Wall clock time and date at job start Tue Mar 31 2020 22:23:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.46006 * 118.52338 * 2 1
4 4 C 1.52983 * 110.10163 * 162.07333 * 3 2 1
5 5 N 1.47192 * 108.73125 * 50.07644 * 4 3 2
6 6 C 1.46899 * 110.99857 * 54.36383 * 5 4 3
7 7 C 1.50701 * 109.46829 * 170.42326 * 6 5 4
8 8 O 1.21290 * 119.99929 * 3.26454 * 7 6 5
9 9 N 1.34771 * 120.00365 * 183.27013 * 7 6 5
10 10 C 1.46933 * 120.62703 * 354.50052 * 9 7 6
11 11 C 1.53189 * 108.77722 * 126.36889 * 10 9 7
12 12 C 1.53038 * 109.31231 * 54.63257 * 11 10 9
13 13 C 1.53039 * 109.54323 * 298.63391 * 12 11 10
14 14 C 1.46923 * 120.63476 * 174.21641 * 9 7 6
15 15 H 1.09001 * 109.58749 * 113.84693 * 14 9 7
16 16 C 1.52998 * 109.58970 * 353.41952 * 14 9 7
17 17 N 1.46505 * 109.46869 * 73.43129 * 16 14 9
18 18 C 1.36940 * 119.99616 * 184.19038 * 17 16 14
19 19 H 1.07997 * 120.00088 * 5.05543 * 18 17 16
20 20 C 1.38818 * 119.99566 * 185.06136 * 18 17 16
21 21 N 1.31621 * 120.00129 * 5.03867 * 20 18 17
22 22 Si 1.86799 * 119.99890 * 185.04871 * 20 18 17
23 23 H 1.48499 * 109.47047 * 359.97438 * 22 20 18
24 24 H 1.48496 * 109.47336 * 119.99521 * 22 20 18
25 25 H 1.48507 * 109.46722 * 239.99851 * 22 20 18
26 26 C 1.46901 * 110.16890 * 290.99527 * 5 4 3
27 27 C 1.33714 * 118.54040 * 179.75488 * 2 1 3
28 28 O 1.21279 * 118.62273 * 1.66061 * 27 2 1
29 29 H 1.09007 * 109.46807 * 185.32978 * 1 2 3
30 30 H 1.08992 * 109.47507 * 305.32986 * 1 2 3
31 31 H 1.08999 * 109.46957 * 65.33603 * 1 2 3
32 32 H 1.09003 * 109.51945 * 41.76921 * 3 2 1
33 33 H 1.08996 * 109.07010 * 282.09614 * 3 2 1
34 34 H 1.08997 * 109.59357 * 290.29439 * 4 3 2
35 35 H 1.09005 * 109.71784 * 169.92211 * 4 3 2
36 36 H 1.08997 * 109.47028 * 290.41559 * 6 5 4
37 37 H 1.08999 * 109.47522 * 50.42777 * 6 5 4
38 38 H 1.09005 * 109.58442 * 246.15516 * 10 9 7
39 39 H 1.08994 * 109.58663 * 6.57359 * 10 9 7
40 40 H 1.08995 * 109.49799 * 174.58289 * 11 10 9
41 41 H 1.09000 * 109.49763 * 294.64937 * 11 10 9
42 42 H 1.09002 * 109.46071 * 58.65797 * 12 11 10
43 43 H 1.09002 * 109.46120 * 178.62921 * 12 11 10
44 44 H 1.08994 * 109.50385 * 181.31814 * 13 12 11
45 45 H 1.09005 * 109.49831 * 301.41919 * 13 12 11
46 46 H 1.08990 * 109.47723 * 193.43397 * 16 14 9
47 47 H 1.09005 * 109.46820 * 313.43963 * 16 14 9
48 48 H 0.96996 * 119.99928 * 4.19235 * 17 16 14
49 49 H 0.96998 * 119.99959 * 179.97438 * 21 20 18
50 50 H 1.08995 * 109.39052 * 290.13958 * 26 5 4
51 51 H 1.09001 * 109.37720 * 170.45464 * 26 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1622 1.2828 0.0000
4 6 3.6142 1.0921 0.4422
5 7 4.2078 -0.0018 -0.3437
6 6 4.0597 0.2445 -1.7843
7 6 4.8757 -0.7630 -2.5525
8 8 5.4699 -1.6396 -1.9614
9 7 4.9453 -0.6898 -3.8965
10 6 4.1375 0.2899 -4.6356
11 6 5.0633 1.1128 -5.5370
12 6 5.8746 0.1680 -6.4265
13 6 6.7378 -0.7439 -5.5515
14 6 5.8351 -1.5840 -4.6498
15 1 5.2395 -2.2608 -5.2625
16 6 6.6951 -2.3917 -3.6758
17 7 5.8703 -3.4159 -3.0298
18 6 6.4060 -4.2088 -2.0502
19 1 7.4099 -4.0261 -1.6965
20 6 5.6586 -5.2474 -1.5121
21 7 4.4744 -5.5332 -2.0105
22 14 6.3333 -6.2393 -0.0802
23 1 7.6748 -5.7222 0.2916
24 1 5.4163 -6.1184 1.0815
25 1 6.4456 -7.6663 -0.4760
26 6 3.6020 -1.2850 0.0362
27 6 2.1038 -1.1746 0.0050
28 8 1.4466 -2.1936 -0.0215
29 1 -0.3633 -1.0233 0.0955
30 1 -0.3634 0.5942 0.8383
31 1 -0.3633 0.4288 -0.9339
32 1 1.6628 1.9687 0.6844
33 1 2.1425 1.6988 -1.0073
34 1 3.6433 0.8386 1.5019
35 1 4.1746 2.0112 0.2708
36 1 3.0102 0.1503 -2.0629
37 1 4.4093 1.2499 -2.0189
38 1 3.4006 -0.2310 -5.2471
39 1 3.6304 0.9504 -3.9324
40 1 4.4665 1.7775 -6.1615
41 1 5.7405 1.7037 -4.9202
42 1 5.1958 -0.4396 -7.0251
43 1 6.5166 0.7519 -7.0860
44 1 7.3327 -1.4005 -6.1862
45 1 7.3996 -0.1359 -4.9345
46 1 7.5086 -2.8707 -4.2205
47 1 7.1078 -1.7262 -2.9176
48 1 4.9449 -3.5323 -3.2961
49 1 3.9523 -6.2592 -1.6347
50 1 3.9242 -1.5536 1.0422
51 1 3.9225 -2.0573 -0.6630
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001700344770.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:23:41
Heat of formation + Delta-G solvation = 12.575975 kcal
Electronic energy + Delta-G solvation = -32687.541179 eV
Core-core repulsion = 28624.728485 eV
Total energy + Delta-G solvation = -4062.812694 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.88292 -39.83319 -37.49851 -36.59621 -34.95612 -34.23540 -32.61053 -31.91439
-29.96731 -29.71363 -28.96630 -27.01060 -25.85598 -24.57313 -24.29299 -22.85130
-22.46275 -21.19415 -20.49257 -19.11999 -18.05359 -17.22470 -16.67470 -16.62274
-16.20318 -15.89441 -15.58835 -15.26620 -14.72585 -14.59670 -14.37924 -14.32061
-14.00326 -13.53219 -13.39648 -13.26149 -12.98180 -12.92849 -12.84968 -12.77573
-12.42140 -12.19731 -12.09645 -12.01180 -11.72201 -11.50117 -11.37264 -11.11031
-10.99386 -10.87515 -10.66350 -10.59674 -10.57845 -10.23627 -10.13205 -9.73947
-9.39867 -8.78299 -8.56450 -8.45772 -8.10065 -7.90299 -6.38567 -5.41536
-2.61811 2.79478 2.90995 3.28634 3.35295 3.64442 3.69518 3.72123
3.96419 4.45700 4.71295 4.77735 4.78383 4.81740 4.85224 4.92347
4.99132 5.09017 5.21862 5.23575 5.28203 5.31866 5.40308 5.42256
5.45642 5.48271 5.64663 5.65516 5.74697 5.80183 5.80373 5.84209
5.92688 5.97409 6.03921 6.09001 6.18966 6.23856 6.37917 6.39811
6.62383 6.72829 6.78352 6.96682 7.01169 7.31359 7.43627 7.99047
8.02428 8.29671 8.75938 9.01041 9.87241 10.46032 10.81419 11.82039
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.007366 B = 0.006524 C = 0.003895
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3800.141330 B = 4290.577518 C = 7186.991787
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.074 3.926
2 N -0.620 5.620
3 C 0.079 3.921
4 C 0.037 3.963
5 N -0.504 5.504
6 C 0.033 3.967
7 C 0.471 3.529
8 O -0.419 6.419
9 N -0.616 5.616
10 C 0.112 3.888
11 C -0.133 4.133
12 C -0.118 4.118
13 C -0.127 4.127
14 C 0.143 3.857
15 H 0.066 0.934
16 C 0.164 3.836
17 N -0.696 5.696
18 C -0.197 4.197
19 H 0.062 0.938
20 C -0.022 4.022
21 N -0.937 5.937
22 Si 0.896 3.104
23 H -0.284 1.284
24 H -0.295 1.295
25 H -0.298 1.298
26 C 0.037 3.963
27 C 0.483 3.517
28 O -0.534 6.534
29 H 0.089 0.911
30 H 0.057 0.943
31 H 0.053 0.947
32 H 0.078 0.922
33 H 0.064 0.936
34 H 0.088 0.912
35 H 0.097 0.903
36 H 0.055 0.945
37 H 0.096 0.904
38 H 0.062 0.938
39 H 0.074 0.926
40 H 0.068 0.932
41 H 0.065 0.935
42 H 0.062 0.938
43 H 0.060 0.940
44 H 0.072 0.928
45 H 0.065 0.935
46 H 0.010 0.990
47 H 0.041 0.959
48 H 0.377 0.623
49 H 0.248 0.752
50 H 0.110 0.890
51 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.181 22.682 -3.563 23.338
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 N -0.356 5.356
3 C -0.046 4.046
4 C -0.091 4.091
5 N -0.227 5.227
6 C -0.098 4.098
7 C 0.255 3.745
8 O -0.285 6.285
9 N -0.355 5.355
10 C -0.012 4.012
11 C -0.172 4.172
12 C -0.155 4.155
13 C -0.166 4.166
14 C 0.040 3.960
15 H 0.084 0.916
16 C 0.036 3.964
17 N -0.338 5.338
18 C -0.329 4.329
19 H 0.080 0.920
20 C -0.216 4.216
21 N -0.588 5.588
22 Si 0.729 3.271
23 H -0.210 1.210
24 H -0.223 1.223
25 H -0.226 1.226
26 C -0.093 4.093
27 C 0.271 3.729
28 O -0.409 6.409
29 H 0.107 0.893
30 H 0.075 0.925
31 H 0.072 0.928
32 H 0.096 0.904
33 H 0.082 0.918
34 H 0.106 0.894
35 H 0.116 0.884
36 H 0.073 0.927
37 H 0.114 0.886
38 H 0.080 0.920
39 H 0.092 0.908
40 H 0.086 0.914
41 H 0.084 0.916
42 H 0.081 0.919
43 H 0.079 0.921
44 H 0.091 0.909
45 H 0.084 0.916
46 H 0.027 0.973
47 H 0.058 0.942
48 H 0.210 0.790
49 H 0.058 0.942
50 H 0.128 0.872
51 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -3.504 21.492 -2.968 21.977
hybrid contribution -1.175 -0.214 0.498 1.294
sum -4.679 21.278 -2.471 21.926
Atomic orbital electron populations
1.21670 0.80098 1.04418 1.00704 1.47469 1.07133 1.06083 1.74924
1.22106 0.94980 0.85579 1.01937 1.22642 0.90934 0.96239 0.99325
1.62178 1.55449 1.01758 1.03280 1.22111 0.99023 0.99850 0.88799
1.20282 0.85191 0.86637 0.82390 1.91239 1.40426 1.29403 1.67412
1.47900 1.44501 1.37571 1.05515 1.21566 0.93302 0.91056 0.95247
1.21910 0.98918 0.97955 0.98380 1.21492 0.98652 0.97756 0.97623
1.21839 0.98067 0.98601 0.98074 1.21372 0.91024 0.90301 0.93285
0.91593 1.20822 0.92403 0.90836 0.92352 1.42146 1.11093 1.37303
1.43285 1.19079 0.97790 1.05299 1.10707 0.91963 1.24565 0.97146
0.99546 1.00389 1.69662 1.12446 1.32909 1.43741 0.86247 0.77658
0.79846 0.83369 1.20954 1.22293 1.22609 1.22774 0.85504 0.94227
1.06829 1.21687 0.92930 0.82783 0.75535 1.90741 1.67275 1.34305
1.48553 0.89260 0.92453 0.92796 0.90402 0.91820 0.89384 0.88428
0.92732 0.88612 0.91986 0.90762 0.91374 0.91626 0.91915 0.92089
0.90903 0.91632 0.97288 0.94168 0.78980 0.94161 0.87195 0.83267
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.83 10.54 59.84 0.63 1.46 16
2 N -0.62 -8.09 3.03 -182.49 -0.55 -8.64 16
3 C 0.08 0.70 5.71 -4.32 -0.02 0.67 16
4 C 0.04 0.36 6.03 -3.67 -0.02 0.34 16
5 N -0.50 -7.18 4.78 -237.55 -1.14 -8.31 16
6 C 0.03 0.45 2.87 -4.98 -0.01 0.43 16
7 C 0.47 8.26 7.08 -10.99 -0.08 8.18 16
8 O -0.42 -9.40 7.81 5.55 0.04 -9.35 16
9 N -0.62 -9.35 2.98 -165.47 -0.49 -9.84 16
10 C 0.11 1.22 6.36 -3.71 -0.02 1.20 16
11 C -0.13 -1.19 6.08 -26.61 -0.16 -1.35 16
12 C -0.12 -1.16 5.88 -26.69 -0.16 -1.32 16
13 C -0.13 -1.60 5.31 -26.83 -0.14 -1.74 16
14 C 0.14 2.37 2.89 -67.82 -0.20 2.17 16
15 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16
16 C 0.16 3.48 4.90 -4.04 -0.02 3.46 16
17 N -0.70 -18.43 3.26 -59.91 -0.20 -18.62 16
18 C -0.20 -5.82 9.22 -15.06 -0.14 -5.96 16
19 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16
20 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16
21 N -0.94 -30.37 13.08 55.49 0.73 -29.64 16
22 Si 0.90 24.36 29.56 -169.99 -5.02 19.33 16
23 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16
24 H -0.30 -8.16 7.11 56.52 0.40 -7.75 16
25 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16
26 C 0.04 0.67 5.49 -5.19 -0.03 0.64 16
27 C 0.48 8.63 6.83 -11.67 -0.08 8.56 16
28 O -0.53 -12.12 16.08 5.56 0.09 -12.03 16
29 H 0.09 1.25 6.70 -51.93 -0.35 0.90 16
30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
32 H 0.08 0.51 8.13 -51.93 -0.42 0.09 16
33 H 0.06 0.50 7.08 -51.93 -0.37 0.13 16
34 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16
35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.05 0.73 5.94 -51.93 -0.31 0.43 16
37 H 0.10 0.98 7.72 -51.93 -0.40 0.58 16
38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
39 H 0.07 0.67 5.92 -51.93 -0.31 0.36 16
40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16
41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
46 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16
47 H 0.04 0.92 6.36 -51.93 -0.33 0.59 16
48 H 0.38 10.80 7.65 -40.82 -0.31 10.49 16
49 H 0.25 7.94 8.31 -40.82 -0.34 7.60 16
50 H 0.11 1.95 8.14 -51.93 -0.42 1.52 16
51 H 0.15 3.52 5.73 -51.93 -0.30 3.22 16
LS Contribution 383.81 15.07 5.78 5.78
Total: -1.00 -37.63 383.81 -9.86 -47.50
By element:
Atomic # 1 Polarization: 16.41 SS G_CDS: -8.55 Total: 7.85 kcal
Atomic # 6 Polarization: 16.53 SS G_CDS: -0.55 Total: 15.97 kcal
Atomic # 7 Polarization: -73.41 SS G_CDS: -1.65 Total: -75.06 kcal
Atomic # 8 Polarization: -21.51 SS G_CDS: 0.13 Total: -21.38 kcal
Atomic # 14 Polarization: 24.36 SS G_CDS: -5.02 Total: 19.33 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -37.63 -9.86 -47.50 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700344770.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.072 kcal
(2) G-P(sol) polarization free energy of solvation -37.633 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.439 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.496 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.576 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds