Wall clock time and date at job start Tue Mar 31 2020 22:23:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46495 * 1
3 3 C 1.46006 * 118.52338 * 2 1
4 4 C 1.52983 * 110.10163 * 162.07333 * 3 2 1
5 5 N 1.47192 * 108.73125 * 50.07644 * 4 3 2
6 6 C 1.46899 * 110.99857 * 54.36383 * 5 4 3
7 7 C 1.50701 * 109.46829 * 170.42326 * 6 5 4
8 8 O 1.21290 * 119.99929 * 3.26454 * 7 6 5
9 9 N 1.34771 * 120.00365 * 183.27013 * 7 6 5
10 10 C 1.46933 * 120.62703 * 354.50052 * 9 7 6
11 11 C 1.53189 * 108.77722 * 126.36889 * 10 9 7
12 12 C 1.53038 * 109.31231 * 54.63257 * 11 10 9
13 13 C 1.53039 * 109.54323 * 298.63391 * 12 11 10
14 14 C 1.46923 * 120.63476 * 174.21641 * 9 7 6
15 15 H 1.09001 * 109.58749 * 113.84693 * 14 9 7
16 16 C 1.52998 * 109.58970 * 353.41952 * 14 9 7
17 17 N 1.46505 * 109.46869 * 73.43129 * 16 14 9
18 18 C 1.36940 * 119.99616 * 184.19038 * 17 16 14
19 19 H 1.07997 * 120.00088 * 5.05543 * 18 17 16
20 20 C 1.38818 * 119.99566 * 185.06136 * 18 17 16
21 21 N 1.31621 * 120.00129 * 5.03867 * 20 18 17
22 22 Si 1.86799 * 119.99890 * 185.04871 * 20 18 17
23 23 H 1.48499 * 109.47047 * 359.97438 * 22 20 18
24 24 H 1.48496 * 109.47336 * 119.99521 * 22 20 18
25 25 H 1.48507 * 109.46722 * 239.99851 * 22 20 18
26 26 C 1.46901 * 110.16890 * 290.99527 * 5 4 3
27 27 C 1.33714 * 118.54040 * 179.75488 * 2 1 3
28 28 O 1.21279 * 118.62273 * 1.66061 * 27 2 1
29 29 H 1.09007 * 109.46807 * 185.32978 * 1 2 3
30 30 H 1.08992 * 109.47507 * 305.32986 * 1 2 3
31 31 H 1.08999 * 109.46957 * 65.33603 * 1 2 3
32 32 H 1.09003 * 109.51945 * 41.76921 * 3 2 1
33 33 H 1.08996 * 109.07010 * 282.09614 * 3 2 1
34 34 H 1.08997 * 109.59357 * 290.29439 * 4 3 2
35 35 H 1.09005 * 109.71784 * 169.92211 * 4 3 2
36 36 H 1.08997 * 109.47028 * 290.41559 * 6 5 4
37 37 H 1.08999 * 109.47522 * 50.42777 * 6 5 4
38 38 H 1.09005 * 109.58442 * 246.15516 * 10 9 7
39 39 H 1.08994 * 109.58663 * 6.57359 * 10 9 7
40 40 H 1.08995 * 109.49799 * 174.58289 * 11 10 9
41 41 H 1.09000 * 109.49763 * 294.64937 * 11 10 9
42 42 H 1.09002 * 109.46071 * 58.65797 * 12 11 10
43 43 H 1.09002 * 109.46120 * 178.62921 * 12 11 10
44 44 H 1.08994 * 109.50385 * 181.31814 * 13 12 11
45 45 H 1.09005 * 109.49831 * 301.41919 * 13 12 11
46 46 H 1.08990 * 109.47723 * 193.43397 * 16 14 9
47 47 H 1.09005 * 109.46820 * 313.43963 * 16 14 9
48 48 H 0.96996 * 119.99928 * 4.19235 * 17 16 14
49 49 H 0.96998 * 119.99959 * 179.97438 * 21 20 18
50 50 H 1.08995 * 109.39052 * 290.13958 * 26 5 4
51 51 H 1.09001 * 109.37720 * 170.45464 * 26 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1622 1.2828 0.0000
4 6 3.6142 1.0921 0.4422
5 7 4.2078 -0.0018 -0.3437
6 6 4.0597 0.2445 -1.7843
7 6 4.8757 -0.7630 -2.5525
8 8 5.4699 -1.6396 -1.9614
9 7 4.9453 -0.6898 -3.8965
10 6 4.1375 0.2899 -4.6356
11 6 5.0633 1.1128 -5.5370
12 6 5.8746 0.1680 -6.4265
13 6 6.7378 -0.7439 -5.5515
14 6 5.8351 -1.5840 -4.6498
15 1 5.2395 -2.2608 -5.2625
16 6 6.6951 -2.3917 -3.6758
17 7 5.8703 -3.4159 -3.0298
18 6 6.4060 -4.2088 -2.0502
19 1 7.4099 -4.0261 -1.6965
20 6 5.6586 -5.2474 -1.5121
21 7 4.4744 -5.5332 -2.0105
22 14 6.3333 -6.2393 -0.0802
23 1 7.6748 -5.7222 0.2916
24 1 5.4163 -6.1184 1.0815
25 1 6.4456 -7.6663 -0.4760
26 6 3.6020 -1.2850 0.0362
27 6 2.1038 -1.1746 0.0050
28 8 1.4466 -2.1936 -0.0215
29 1 -0.3633 -1.0233 0.0955
30 1 -0.3634 0.5942 0.8383
31 1 -0.3633 0.4288 -0.9339
32 1 1.6628 1.9687 0.6844
33 1 2.1425 1.6988 -1.0073
34 1 3.6433 0.8386 1.5019
35 1 4.1746 2.0112 0.2708
36 1 3.0102 0.1503 -2.0629
37 1 4.4093 1.2499 -2.0189
38 1 3.4006 -0.2310 -5.2471
39 1 3.6304 0.9504 -3.9324
40 1 4.4665 1.7775 -6.1615
41 1 5.7405 1.7037 -4.9202
42 1 5.1958 -0.4396 -7.0251
43 1 6.5166 0.7519 -7.0860
44 1 7.3327 -1.4005 -6.1862
45 1 7.3996 -0.1359 -4.9345
46 1 7.5086 -2.8707 -4.2205
47 1 7.1078 -1.7262 -2.9176
48 1 4.9449 -3.5323 -3.2961
49 1 3.9523 -6.2592 -1.6347
50 1 3.9242 -1.5536 1.0422
51 1 3.9225 -2.0573 -0.6630
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001700344770.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:23:40
Heat of formation + Delta-G solvation = -17.355087 kcal
Electronic energy + Delta-G solvation = -32688.839087 eV
Core-core repulsion = 28624.728485 eV
Total energy + Delta-G solvation = -4064.110602 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-42.08880 -41.10365 -38.72778 -37.82143 -36.42779 -35.80720 -33.86750 -33.53719
-31.48467 -30.96173 -30.16398 -28.07864 -27.39081 -25.79058 -25.54038 -24.28303
-23.78864 -22.58448 -21.54625 -20.33017 -19.33724 -18.85502 -18.16015 -17.87367
-17.36438 -17.09209 -16.84347 -16.64621 -16.28703 -15.88133 -15.69254 -15.41851
-15.21436 -14.98973 -14.85117 -14.50332 -14.39544 -14.14705 -13.97495 -13.82215
-13.68403 -13.46960 -13.42523 -13.10106 -13.02406 -12.84393 -12.70755 -12.64173
-12.46121 -12.16550 -12.09319 -12.01349 -11.81621 -11.67006 -11.58613 -11.42611
-11.27936 -10.79612 -9.84035 -9.83609 -9.38029 -9.17570 -8.56665 -7.79416
-4.96794 1.40925 1.41604 1.44585 1.53142 1.85339 2.06079 2.13673
2.64021 2.85843 3.44974 3.54631 3.65266 3.85274 3.89033 3.94094
4.01493 4.07217 4.17454 4.22445 4.27377 4.36381 4.38674 4.39076
4.44735 4.53086 4.54498 4.57942 4.67804 4.70542 4.78667 4.83646
4.89440 4.92506 4.97550 5.04865 5.09915 5.17238 5.19265 5.28097
5.33353 5.35737 5.55013 5.58847 5.65587 5.86921 5.97770 6.27019
6.40494 6.76927 7.00385 7.46968 7.71916 8.27510 8.50265 9.44909
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.007366 B = 0.006524 C = 0.003895
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3800.141330 B = 4290.577518 C = 7186.991787
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.070 3.930
2 N -0.607 5.607
3 C 0.073 3.927
4 C 0.035 3.965
5 N -0.514 5.514
6 C 0.046 3.954
7 C 0.460 3.540
8 O -0.483 6.483
9 N -0.615 5.615
10 C 0.104 3.896
11 C -0.124 4.124
12 C -0.115 4.115
13 C -0.117 4.117
14 C 0.148 3.852
15 H 0.047 0.953
16 C 0.168 3.832
17 N -0.699 5.699
18 C -0.184 4.184
19 H 0.058 0.942
20 C -0.087 4.087
21 N -0.974 5.974
22 Si 0.956 3.044
23 H -0.269 1.269
24 H -0.305 1.305
25 H -0.295 1.295
26 C 0.049 3.951
27 C 0.481 3.519
28 O -0.600 6.600
29 H 0.052 0.948
30 H 0.092 0.908
31 H 0.078 0.922
32 H 0.118 0.882
33 H 0.090 0.910
34 H 0.086 0.914
35 H 0.138 0.862
36 H 0.058 0.942
37 H 0.143 0.857
38 H 0.059 0.941
39 H 0.101 0.899
40 H 0.100 0.900
41 H 0.071 0.929
42 H 0.060 0.940
43 H 0.084 0.916
44 H 0.074 0.926
45 H 0.066 0.934
46 H 0.005 0.995
47 H 0.028 0.972
48 H 0.362 0.638
49 H 0.239 0.761
50 H 0.099 0.901
51 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.351 27.959 -4.336 28.626
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 N -0.341 5.341
3 C -0.049 4.049
4 C -0.092 4.092
5 N -0.237 5.237
6 C -0.085 4.085
7 C 0.246 3.754
8 O -0.353 6.353
9 N -0.353 5.353
10 C -0.018 4.018
11 C -0.162 4.162
12 C -0.152 4.152
13 C -0.156 4.156
14 C 0.045 3.955
15 H 0.065 0.935
16 C 0.041 3.959
17 N -0.339 5.339
18 C -0.317 4.317
19 H 0.076 0.924
20 C -0.277 4.277
21 N -0.628 5.628
22 Si 0.788 3.212
23 H -0.194 1.194
24 H -0.233 1.233
25 H -0.223 1.223
26 C -0.082 4.082
27 C 0.268 3.732
28 O -0.481 6.481
29 H 0.071 0.929
30 H 0.111 0.889
31 H 0.096 0.904
32 H 0.136 0.864
33 H 0.108 0.892
34 H 0.105 0.895
35 H 0.156 0.844
36 H 0.076 0.924
37 H 0.161 0.839
38 H 0.078 0.922
39 H 0.119 0.881
40 H 0.118 0.882
41 H 0.090 0.910
42 H 0.079 0.921
43 H 0.103 0.897
44 H 0.093 0.907
45 H 0.085 0.915
46 H 0.022 0.978
47 H 0.046 0.954
48 H 0.193 0.807
49 H 0.048 0.952
50 H 0.117 0.883
51 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -3.646 26.911 -3.786 27.419
hybrid contribution -1.107 -1.669 0.701 2.122
sum -4.753 25.242 -3.084 25.870
Atomic orbital electron populations
1.21843 0.78734 1.03114 1.03473 1.47549 1.08171 1.06106 1.72232
1.22494 0.94190 0.83673 1.04577 1.22885 0.91917 0.95787 0.98574
1.62152 1.55933 1.01276 1.04373 1.22100 0.98296 1.00408 0.87694
1.21196 0.84493 0.86639 0.83068 1.91206 1.43245 1.32135 1.68751
1.48057 1.44265 1.37736 1.05269 1.21925 0.93375 0.90601 0.95915
1.21883 0.98693 0.97547 0.98102 1.21501 0.98653 0.97572 0.97489
1.21764 0.97670 0.98533 0.97655 1.21169 0.91162 0.90849 0.92370
0.93503 1.20856 0.92585 0.89909 0.92523 1.42219 1.10688 1.38085
1.42921 1.19324 0.97257 1.04662 1.10461 0.92405 1.25245 0.97758
1.01448 1.03292 1.69832 1.13924 1.33683 1.45356 0.85266 0.77364
0.78441 0.80117 1.19351 1.23333 1.22328 1.22266 0.86247 0.95265
1.04450 1.21603 0.92626 0.83575 0.75379 1.90705 1.68290 1.36977
1.52093 0.92874 0.88921 0.90366 0.86407 0.89220 0.89528 0.84369
0.92366 0.83904 0.92242 0.88122 0.88208 0.90989 0.92105 0.89717
0.90718 0.91547 0.97769 0.95427 0.80733 0.95215 0.88324 0.89277
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.44 10.54 127.77 1.35 2.78 16
2 N -0.61 -14.66 3.03 -850.24 -2.57 -17.23 16
3 C 0.07 0.93 5.71 86.47 0.49 1.42 16
4 C 0.04 0.54 6.03 86.24 0.52 1.06 16
5 N -0.51 -14.07 4.78 -905.48 -4.33 -18.40 16
6 C 0.05 1.11 2.87 85.56 0.25 1.36 16
7 C 0.46 16.24 7.08 87.66 0.62 16.86 16
8 O -0.48 -22.89 7.81 -3.06 -0.02 -22.91 16
9 N -0.62 -18.25 2.98 -795.81 -2.37 -20.62 16
10 C 0.10 1.93 6.36 86.36 0.55 2.47 16
11 C -0.12 -1.64 6.08 30.67 0.19 -1.45 16
12 C -0.11 -1.87 5.88 30.62 0.18 -1.69 16
13 C -0.12 -2.78 5.31 30.53 0.16 -2.62 16
14 C 0.15 4.98 2.89 44.83 0.13 5.11 16
15 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
16 C 0.17 7.49 4.90 86.38 0.42 7.91 16
17 N -0.70 -39.38 3.26 -343.44 -1.12 -40.50 16
18 C -0.18 -11.47 9.22 84.03 0.77 -10.70 16
19 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16
20 C -0.09 -5.63 5.50 84.86 0.47 -5.16 16
21 N -0.97 -67.11 13.08 21.65 0.28 -66.82 16
22 Si 0.96 52.73 29.56 68.60 2.03 54.76 16
23 H -0.27 -13.95 7.11 99.48 0.71 -13.25 16
24 H -0.30 -17.16 7.11 99.48 0.71 -16.45 16
25 H -0.30 -16.02 7.11 99.48 0.71 -15.32 16
26 C 0.05 1.89 5.49 85.42 0.47 2.36 16
27 C 0.48 17.84 6.83 87.68 0.60 18.44 16
28 O -0.60 -29.39 16.08 -3.02 -0.05 -29.44 16
29 H 0.05 1.51 6.70 -2.38 -0.02 1.49 16
30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16
31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16
32 H 0.12 0.73 8.13 -2.39 -0.02 0.71 16
33 H 0.09 0.80 7.08 -2.39 -0.02 0.78 16
34 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16
35 H 0.14 1.11 8.14 -2.38 -0.02 1.09 16
36 H 0.06 1.41 5.94 -2.39 -0.01 1.40 16
37 H 0.14 2.14 7.72 -2.39 -0.02 2.12 16
38 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16
39 H 0.10 1.33 5.92 -2.39 -0.01 1.32 16
40 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16
41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
42 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16
44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16
45 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16
46 H 0.00 0.21 8.08 -2.39 -0.02 0.19 16
47 H 0.03 1.33 6.36 -2.38 -0.02 1.31 16
48 H 0.36 22.26 7.65 -92.71 -0.71 21.55 16
49 H 0.24 16.26 8.31 -92.71 -0.77 15.49 16
50 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16
51 H 0.09 4.63 5.73 -2.39 -0.01 4.62 16
Total: -1.00 -94.07 383.81 -0.77 -94.84
By element:
Atomic # 1 Polarization: 27.93 SS G_CDS: 0.22 Total: 28.15 kcal
Atomic # 6 Polarization: 31.01 SS G_CDS: 7.17 Total: 38.18 kcal
Atomic # 7 Polarization: -153.46 SS G_CDS: -10.11 Total: -163.57 kcal
Atomic # 8 Polarization: -52.28 SS G_CDS: -0.07 Total: -52.35 kcal
Atomic # 14 Polarization: 52.73 SS G_CDS: 2.03 Total: 54.76 kcal
Total: -94.07 -0.77 -94.84 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700344770.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.484 kcal
(2) G-P(sol) polarization free energy of solvation -94.066 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.582 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.839 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.355 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds