356 6.1335 2.4646 13 8 6.7019 6.0251 1.4174 14 6 8.0053 5.6480 1.8661 15 6 8.9522 5.5624 0.6674 16 7 9.1153 6.8937 0.0779 17 6 8.2086 7.3416 -0.9821 18 6 10.1153 7.7193 0.5176 19 1 10.9797 7.3037 1.0141 20 6 10.0180 9.0907 0.3253 21 7 8.8796 9.6208 -0.0690 22 14 11.5026 10.1837 0.6265 23 1 12.6520 9.3492 1.0599 24 1 11.8545 10.8971 -0.6276 25 1 11.1818 11.1737 1.6858 26 6 2.2799 2.1208 1.0895 27 6 2.1299 1.6813 2.5231 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9949 4.1403 -1.4097 34 1 3.4569 5.9755 -0.9895 35 1 5.1861 5.9916 -0.5677 36 1 4.3345 4.4421 -0.7733 37 1 4.5035 7.4568 1.2934 38 1 3.6709 6.7099 2.6780 39 1 6.0600 6.8877 3.1817 40 1 5.6363 5.1721 2.9684 41 1 8.3765 6.3924 2.5704 42 1 7.9534 4.6766 2.3576 43 1 9.9221 5.1895 0.9964 44 1 8.5356 4.8840 -0.0771 45 1 7.3883 7.9092 -0.5427 46 1 8.7535 7.9736 -1.6832 47 1 7.8093 6.4748 -1.5089 48 1 8.8118 10.5790 -0.2037 49 1 1.1253 1.9191 2.8728 50 1 2.2936 0.6059 2.5924 51 1 2.8623 2.2008 3.1411 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692108890.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:53 Heat of formation + Delta-G solvation = 14.926700 kcal Electronic energy + Delta-G solvation = -30401.839084 eV Core-core repulsion = 26339.128326 eV Total energy + Delta-G solvation = -4062.710759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.58243 -40.45899 -38.89706 -37.20100 -36.45892 -35.52441 -33.45326 -33.15568 -31.88053 -30.36613 -29.48545 -28.43770 -27.77816 -27.39620 -25.18989 -24.77829 -24.01071 -22.68025 -22.09600 -21.15241 -19.86928 -18.75927 -18.28324 -17.50455 -17.35987 -16.96701 -16.83151 -16.76857 -16.23548 -16.12335 -15.58737 -15.31123 -15.20860 -15.09636 -14.82797 -14.31709 -14.28134 -14.03253 -13.92357 -13.66976 -13.53526 -13.35891 -13.26447 -13.09440 -12.95804 -12.86114 -12.71373 -12.62497 -12.53245 -12.36621 -12.26595 -12.15284 -11.95538 -11.83586 -11.74845 -11.66640 -10.84605 -10.59212 -10.38430 -10.35074 -9.76633 -9.46245 -8.70338 -7.75249 -5.21941 0.51523 1.15826 1.39530 1.47454 1.48864 1.58658 2.06546 2.39843 2.54573 2.94082 3.37479 3.47060 3.58331 3.79031 3.87234 3.94848 4.06073 4.14176 4.15831 4.22753 4.33571 4.34565 4.40667 4.46135 4.54561 4.56781 4.63246 4.64127 4.67568 4.70091 4.74533 4.82111 4.87213 4.94078 4.97338 5.01716 5.05364 5.11200 5.19269 5.20338 5.39357 5.45156 5.57838 5.70059 5.90363 5.93108 6.38451 6.41948 6.51958 6.56804 7.22962 7.23763 7.95861 8.40505 9.27764 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.002347 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.082192 B =11928.999038 C =12189.089904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 N -0.356 5.356 4 N -0.322 5.322 5 C 0.070 3.930 6 C -0.321 4.321 7 C 0.591 3.409 8 O -0.584 6.584 9 N -0.600 5.600 10 C 0.067 3.933 11 C 0.128 3.872 12 C 0.052 3.948 13 O -0.380 6.380 14 C 0.053 3.947 15 C 0.150 3.850 16 N -0.613 5.613 17 C 0.195 3.805 18 C -0.259 4.259 19 H 0.071 0.929 20 C -0.055 4.055 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.267 1.267 24 H -0.293 1.293 25 H -0.295 1.295 26 C 0.154 3.846 27 C -0.090 4.090 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.218 0.782 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.041 0.959 41 H 0.021 0.979 42 H 0.051 0.949 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.006 0.994 46 H 0.009 0.991 47 H 0.022 0.978 48 H 0.245 0.755 49 H 0.095 0.905 50 H 0.102 0.898 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.302 -20.639 1.598 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.136 5.136 4 N -0.141 5.141 5 C -0.116 4.116 6 C -0.336 4.336 7 C 0.382 3.618 8 O -0.466 6.466 9 N -0.331 5.331 10 C -0.076 4.076 11 C 0.005 3.995 12 C -0.026 4.026 13 O -0.299 6.299 14 C -0.026 4.026 15 C 0.024 3.976 16 N -0.336 5.336 17 C 0.050 3.950 18 C -0.389 4.389 19 H 0.088 0.912 20 C -0.250 4.250 21 N -0.581 5.581 22 Si 0.794 3.206 23 H -0.191 1.191 24 H -0.220 1.220 25 H -0.223 1.223 26 C 0.020 3.980 27 C -0.148 4.148 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.234 0.766 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.025 0.975 46 H 0.028 0.972 47 H 0.040 0.960 48 H 0.054 0.946 49 H 0.114 0.886 50 H 0.120 0.880 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.866 -21.342 0.894 27.848 hybrid contribution 1.083 1.817 1.044 2.358 sum -16.783 -19.525 1.938 25.820 Atomic orbital electron populations 1.22151 0.93091 1.04648 1.02326 1.22209 0.96192 0.75798 1.06503 1.48908 1.48900 1.13200 1.02563 1.77153 1.23196 1.05048 1.08713 1.25038 0.96247 0.96294 0.94040 1.20005 1.22578 0.96854 0.94144 1.17526 0.77056 0.81335 0.85853 1.90684 1.57994 1.78726 1.19162 1.47527 1.49692 1.25109 1.10738 1.22468 1.01788 1.03740 0.79563 1.21428 0.92780 0.90016 0.95288 1.22824 0.89647 0.99399 0.90688 1.87914 1.18883 1.90376 1.32744 1.23209 0.83832 0.96833 0.98768 1.21056 0.96246 0.86940 0.93391 1.44114 1.34973 1.13914 1.40565 1.20373 0.92059 0.93845 0.88755 1.19578 0.97318 0.88264 1.33772 0.91156 1.25750 0.99040 0.98167 1.02058 1.70268 1.24609 1.10246 1.52947 0.85235 0.79801 0.78842 0.76749 1.19107 1.21973 1.22254 1.21805 0.93371 0.90517 0.92271 1.20626 1.04679 1.03016 0.86436 0.92222 0.93291 0.87599 0.87600 0.85953 0.76551 0.90500 0.91096 0.89224 0.89602 0.88361 0.93421 0.94061 0.96083 0.93102 0.91335 0.92209 0.97544 0.97247 0.96004 0.94593 0.88629 0.87979 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 10.24 71.98 0.74 -0.57 16 2 C 0.11 1.09 6.93 86.38 0.60 1.69 16 3 N -0.36 -6.75 3.58 -332.99 -1.19 -7.95 16 4 N -0.32 -7.53 12.50 -56.27 -0.70 -8.24 16 5 C 0.07 1.61 9.73 85.65 0.83 2.45 16 6 C -0.32 -8.26 5.84 -20.15 -0.12 -8.37 16 7 C 0.59 17.61 7.59 86.66 0.66 18.26 16 8 O -0.58 -19.89 14.90 -4.04 -0.06 -19.95 16 9 N -0.60 -17.07 2.84 -850.64 -2.41 -19.48 16 10 C 0.07 1.61 8.66 127.77 1.11 2.72 16 11 C 0.13 3.84 5.84 86.38 0.50 4.35 16 12 C 0.05 1.75 6.28 71.98 0.45 2.20 16 13 O -0.38 -14.69 8.78 -148.98 -1.31 -15.99 16 14 C 0.05 2.02 6.28 71.98 0.45 2.47 16 15 C 0.15 6.08 6.11 86.38 0.53 6.61 16 16 N -0.61 -31.01 2.89 -726.93 -2.10 -33.11 16 17 C 0.19 9.82 8.61 127.77 1.10 10.92 16 18 C -0.26 -14.28 9.68 84.04 0.81 -13.47 16 19 H 0.07 3.75 7.84 -2.91 -0.02 3.72 16 20 C -0.06 -3.12 5.13 84.86 0.44 -2.69 16 21 N -0.93 -55.76 10.57 21.65 0.23 -55.54 16 22 Si 0.96 45.60 29.57 68.60 2.03 47.63 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 26 C 0.15 3.29 7.00 42.14 0.29 3.59 16 27 C -0.09 -1.41 9.44 71.23 0.67 -0.74 16 28 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.12 0.53 7.01 -2.39 -0.02 0.51 16 33 H 0.22 3.99 5.03 -2.91 -0.01 3.98 16 34 H 0.08 1.49 7.71 -2.39 -0.02 1.47 16 35 H 0.07 2.06 7.18 -2.39 -0.02 2.04 16 36 H 0.09 1.98 4.66 -2.38 -0.01 1.97 16 37 H 0.09 2.63 8.07 -2.39 -0.02 2.61 16 38 H 0.10 2.85 7.36 -2.39 -0.02 2.83 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 41 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 2.59 8.03 -2.39 -0.02 2.57 16 44 H 0.06 2.22 7.86 -2.39 -0.02 2.20 16 45 H 0.01 0.35 7.42 -2.39 -0.02 0.33 16 46 H 0.01 0.49 7.17 -2.39 -0.02 0.47 16 47 H 0.02 0.94 7.84 -2.38 -0.02 0.93 16 48 H 0.24 14.24 8.31 -92.71 -0.77 13.46 16 49 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 50 H 0.10 0.88 7.05 -2.39 -0.02 0.86 16 51 H 0.08 1.61 7.08 -2.38 -0.02 1.59 16 Total: -1.00 -74.74 409.21 4.46 -70.28 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.91 Total: 12.94 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 9.07 Total: 29.41 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -6.18 Total: -124.32 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -1.37 Total: -35.95 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.74 4.46 -70.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692108890.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.207 kcal (2) G-P(sol) polarization free energy of solvation -74.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds