Wall clock time and date at job start Tue Mar 31 2020 22:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46001 * 118.53448 * 2 1 4 4 C 1.53001 * 110.03960 * 161.86444 * 3 2 1 5 5 N 1.47189 * 108.71707 * 50.30100 * 4 3 2 6 6 C 1.46898 * 111.00187 * 167.62383 * 5 4 3 7 7 C 1.50700 * 109.47366 * 188.94164 * 6 5 4 8 8 O 1.21287 * 120.00071 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00343 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00310 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47338 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47335 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.46926 * 180.02562 * 12 11 10 14 14 C 1.36938 * 119.99704 * 269.99524 * 13 12 11 15 15 H 1.08002 * 119.99492 * 140.53695 * 14 13 12 16 16 C 1.38810 * 120.00117 * 320.54009 * 14 13 12 17 17 N 1.31616 * 119.99886 * 340.28455 * 16 14 13 18 18 Si 1.86801 * 119.99835 * 160.28420 * 16 14 13 19 19 H 1.48501 * 109.46852 * 59.99981 * 18 16 14 20 20 H 1.48497 * 109.47146 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47493 * 300.00116 * 18 16 14 22 22 C 1.46500 * 120.00058 * 90.00296 * 13 12 11 23 23 C 1.52994 * 117.49555 * 183.28572 * 22 13 12 24 24 C 1.52992 * 117.49879 * 114.66132 * 22 13 12 25 25 C 1.46903 * 110.17769 * 290.99254 * 5 4 3 26 26 C 1.33715 * 118.53237 * 180.02562 * 2 1 3 27 27 O 1.21280 * 118.62591 * 1.66201 * 26 2 1 28 28 H 1.09001 * 109.47474 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47292 * 299.97993 * 1 2 3 30 30 H 1.08999 * 109.47092 * 59.97332 * 1 2 3 31 31 H 1.08995 * 109.38146 * 282.03534 * 3 2 1 32 32 H 1.09007 * 109.37988 * 41.80911 * 3 2 1 33 33 H 1.09001 * 109.60725 * 290.53060 * 4 3 2 34 34 H 1.08995 * 109.59481 * 170.06995 * 4 3 2 35 35 H 1.08991 * 109.47274 * 68.94045 * 6 5 4 36 36 H 1.09006 * 109.46858 * 308.94034 * 6 5 4 37 37 H 0.97006 * 119.99231 * 0.02562 * 9 7 6 38 38 H 1.08991 * 109.47130 * 59.99974 * 10 9 7 39 39 H 1.09006 * 109.46949 * 299.99994 * 10 9 7 40 40 H 1.09003 * 109.46950 * 59.99725 * 11 10 9 41 41 H 1.09003 * 109.47157 * 300.00061 * 11 10 9 42 42 H 1.08998 * 109.46829 * 299.99539 * 12 11 10 43 43 H 1.08991 * 109.47019 * 59.99675 * 12 11 10 44 44 H 0.97005 * 119.99516 * 175.01509 * 17 16 14 45 45 H 1.09005 * 115.54906 * 328.99215 * 22 13 12 46 46 H 1.09000 * 117.50468 * 359.97438 * 23 22 13 47 47 H 1.09007 * 117.50001 * 145.02081 * 23 22 13 48 48 H 1.08999 * 117.50146 * 214.97496 * 24 22 13 49 49 H 1.08998 * 117.50173 * 359.97438 * 24 22 13 50 50 H 1.08999 * 109.38821 * 170.44906 * 25 5 4 51 51 H 1.09000 * 109.38283 * 290.24408 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1624 1.2827 0.0000 4 6 3.6129 1.0908 0.4474 5 7 4.2091 -0.0014 -0.3388 6 6 5.6675 -0.0388 -0.1666 7 6 6.2641 -1.0167 -1.1457 8 8 5.5453 -1.6226 -1.9120 9 7 7.5966 -1.2174 -1.1706 10 6 8.1767 -2.1676 -2.1229 11 6 9.6956 -2.2066 -1.9434 12 6 10.3013 -3.1996 -2.9374 13 7 11.7557 -3.2373 -2.7651 14 6 12.5524 -2.3851 -3.4822 15 1 13.4108 -1.9262 -3.0141 16 6 12.2568 -2.1111 -4.8105 17 7 11.4823 -2.9267 -5.4940 18 14 12.9582 -0.5848 -5.6277 19 1 14.4417 -0.6433 -5.5950 20 1 12.4968 -0.5220 -7.0378 21 1 12.4943 0.6238 -4.9003 22 6 12.3576 -4.1868 -1.8258 23 6 13.8742 -4.1251 -1.6335 24 6 13.2477 -5.2872 -2.4067 25 6 3.6018 -1.2855 0.0357 26 6 2.1037 -1.1747 -0.0005 27 8 1.4464 -2.1935 -0.0319 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5135 0.8901 30 1 -0.3633 0.5142 -0.8897 31 1 2.1469 1.7028 -1.0056 32 1 1.6619 1.9666 0.6855 33 1 3.6382 0.8346 1.5066 34 1 4.1724 2.0107 0.2781 35 1 5.9054 -0.3516 0.8500 36 1 6.0802 0.9538 -0.3473 37 1 8.1716 -0.7325 -0.5580 38 1 7.9385 -1.8546 -3.1393 39 1 7.7642 -3.1604 -1.9424 40 1 9.9334 -2.5200 -0.9268 41 1 10.1084 -1.2140 -2.1235 42 1 9.8885 -4.1920 -2.7567 43 1 10.0635 -2.8867 -3.9540 44 1 11.2168 -2.6989 -6.3988 45 1 11.7496 -4.4378 -0.9566 46 1 14.4242 -3.3783 -2.2062 47 1 14.2643 -4.3354 -0.6376 48 1 13.2256 -6.2620 -1.9195 49 1 13.3851 -5.3051 -3.4879 50 1 3.9245 -2.0562 -0.6642 51 1 3.9189 -1.5556 1.0430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713040164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:05 Heat of formation + Delta-G solvation = -3.979621 kcal Electronic energy + Delta-G solvation = -29233.697668 eV Core-core repulsion = 25170.167069 eV Total energy + Delta-G solvation = -4063.530598 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.87280 -39.56805 -37.43686 -37.08492 -35.66058 -35.10000 -33.56186 -31.74087 -30.64280 -29.95493 -29.15585 -26.91867 -25.39177 -24.82682 -23.51956 -22.73086 -21.42948 -21.01098 -20.32198 -19.61385 -19.00321 -17.66110 -17.08567 -16.76520 -16.45887 -16.30341 -15.76494 -15.56039 -15.35703 -14.97562 -14.86460 -14.62767 -14.28806 -14.12746 -13.73368 -13.59616 -13.36942 -12.91872 -12.78548 -12.61566 -12.53532 -12.27929 -12.21941 -12.01402 -11.88188 -11.73166 -11.43871 -11.01526 -10.82354 -10.77114 -10.67323 -10.23367 -10.17047 -10.08964 -9.75306 -9.62970 -9.57848 -9.26582 -9.07360 -8.92893 -8.79763 -8.49522 -6.55158 -5.80658 -3.48227 2.35608 2.63960 2.66666 2.94653 3.32368 3.39805 3.39898 3.56503 4.16844 4.26832 4.41040 4.55111 4.66803 4.76956 4.90038 4.93575 4.95211 5.01324 5.03988 5.08503 5.15761 5.16183 5.30573 5.38019 5.49250 5.58027 5.63071 5.72880 5.91006 5.99334 6.00166 6.12165 6.25687 6.27664 6.36104 6.37047 6.42582 6.49437 6.65140 6.65957 6.74978 7.03676 7.07192 7.08327 7.24115 7.59975 7.61423 7.76662 7.86974 8.30820 8.47296 9.12904 9.73776 10.32701 11.13961 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.001984 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.431659 B =14111.085774 C =14818.687561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.610 5.610 3 C 0.121 3.879 4 C 0.033 3.967 5 N -0.514 5.514 6 C 0.034 3.966 7 C 0.506 3.494 8 O -0.525 6.525 9 N -0.726 5.726 10 C 0.122 3.878 11 C -0.145 4.145 12 C 0.154 3.846 13 N -0.551 5.551 14 C -0.262 4.262 15 H 0.063 0.937 16 C 0.015 3.985 17 N -0.881 5.881 18 Si 0.896 3.104 19 H -0.281 1.281 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.120 3.880 23 C -0.196 4.196 24 C -0.222 4.222 25 C 0.034 3.966 26 C 0.527 3.473 27 O -0.549 6.549 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.398 0.602 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.029 0.971 43 H 0.095 0.905 44 H 0.256 0.744 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.092 0.908 50 H 0.136 0.864 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.562 10.593 15.386 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.344 5.344 3 C -0.002 4.002 4 C -0.095 4.095 5 N -0.240 5.240 6 C -0.097 4.097 7 C 0.291 3.709 8 O -0.401 6.401 9 N -0.377 5.377 10 C -0.001 4.001 11 C -0.185 4.185 12 C 0.027 3.973 13 N -0.267 5.267 14 C -0.392 4.392 15 H 0.080 0.920 16 C -0.186 4.186 17 N -0.522 5.522 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.208 1.208 22 C 0.011 3.989 23 C -0.234 4.234 24 C -0.263 4.263 25 C -0.096 4.096 26 C 0.315 3.685 27 O -0.426 6.426 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.232 0.768 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.113 0.887 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.110 0.890 50 H 0.154 0.846 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.546 9.665 14.063 23.769 hybrid contribution 0.991 1.032 0.632 1.564 sum -15.555 10.697 14.695 23.924 Atomic orbital electron populations 1.21739 0.79424 1.04635 1.01212 1.47307 1.07375 1.06231 1.73509 1.21494 0.91331 0.84837 1.02570 1.22573 0.95022 0.96105 0.95777 1.62155 1.03127 1.03435 1.55315 1.22079 0.88360 1.01137 0.98117 1.20369 0.82557 0.83243 0.84733 1.90703 1.59905 1.48630 1.40813 1.46143 1.06893 1.44998 1.39714 1.21458 0.94378 0.91859 0.92452 1.22453 0.91442 1.03321 1.01327 1.20757 0.82690 0.94260 0.99545 1.43333 1.00984 1.37416 1.45007 1.18961 1.10483 1.19023 0.90734 0.91986 1.25259 0.99587 0.98157 0.95581 1.70047 1.38230 1.33637 1.10326 0.86492 0.79097 0.83526 0.78378 1.20669 1.21545 1.20825 1.21233 0.89472 0.93635 0.94514 1.23014 0.98129 1.02472 0.99824 1.23346 1.09974 0.92692 1.00265 1.22544 0.90149 0.94272 1.02605 1.20123 0.90297 0.82950 0.75124 1.90716 1.66741 1.34638 1.50508 0.89146 0.92279 0.92109 0.90556 0.90095 0.93416 0.88150 0.91408 0.87124 0.76808 0.91402 0.91932 0.93176 0.91537 0.95291 0.88699 0.93391 0.89718 0.88518 0.90897 0.91327 0.88989 0.84616 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 10.55 59.85 0.63 1.19 16 2 N -0.61 -5.75 3.23 -182.47 -0.59 -6.34 16 3 C 0.12 0.73 6.64 -4.31 -0.03 0.70 16 4 C 0.03 0.19 5.60 -3.67 -0.02 0.17 16 5 N -0.51 -4.88 4.47 -237.54 -1.06 -5.94 16 6 C 0.03 0.28 5.44 -4.98 -0.03 0.25 16 7 C 0.51 6.45 7.59 -10.99 -0.08 6.37 16 8 O -0.52 -9.04 14.31 5.55 0.08 -8.96 16 9 N -0.73 -8.85 5.56 -60.30 -0.33 -9.19 16 10 C 0.12 1.90 5.67 -4.04 -0.02 1.87 16 11 C -0.15 -2.49 5.65 -26.73 -0.15 -2.64 16 12 C 0.15 3.35 5.33 -4.04 -0.02 3.33 16 13 N -0.55 -12.96 2.75 -165.67 -0.46 -13.42 16 14 C -0.26 -6.77 8.47 -15.06 -0.13 -6.90 16 15 H 0.06 1.61 6.75 -52.49 -0.35 1.26 16 16 C 0.02 0.41 4.98 -17.43 -0.09 0.32 16 17 N -0.88 -24.55 11.50 55.49 0.64 -23.91 16 18 Si 0.90 20.84 29.60 -169.99 -5.03 15.80 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.12 2.51 6.56 -67.94 -0.45 2.06 16 23 C -0.20 -3.81 9.80 -26.73 -0.26 -4.07 16 24 C -0.22 -4.52 10.36 -26.73 -0.28 -4.79 16 25 C 0.03 0.39 5.14 -5.19 -0.03 0.36 16 26 C 0.53 6.67 7.57 -11.67 -0.09 6.58 16 27 O -0.55 -8.94 16.07 5.56 0.09 -8.85 16 28 H 0.09 0.88 6.67 -51.93 -0.35 0.53 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.28 8.13 -51.93 -0.42 -0.14 16 33 H 0.05 0.24 8.08 -51.93 -0.42 -0.18 16 34 H 0.10 0.36 7.91 -51.93 -0.41 -0.05 16 35 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 36 H 0.11 0.65 7.93 -51.93 -0.41 0.24 16 37 H 0.40 3.72 8.47 -40.82 -0.35 3.37 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 43 H 0.10 2.37 5.59 -51.93 -0.29 2.08 16 44 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 45 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 46 H 0.10 2.05 6.46 -51.93 -0.34 1.72 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 48 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 50 H 0.14 1.97 6.01 -51.93 -0.31 1.66 16 51 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 LS Contribution 408.21 15.07 6.15 6.15 Total: -1.00 -33.78 408.21 -10.24 -44.02 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -8.69 Total: 5.82 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.04 Total: 4.81 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -1.80 Total: -58.80 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.17 Total: -17.81 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.78 -10.24 -44.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713040164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.038 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds