Wall clock time and date at job start Tue Mar 31 2020 22:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21286 * 119.99625 * 2 1 4 4 N 1.34776 * 120.00093 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00137 * 0.02562 * 4 2 1 6 6 C 1.46494 * 119.99703 * 180.02562 * 4 2 1 7 7 C 1.50697 * 109.47310 * 90.00580 * 6 4 2 8 8 O 1.21284 * 120.00156 * 359.97438 * 7 6 4 9 9 N 1.34781 * 120.00488 * 180.02562 * 7 6 4 10 10 C 1.47026 * 125.64311 * 359.68593 * 9 7 6 11 11 C 1.54311 * 107.27203 * 180.97315 * 10 9 7 12 12 C 1.55159 * 102.86790 * 22.52513 * 11 10 9 13 13 H 1.08992 * 111.00211 * 82.37520 * 12 11 10 14 14 N 1.46896 * 111.03724 * 206.21580 * 12 11 10 15 15 C 1.46899 * 111.00397 * 296.28016 * 14 12 11 16 16 C 1.53234 * 109.34360 * 172.74719 * 15 14 12 17 17 N 1.47088 * 108.51879 * 53.82644 * 16 15 14 18 18 C 1.36940 * 120.87464 * 128.83612 * 17 16 15 19 19 H 1.08006 * 119.99775 * 208.56196 * 18 17 16 20 20 C 1.38809 * 120.00272 * 28.57516 * 18 17 16 21 21 N 1.31617 * 120.00431 * 15.03004 * 20 18 17 22 22 Si 1.86798 * 119.99852 * 195.03864 * 20 18 17 23 23 H 1.48498 * 109.47557 * 59.99645 * 22 20 18 24 24 H 1.48500 * 109.47040 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47180 * 299.99597 * 22 20 18 26 26 C 1.47075 * 118.23999 * 308.81703 * 17 16 15 27 27 C 1.46902 * 110.99952 * 171.97600 * 14 12 11 28 28 C 1.47418 * 125.65249 * 179.97438 * 9 7 6 29 29 H 1.08992 * 109.47052 * 239.99620 * 1 2 3 30 30 H 1.08993 * 109.47003 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46919 * 120.00100 * 1 2 3 32 32 H 1.09000 * 109.46601 * 270.00154 * 5 4 2 33 33 H 1.09008 * 109.47072 * 29.99605 * 5 4 2 34 34 H 1.08993 * 109.47041 * 149.99793 * 5 4 2 35 35 H 1.09004 * 109.47005 * 209.99922 * 6 4 2 36 36 H 1.09002 * 109.47651 * 329.99867 * 6 4 2 37 37 H 1.09005 * 109.88303 * 300.51577 * 10 9 7 38 38 H 1.08995 * 109.88422 * 61.68266 * 10 9 7 39 39 H 1.09003 * 110.92128 * 264.11094 * 11 10 9 40 40 H 1.09001 * 110.74372 * 140.85569 * 11 10 9 41 41 H 1.09002 * 109.48676 * 292.71005 * 15 14 12 42 42 H 1.08998 * 109.49173 * 52.78588 * 15 14 12 43 43 H 1.08999 * 109.63193 * 294.12329 * 16 15 14 44 44 H 1.08990 * 109.79115 * 173.63024 * 16 15 14 45 45 H 0.96999 * 120.00445 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.62457 * 291.47473 * 26 17 16 47 47 H 1.08997 * 109.79064 * 170.99126 * 26 17 16 48 48 H 1.08995 * 109.49176 * 307.21547 * 27 14 12 49 49 H 1.08997 * 109.49349 * 67.29324 * 27 14 12 50 50 H 1.08995 * 110.37083 * 274.67290 * 28 9 7 51 51 H 1.09001 * 110.36509 * 36.99367 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.4485 -2.4359 0.0005 6 6 3.6459 -1.1671 0.0011 7 6 4.1477 -1.1669 1.4220 8 8 3.3593 -1.1663 2.3436 9 7 5.4727 -1.1662 1.6689 10 6 6.5339 -1.1722 0.6512 11 6 7.8843 -1.1940 1.3976 12 6 7.5038 -1.7784 2.7836 13 1 7.4547 -2.8666 2.7485 14 7 8.4422 -1.3295 3.8208 15 6 9.7972 -1.8322 3.5580 16 6 10.7755 -1.1983 4.5527 17 7 10.2766 -1.4377 5.9156 18 6 11.0903 -1.9740 6.8776 19 1 10.6652 -2.5599 7.6792 20 6 12.4614 -1.7644 6.8228 21 7 12.9531 -0.8264 6.0413 22 14 13.6087 -2.8139 7.8580 23 1 13.4487 -4.2414 7.4816 24 1 15.0132 -2.3942 7.6200 25 1 13.2766 -2.6406 9.2950 26 6 8.8810 -1.0854 6.2177 27 6 7.9774 -1.7237 5.1574 28 6 6.0980 -1.1654 3.0039 29 1 -0.3633 -0.5139 0.8899 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 1.2665 -2.7503 1.0282 33 1 0.4962 -2.3057 -0.5137 34 1 2.0378 -3.1956 -0.5129 35 1 4.0095 -2.0572 -0.5124 36 1 4.0095 -0.2772 -0.5128 37 1 6.4407 -2.0587 0.0237 38 1 6.4653 -0.2732 0.0389 39 1 8.2879 -0.1867 1.5014 40 1 8.5967 -1.8427 0.8879 41 1 9.8119 -2.9160 3.6739 42 1 10.0915 -1.5707 2.5416 43 1 10.8402 -0.1258 4.3697 44 1 11.7612 -1.6493 4.4391 45 1 13.9113 -0.6802 6.0027 46 1 8.7637 -0.0020 6.1946 47 1 8.6106 -1.4620 7.2041 48 1 6.9519 -1.3835 5.3009 49 1 8.0174 -2.8089 5.2510 50 1 6.1832 -0.1469 3.3824 51 1 5.5201 -1.7803 3.6939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700167037.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:40 Heat of formation + Delta-G solvation = -45.776325 kcal Electronic energy + Delta-G solvation = -30153.561450 eV Core-core repulsion = 26088.218410 eV Total energy + Delta-G solvation = -4065.343039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.56096 -40.64232 -39.65528 -38.12200 -36.46821 -35.83715 -33.47327 -32.12021 -31.84322 -31.28277 -29.89907 -28.85573 -27.72479 -26.73877 -25.06975 -24.47749 -23.53664 -21.67189 -21.01616 -20.81268 -19.90769 -18.85111 -18.47603 -18.12349 -17.51798 -17.31194 -16.81424 -16.62028 -16.13786 -15.86690 -15.58795 -15.38604 -15.28187 -15.21571 -14.91403 -14.58976 -14.37513 -14.08924 -14.02846 -13.75026 -13.63701 -13.50318 -13.34884 -13.23971 -13.07253 -12.97158 -12.69173 -12.68821 -12.57837 -12.52926 -12.21076 -12.03765 -11.89775 -11.82410 -11.46954 -11.39851 -11.26035 -11.00691 -10.59267 -9.78883 -9.74623 -9.33162 -8.66858 -7.88292 -5.35586 1.39463 1.46505 1.48170 1.51354 1.55469 1.82183 2.16643 2.49949 2.94417 3.27301 3.29332 3.64657 3.66858 3.68573 3.73520 4.03130 4.13206 4.19245 4.28730 4.30258 4.31048 4.33323 4.36629 4.47367 4.53313 4.56185 4.57414 4.62599 4.67168 4.75317 4.76800 4.86089 4.87851 4.93062 4.99147 5.00838 5.08013 5.14332 5.17409 5.24469 5.34927 5.35683 5.60286 5.69553 6.11761 6.23045 6.29201 6.37478 6.43370 6.99890 7.11197 7.13210 7.82322 8.37600 9.18221 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.033528 B = 0.002006 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.912352 B =13954.700239 C =14177.962477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.502 3.498 3 O -0.600 6.600 4 N -0.604 5.604 5 C 0.073 3.927 6 C 0.103 3.897 7 C 0.505 3.495 8 O -0.584 6.584 9 N -0.617 5.617 10 C 0.101 3.899 11 C -0.119 4.119 12 C 0.073 3.927 13 H 0.057 0.943 14 N -0.530 5.530 15 C 0.056 3.944 16 C 0.185 3.815 17 N -0.614 5.614 18 C -0.267 4.267 19 H 0.064 0.936 20 C -0.049 4.049 21 N -0.934 5.934 22 Si 0.971 3.029 23 H -0.277 1.277 24 H -0.292 1.292 25 H -0.277 1.277 26 C 0.145 3.855 27 C 0.055 3.945 28 C 0.121 3.879 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.152 0.848 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.021 0.979 42 H 0.092 0.908 43 H -0.002 1.002 44 H 0.058 0.942 45 H 0.251 0.749 46 H 0.013 0.987 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.025 0.975 50 H 0.059 0.941 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.434 -6.658 -20.366 31.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.293 3.707 3 O -0.481 6.481 4 N -0.336 5.336 5 C -0.068 4.068 6 C -0.023 4.023 7 C 0.294 3.706 8 O -0.464 6.464 9 N -0.352 5.352 10 C -0.021 4.021 11 C -0.157 4.157 12 C -0.036 4.036 13 H 0.075 0.925 14 N -0.256 5.256 15 C -0.073 4.073 16 C 0.059 3.941 17 N -0.338 5.338 18 C -0.397 4.397 19 H 0.082 0.918 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.798 3.202 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.203 1.203 26 C 0.019 3.981 27 C -0.074 4.074 28 C -0.003 4.003 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.142 0.858 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.169 0.831 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.039 0.961 42 H 0.110 0.890 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.031 0.969 47 H 0.076 0.924 48 H 0.100 0.900 49 H 0.044 0.956 50 H 0.078 0.922 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.464 -5.578 -19.938 30.549 hybrid contribution 1.117 -0.869 1.352 1.957 sum -21.346 -6.447 -18.586 29.029 Atomic orbital electron populations 1.21950 0.88052 1.05951 1.06297 1.21728 0.92660 0.82489 0.73801 1.90698 1.72165 1.33126 1.52099 1.47693 1.05410 1.07996 1.72492 1.22142 0.98614 0.83535 1.02530 1.21427 0.81873 1.07443 0.91590 1.21620 0.80429 0.75221 0.93318 1.90674 1.55573 1.52036 1.48071 1.48576 1.05445 1.72548 1.08586 1.22345 0.84848 1.04273 0.90615 1.22711 0.96864 1.03054 0.93027 1.22736 0.90750 0.97170 0.92924 0.92490 1.61910 1.02012 1.60009 1.01626 1.22566 0.88455 0.96272 1.00009 1.20639 0.95202 0.95685 0.82533 1.44381 1.08379 1.73346 1.07702 1.19461 0.89073 1.24731 1.06433 0.91805 1.25854 0.99268 0.98565 1.00812 1.70161 1.11954 1.32523 1.43357 0.85303 0.77579 0.78632 0.78661 1.20305 1.21809 1.20314 1.21080 0.84593 0.96213 0.96199 1.22437 0.98455 0.97246 0.89253 1.22010 0.92435 1.00623 0.85207 0.88069 0.89576 0.85809 0.93387 0.87619 0.88531 0.83083 0.87101 0.87616 0.89413 0.90255 0.87790 0.96056 0.89017 0.98365 0.92379 0.93965 0.96911 0.92393 0.89971 0.95623 0.92242 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.87 71.24 0.63 -1.08 16 2 C 0.50 10.34 7.78 87.66 0.68 11.02 16 3 O -0.60 -18.59 16.67 -3.05 -0.05 -18.64 16 4 N -0.60 -9.56 2.36 -851.13 -2.01 -11.57 16 5 C 0.07 0.53 10.29 127.77 1.31 1.84 16 6 C 0.10 1.61 5.12 85.63 0.44 2.05 16 7 C 0.51 12.42 7.92 87.66 0.69 13.11 16 8 O -0.58 -19.74 16.69 -3.04 -0.05 -19.79 16 9 N -0.62 -13.74 3.33 -811.79 -2.70 -16.44 16 10 C 0.10 1.43 6.48 86.72 0.56 1.99 16 11 C -0.12 -2.18 5.43 31.78 0.17 -2.01 16 12 C 0.07 1.84 2.71 46.32 0.13 1.97 16 13 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 14 N -0.53 -17.64 4.53 -861.90 -3.90 -21.54 16 15 C 0.06 2.04 5.49 86.38 0.47 2.51 16 16 C 0.19 9.01 5.40 86.35 0.47 9.47 16 17 N -0.61 -31.79 3.03 -698.15 -2.12 -33.90 16 18 C -0.27 -14.96 9.62 84.03 0.81 -14.15 16 19 H 0.06 3.49 7.87 -2.91 -0.02 3.47 16 20 C -0.05 -2.79 4.97 84.86 0.42 -2.36 16 21 N -0.93 -55.53 11.17 21.65 0.24 -55.29 16 22 Si 0.97 45.05 29.58 68.60 2.03 47.08 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 26 C 0.14 6.35 6.69 86.35 0.58 6.93 16 27 C 0.06 1.97 5.46 86.38 0.47 2.44 16 28 C 0.12 3.24 5.23 86.86 0.45 3.70 16 29 H 0.10 0.86 8.11 -2.39 -0.02 0.84 16 30 H 0.09 1.02 8.12 -2.39 -0.02 1.00 16 31 H 0.12 0.38 7.40 -2.39 -0.02 0.36 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.11 0.14 6.44 -2.38 -0.02 0.12 16 34 H 0.10 0.24 7.89 -2.39 -0.02 0.23 16 35 H 0.15 0.94 7.89 -2.39 -0.02 0.92 16 36 H 0.11 1.85 7.42 -2.39 -0.02 1.83 16 37 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.10 1.50 7.94 -2.39 -0.02 1.48 16 41 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 2.80 6.93 -2.39 -0.02 2.79 16 43 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.06 3.15 6.20 -2.39 -0.01 3.13 16 45 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 46 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16 48 H 0.08 2.61 6.73 -2.39 -0.02 2.59 16 49 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 51 H 0.06 1.78 7.74 -2.39 -0.02 1.76 16 Total: -1.00 -83.73 400.52 0.64 -83.09 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.90 Total: 9.58 kcal Atomic # 6 Polarization: 29.13 SS G_CDS: 8.30 Total: 37.42 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -10.49 Total: -138.74 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.10 Total: -38.43 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -83.73 0.64 -83.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700167037.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.316 kcal (2) G-P(sol) polarization free energy of solvation -83.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds