Wall clock time and date at job start Tue Mar 31 2020 22:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21286 * 119.99625 * 2 1 4 4 N 1.34776 * 120.00093 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00137 * 0.02562 * 4 2 1 6 6 C 1.46494 * 119.99703 * 180.02562 * 4 2 1 7 7 C 1.50697 * 109.47310 * 90.00580 * 6 4 2 8 8 O 1.21284 * 120.00156 * 359.97438 * 7 6 4 9 9 N 1.34781 * 120.00488 * 180.02562 * 7 6 4 10 10 C 1.47026 * 125.64311 * 359.68593 * 9 7 6 11 11 C 1.54311 * 107.27203 * 180.97315 * 10 9 7 12 12 C 1.55159 * 102.86790 * 22.52513 * 11 10 9 13 13 H 1.08992 * 111.00211 * 82.37520 * 12 11 10 14 14 N 1.46896 * 111.03724 * 206.21580 * 12 11 10 15 15 C 1.46899 * 111.00397 * 296.28016 * 14 12 11 16 16 C 1.53234 * 109.34360 * 172.74719 * 15 14 12 17 17 N 1.47088 * 108.51879 * 53.82644 * 16 15 14 18 18 C 1.36940 * 120.87464 * 128.83612 * 17 16 15 19 19 H 1.08006 * 119.99775 * 208.56196 * 18 17 16 20 20 C 1.38809 * 120.00272 * 28.57516 * 18 17 16 21 21 N 1.31617 * 120.00431 * 15.03004 * 20 18 17 22 22 Si 1.86798 * 119.99852 * 195.03864 * 20 18 17 23 23 H 1.48498 * 109.47557 * 59.99645 * 22 20 18 24 24 H 1.48500 * 109.47040 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47180 * 299.99597 * 22 20 18 26 26 C 1.47075 * 118.23999 * 308.81703 * 17 16 15 27 27 C 1.46902 * 110.99952 * 171.97600 * 14 12 11 28 28 C 1.47418 * 125.65249 * 179.97438 * 9 7 6 29 29 H 1.08992 * 109.47052 * 239.99620 * 1 2 3 30 30 H 1.08993 * 109.47003 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46919 * 120.00100 * 1 2 3 32 32 H 1.09000 * 109.46601 * 270.00154 * 5 4 2 33 33 H 1.09008 * 109.47072 * 29.99605 * 5 4 2 34 34 H 1.08993 * 109.47041 * 149.99793 * 5 4 2 35 35 H 1.09004 * 109.47005 * 209.99922 * 6 4 2 36 36 H 1.09002 * 109.47651 * 329.99867 * 6 4 2 37 37 H 1.09005 * 109.88303 * 300.51577 * 10 9 7 38 38 H 1.08995 * 109.88422 * 61.68266 * 10 9 7 39 39 H 1.09003 * 110.92128 * 264.11094 * 11 10 9 40 40 H 1.09001 * 110.74372 * 140.85569 * 11 10 9 41 41 H 1.09002 * 109.48676 * 292.71005 * 15 14 12 42 42 H 1.08998 * 109.49173 * 52.78588 * 15 14 12 43 43 H 1.08999 * 109.63193 * 294.12329 * 16 15 14 44 44 H 1.08990 * 109.79115 * 173.63024 * 16 15 14 45 45 H 0.96999 * 120.00445 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.62457 * 291.47473 * 26 17 16 47 47 H 1.08997 * 109.79064 * 170.99126 * 26 17 16 48 48 H 1.08995 * 109.49176 * 307.21547 * 27 14 12 49 49 H 1.08997 * 109.49349 * 67.29324 * 27 14 12 50 50 H 1.08995 * 110.37083 * 274.67290 * 28 9 7 51 51 H 1.09001 * 110.36509 * 36.99367 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.4485 -2.4359 0.0005 6 6 3.6459 -1.1671 0.0011 7 6 4.1477 -1.1669 1.4220 8 8 3.3593 -1.1663 2.3436 9 7 5.4727 -1.1662 1.6689 10 6 6.5339 -1.1722 0.6512 11 6 7.8843 -1.1940 1.3976 12 6 7.5038 -1.7784 2.7836 13 1 7.4547 -2.8666 2.7485 14 7 8.4422 -1.3295 3.8208 15 6 9.7972 -1.8322 3.5580 16 6 10.7755 -1.1983 4.5527 17 7 10.2766 -1.4377 5.9156 18 6 11.0903 -1.9740 6.8776 19 1 10.6652 -2.5599 7.6792 20 6 12.4614 -1.7644 6.8228 21 7 12.9531 -0.8264 6.0413 22 14 13.6087 -2.8139 7.8580 23 1 13.4487 -4.2414 7.4816 24 1 15.0132 -2.3942 7.6200 25 1 13.2766 -2.6406 9.2950 26 6 8.8810 -1.0854 6.2177 27 6 7.9774 -1.7237 5.1574 28 6 6.0980 -1.1654 3.0039 29 1 -0.3633 -0.5139 0.8899 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.2665 -2.7503 1.0282 33 1 0.4962 -2.3057 -0.5137 34 1 2.0378 -3.1956 -0.5129 35 1 4.0095 -2.0572 -0.5124 36 1 4.0095 -0.2772 -0.5128 37 1 6.4407 -2.0587 0.0237 38 1 6.4653 -0.2732 0.0389 39 1 8.2879 -0.1867 1.5014 40 1 8.5967 -1.8427 0.8879 41 1 9.8119 -2.9160 3.6739 42 1 10.0915 -1.5707 2.5416 43 1 10.8402 -0.1258 4.3697 44 1 11.7612 -1.6493 4.4391 45 1 13.9113 -0.6802 6.0027 46 1 8.7637 -0.0020 6.1946 47 1 8.6106 -1.4620 7.2041 48 1 6.9519 -1.3835 5.3009 49 1 8.0174 -2.8089 5.2510 50 1 6.1832 -0.1469 3.3824 51 1 5.5201 -1.7803 3.6939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700167037.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:41 Heat of formation + Delta-G solvation = -19.665384 kcal Electronic energy + Delta-G solvation = -30152.429194 eV Core-core repulsion = 26088.218410 eV Total energy + Delta-G solvation = -4064.210784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.67241 -39.69441 -38.37460 -36.81526 -35.69350 -34.18748 -31.86944 -31.11379 -30.36469 -30.12340 -28.89714 -27.97740 -26.55605 -25.61429 -23.73461 -22.83509 -22.17131 -20.53583 -20.11224 -19.16482 -19.09284 -17.62194 -17.40817 -17.03421 -16.60013 -16.17347 -15.83591 -15.16341 -14.94985 -14.58038 -14.26548 -14.06684 -13.99154 -13.64246 -13.53322 -13.45015 -13.36857 -13.20324 -13.08008 -12.96123 -12.73895 -12.58033 -12.48895 -12.37939 -12.05892 -11.86157 -11.31937 -11.21033 -11.03868 -10.89805 -10.73820 -10.46809 -10.30716 -10.29666 -10.19316 -10.05219 -9.74648 -9.61125 -9.04768 -8.78214 -8.51219 -7.90839 -6.64145 -5.78337 -3.21754 2.18735 2.45147 2.51510 2.95941 3.37947 3.43461 3.44499 4.18252 4.21723 4.23691 4.49621 4.56850 4.59043 4.68470 4.69588 4.88356 4.90505 4.93297 5.01444 5.12764 5.20562 5.27392 5.30390 5.39780 5.40065 5.45719 5.48643 5.70931 5.80802 5.82561 5.86596 5.89521 5.95461 6.07042 6.13996 6.17108 6.25054 6.32670 6.52254 6.68415 6.93393 6.93723 7.21645 7.33382 7.55272 7.62138 7.68291 7.80201 7.80585 7.99636 8.44591 9.21542 9.84041 10.43585 11.30481 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.033528 B = 0.002006 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.912352 B =13954.700239 C =14177.962477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.517 3.483 3 O -0.541 6.541 4 N -0.604 5.604 5 C 0.079 3.921 6 C 0.101 3.899 7 C 0.513 3.487 8 O -0.534 6.534 9 N -0.617 5.617 10 C 0.100 3.900 11 C -0.123 4.123 12 C 0.069 3.931 13 H 0.050 0.950 14 N -0.521 5.521 15 C 0.037 3.963 16 C 0.179 3.821 17 N -0.595 5.595 18 C -0.253 4.253 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.904 5.904 22 Si 0.904 3.096 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.149 3.851 27 C 0.042 3.958 28 C 0.117 3.883 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.254 0.746 46 H 0.026 0.974 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.080 0.920 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.069 -4.494 -17.970 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.306 3.694 3 O -0.418 6.418 4 N -0.337 5.337 5 C -0.064 4.064 6 C -0.025 4.025 7 C 0.300 3.700 8 O -0.410 6.410 9 N -0.352 5.352 10 C -0.023 4.023 11 C -0.161 4.161 12 C -0.041 4.041 13 H 0.068 0.932 14 N -0.246 5.246 15 C -0.092 4.092 16 C 0.053 3.947 17 N -0.318 5.318 18 C -0.382 4.382 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.734 3.266 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.022 3.978 27 C -0.088 4.088 28 C -0.006 4.006 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.047 0.953 50 H 0.098 0.902 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.072 -3.369 -17.510 27.604 hybrid contribution 0.739 -1.575 0.570 1.831 sum -20.333 -4.944 -16.940 26.923 Atomic orbital electron populations 1.21923 0.91294 1.05561 1.04175 1.20855 0.90848 0.82800 0.74916 1.90734 1.70774 1.31054 1.49221 1.47461 1.05171 1.07133 1.73962 1.21877 0.97077 0.84751 1.02662 1.21269 0.81494 1.05539 0.94245 1.20805 0.80704 0.76422 0.92104 1.90702 1.54326 1.49700 1.46299 1.48470 1.04856 1.73231 1.08681 1.22120 0.87236 1.01628 0.91347 1.22690 0.95226 1.03542 0.94654 1.22744 0.91920 0.96770 0.92630 0.93233 1.62015 1.01929 1.59564 1.01101 1.22911 0.88732 0.97232 1.00340 1.20845 0.94894 0.97356 0.81606 1.44091 1.07269 1.73151 1.07325 1.19137 0.88321 1.24782 1.05995 0.91811 1.25080 0.97882 0.97369 0.99298 1.69997 1.12050 1.31016 1.41763 0.86354 0.79989 0.80146 0.80153 1.21122 1.21607 1.20879 1.20969 0.85564 0.96697 0.94541 1.22672 0.98576 0.97917 0.89594 1.22237 0.92176 1.02143 0.84023 0.89129 0.88947 0.89352 0.91909 0.90484 0.90946 0.87529 0.86844 0.91378 0.90965 0.89010 0.90022 0.95688 0.91901 0.95494 0.89450 0.93556 0.95605 0.92589 0.91878 0.95343 0.90152 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 8.87 36.01 0.32 -0.73 16 2 C 0.52 5.56 7.78 -10.98 -0.09 5.47 16 3 O -0.54 -8.26 16.67 5.55 0.09 -8.17 16 4 N -0.60 -5.41 2.36 -182.95 -0.43 -5.84 16 5 C 0.08 0.41 10.29 59.85 0.62 1.02 16 6 C 0.10 0.92 5.12 -5.20 -0.03 0.89 16 7 C 0.51 6.62 7.92 -10.99 -0.09 6.54 16 8 O -0.53 -8.99 16.69 5.55 0.09 -8.89 16 9 N -0.62 -7.42 3.33 -170.52 -0.57 -7.99 16 10 C 0.10 0.89 6.48 -3.07 -0.02 0.87 16 11 C -0.12 -1.31 5.43 -24.90 -0.14 -1.45 16 12 C 0.07 0.93 2.71 -65.55 -0.18 0.76 16 13 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 14 N -0.52 -8.86 4.53 -223.78 -1.01 -9.87 16 15 C 0.04 0.68 5.49 -3.70 -0.02 0.66 16 16 C 0.18 4.24 5.40 -3.60 -0.02 4.22 16 17 N -0.59 -15.03 3.03 -172.02 -0.52 -15.55 16 18 C -0.25 -6.95 9.62 -15.06 -0.14 -7.10 16 19 H 0.06 1.72 7.87 -52.48 -0.41 1.31 16 20 C 0.00 0.06 4.97 -17.43 -0.09 -0.02 16 21 N -0.90 -26.13 11.17 55.49 0.62 -25.51 16 22 Si 0.90 21.65 29.58 -169.99 -5.03 16.62 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.15 3.19 6.69 -3.61 -0.02 3.17 16 27 C 0.04 0.75 5.46 -3.70 -0.02 0.73 16 28 C 0.12 1.61 5.23 -2.52 -0.01 1.59 16 29 H 0.09 0.47 8.11 -51.93 -0.42 0.05 16 30 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 31 H 0.09 0.29 7.40 -51.93 -0.38 -0.09 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.21 6.44 -51.92 -0.33 -0.13 16 34 H 0.07 0.25 7.89 -51.93 -0.41 -0.16 16 35 H 0.11 0.58 7.89 -51.93 -0.41 0.17 16 36 H 0.11 1.06 7.42 -51.93 -0.39 0.67 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 0.77 7.94 -51.93 -0.41 0.36 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 1.02 6.93 -51.93 -0.36 0.66 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 2.29 6.20 -51.93 -0.32 1.97 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 48 H 0.06 1.01 6.73 -51.93 -0.35 0.66 16 49 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 51 H 0.07 1.09 7.74 -51.93 -0.40 0.68 16 LS Contribution 400.52 15.07 6.04 6.04 Total: -1.00 -36.04 400.52 -9.45 -45.49 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -8.80 Total: -2.94 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 0.07 Total: 16.61 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -1.91 Total: -64.76 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.19 Total: -17.06 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.04 -9.45 -45.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700167037.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.826 kcal (2) G-P(sol) polarization free energy of solvation -36.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds