Wall clock time and date at job start Tue Mar 31 2020 22:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46001 * 118.53448 * 2 1 4 4 C 1.53001 * 110.03960 * 161.86444 * 3 2 1 5 5 N 1.47189 * 108.71707 * 50.30100 * 4 3 2 6 6 C 1.46898 * 111.00187 * 167.62383 * 5 4 3 7 7 C 1.50700 * 109.47366 * 188.94164 * 6 5 4 8 8 O 1.21287 * 120.00071 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00343 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00310 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47338 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47335 * 179.97438 * 11 10 9 13 13 N 1.46505 * 109.46926 * 180.02562 * 12 11 10 14 14 C 1.36938 * 119.99704 * 269.99524 * 13 12 11 15 15 H 1.08002 * 119.99492 * 140.53695 * 14 13 12 16 16 C 1.38810 * 120.00117 * 320.54009 * 14 13 12 17 17 N 1.31616 * 119.99886 * 340.28455 * 16 14 13 18 18 Si 1.86801 * 119.99835 * 160.28420 * 16 14 13 19 19 H 1.48501 * 109.46852 * 59.99981 * 18 16 14 20 20 H 1.48497 * 109.47146 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47493 * 300.00116 * 18 16 14 22 22 C 1.46500 * 120.00058 * 90.00296 * 13 12 11 23 23 C 1.52994 * 117.49555 * 183.28572 * 22 13 12 24 24 C 1.52992 * 117.49879 * 114.66132 * 22 13 12 25 25 C 1.46903 * 110.17769 * 290.99254 * 5 4 3 26 26 C 1.33715 * 118.53237 * 180.02562 * 2 1 3 27 27 O 1.21280 * 118.62591 * 1.66201 * 26 2 1 28 28 H 1.09001 * 109.47474 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47292 * 299.97993 * 1 2 3 30 30 H 1.08999 * 109.47092 * 59.97332 * 1 2 3 31 31 H 1.08995 * 109.38146 * 282.03534 * 3 2 1 32 32 H 1.09007 * 109.37988 * 41.80911 * 3 2 1 33 33 H 1.09001 * 109.60725 * 290.53060 * 4 3 2 34 34 H 1.08995 * 109.59481 * 170.06995 * 4 3 2 35 35 H 1.08991 * 109.47274 * 68.94045 * 6 5 4 36 36 H 1.09006 * 109.46858 * 308.94034 * 6 5 4 37 37 H 0.97006 * 119.99231 * 0.02562 * 9 7 6 38 38 H 1.08991 * 109.47130 * 59.99974 * 10 9 7 39 39 H 1.09006 * 109.46949 * 299.99994 * 10 9 7 40 40 H 1.09003 * 109.46950 * 59.99725 * 11 10 9 41 41 H 1.09003 * 109.47157 * 300.00061 * 11 10 9 42 42 H 1.08998 * 109.46829 * 299.99539 * 12 11 10 43 43 H 1.08991 * 109.47019 * 59.99675 * 12 11 10 44 44 H 0.97005 * 119.99516 * 175.01509 * 17 16 14 45 45 H 1.09005 * 115.54906 * 328.99215 * 22 13 12 46 46 H 1.09000 * 117.50468 * 359.97438 * 23 22 13 47 47 H 1.09007 * 117.50001 * 145.02081 * 23 22 13 48 48 H 1.08999 * 117.50146 * 214.97496 * 24 22 13 49 49 H 1.08998 * 117.50173 * 359.97438 * 24 22 13 50 50 H 1.08999 * 109.38821 * 170.44906 * 25 5 4 51 51 H 1.09000 * 109.38283 * 290.24408 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1624 1.2827 0.0000 4 6 3.6129 1.0908 0.4474 5 7 4.2091 -0.0014 -0.3388 6 6 5.6675 -0.0388 -0.1666 7 6 6.2641 -1.0167 -1.1457 8 8 5.5453 -1.6226 -1.9120 9 7 7.5966 -1.2174 -1.1706 10 6 8.1767 -2.1676 -2.1229 11 6 9.6956 -2.2066 -1.9434 12 6 10.3013 -3.1996 -2.9374 13 7 11.7557 -3.2373 -2.7651 14 6 12.5524 -2.3851 -3.4822 15 1 13.4108 -1.9262 -3.0141 16 6 12.2568 -2.1111 -4.8105 17 7 11.4823 -2.9267 -5.4940 18 14 12.9582 -0.5848 -5.6277 19 1 14.4417 -0.6433 -5.5950 20 1 12.4968 -0.5220 -7.0378 21 1 12.4943 0.6238 -4.9003 22 6 12.3576 -4.1868 -1.8258 23 6 13.8742 -4.1251 -1.6335 24 6 13.2477 -5.2872 -2.4067 25 6 3.6018 -1.2855 0.0357 26 6 2.1037 -1.1747 -0.0005 27 8 1.4464 -2.1935 -0.0319 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5135 0.8901 30 1 -0.3633 0.5142 -0.8897 31 1 2.1469 1.7028 -1.0056 32 1 1.6619 1.9666 0.6855 33 1 3.6382 0.8346 1.5066 34 1 4.1724 2.0107 0.2781 35 1 5.9054 -0.3516 0.8500 36 1 6.0802 0.9538 -0.3473 37 1 8.1716 -0.7325 -0.5580 38 1 7.9385 -1.8546 -3.1393 39 1 7.7642 -3.1604 -1.9424 40 1 9.9334 -2.5200 -0.9268 41 1 10.1084 -1.2140 -2.1235 42 1 9.8885 -4.1920 -2.7567 43 1 10.0635 -2.8867 -3.9540 44 1 11.2168 -2.6989 -6.3988 45 1 11.7496 -4.4378 -0.9566 46 1 14.4242 -3.3783 -2.2062 47 1 14.2643 -4.3354 -0.6376 48 1 13.2256 -6.2620 -1.9195 49 1 13.3851 -5.3051 -3.4879 50 1 3.9245 -2.0562 -0.6642 51 1 3.9189 -1.5556 1.0430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713040164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:04 Heat of formation + Delta-G solvation = -29.043731 kcal Electronic energy + Delta-G solvation = -29234.784529 eV Core-core repulsion = 25170.167069 eV Total energy + Delta-G solvation = -4064.617460 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.67912 -40.59231 -38.84870 -38.19440 -36.69896 -36.14063 -35.20811 -33.38298 -31.58064 -30.96236 -30.29313 -27.85838 -26.79923 -25.78644 -24.87234 -23.54976 -23.01100 -22.44682 -21.59993 -21.17349 -19.70276 -18.49585 -18.24509 -17.83137 -17.61500 -17.28503 -17.10092 -16.75328 -16.62524 -16.32313 -15.91721 -15.68955 -15.56573 -15.11519 -15.00653 -14.59063 -14.36683 -14.17538 -13.89311 -13.67422 -13.51973 -13.48978 -13.27226 -13.12043 -12.87906 -12.77223 -12.60226 -12.53307 -12.40857 -12.30586 -12.24993 -12.02747 -11.84345 -11.40325 -11.26743 -11.10011 -10.89887 -10.73546 -10.46230 -10.03943 -9.78356 -9.48574 -8.47724 -7.76521 -5.49368 1.43688 1.46351 1.47986 1.54720 1.69965 1.95704 2.10721 2.50193 2.78598 3.17777 3.42515 3.47931 3.53844 3.79820 3.82341 4.03015 4.20177 4.25272 4.28153 4.33130 4.34339 4.39440 4.43083 4.48874 4.54974 4.58093 4.62141 4.62720 4.64892 4.75166 4.78722 4.91560 4.96157 4.98170 5.00004 5.09442 5.15631 5.33941 5.38571 5.49605 5.52431 5.57417 5.61293 5.69568 5.84366 5.85697 6.30889 6.48413 6.66889 7.00783 7.18008 7.36061 7.86540 8.38940 9.12258 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.001984 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.431659 B =14111.085774 C =14818.687561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.113 3.887 4 C 0.034 3.966 5 N -0.535 5.535 6 C 0.044 3.956 7 C 0.500 3.500 8 O -0.577 6.577 9 N -0.715 5.715 10 C 0.135 3.865 11 C -0.119 4.119 12 C 0.153 3.847 13 N -0.567 5.567 14 C -0.258 4.258 15 H 0.061 0.939 16 C -0.036 4.036 17 N -0.916 5.916 18 Si 0.953 3.047 19 H -0.277 1.277 20 H -0.298 1.298 21 H -0.272 1.272 22 C 0.103 3.897 23 C -0.178 4.178 24 C -0.225 4.225 25 C 0.042 3.958 26 C 0.515 3.485 27 O -0.602 6.602 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.063 0.937 34 H 0.132 0.868 35 H 0.100 0.900 36 H 0.145 0.855 37 H 0.416 0.584 38 H 0.040 0.960 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.027 0.973 43 H 0.058 0.942 44 H 0.249 0.751 45 H 0.115 0.885 46 H 0.074 0.926 47 H 0.112 0.888 48 H 0.099 0.901 49 H 0.050 0.950 50 H 0.097 0.903 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.171 13.404 18.676 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.338 5.338 3 C -0.009 4.009 4 C -0.093 4.093 5 N -0.262 5.262 6 C -0.086 4.086 7 C 0.287 3.713 8 O -0.456 6.456 9 N -0.368 5.368 10 C 0.010 3.990 11 C -0.159 4.159 12 C 0.026 3.974 13 N -0.285 5.285 14 C -0.389 4.389 15 H 0.078 0.922 16 C -0.234 4.234 17 N -0.559 5.559 18 Si 0.781 3.219 19 H -0.203 1.203 20 H -0.225 1.225 21 H -0.198 1.198 22 C -0.005 4.005 23 C -0.216 4.216 24 C -0.266 4.266 25 C -0.088 4.088 26 C 0.304 3.696 27 O -0.484 6.484 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.163 0.837 37 H 0.253 0.747 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.132 0.868 46 H 0.092 0.908 47 H 0.130 0.870 48 H 0.117 0.883 49 H 0.069 0.931 50 H 0.115 0.885 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.128 12.557 17.409 26.849 hybrid contribution 0.860 0.144 -0.372 0.948 sum -15.268 12.701 17.037 26.166 Atomic orbital electron populations 1.21862 0.78619 1.03505 1.03346 1.47502 1.08231 1.06568 1.71510 1.21845 0.91895 0.83488 1.03680 1.22753 0.94703 0.95835 0.95998 1.62074 1.03894 1.03227 1.57004 1.22133 0.87440 1.01167 0.97854 1.21333 0.82018 0.83182 0.84745 1.90701 1.61018 1.50742 1.43161 1.45936 1.07347 1.44357 1.39160 1.21036 0.93499 0.92385 0.92045 1.22062 0.91808 1.01210 1.00865 1.20667 0.82454 0.95288 0.98962 1.43547 1.01469 1.38097 1.45376 1.19149 1.10162 1.18838 0.90721 0.92192 1.25930 1.00498 1.00633 0.96298 1.70192 1.40231 1.35203 1.10278 0.85581 0.78433 0.80915 0.76977 1.20294 1.22460 1.19783 1.21575 0.90715 0.93387 0.94839 1.23016 0.96741 1.00784 1.01101 1.23264 1.10529 0.94582 0.98247 1.22268 0.89500 0.94763 1.02305 1.20437 0.90871 0.83315 0.74947 1.90680 1.67797 1.36598 1.53279 0.91934 0.89279 0.90702 0.90642 0.86469 0.91926 0.85009 0.88199 0.83714 0.74679 0.94186 0.92714 0.90971 0.92472 0.95477 0.92361 0.94159 0.86780 0.90770 0.86970 0.88264 0.93093 0.88527 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 10.55 127.77 1.35 2.33 16 2 N -0.61 -10.62 3.23 -850.20 -2.74 -13.36 16 3 C 0.11 0.98 6.64 86.47 0.57 1.56 16 4 C 0.03 0.25 5.60 86.25 0.48 0.74 16 5 N -0.54 -8.91 4.47 -905.44 -4.05 -12.96 16 6 C 0.04 0.57 5.44 85.56 0.47 1.04 16 7 C 0.50 12.21 7.59 87.66 0.67 12.87 16 8 O -0.58 -20.52 14.31 -3.05 -0.04 -20.57 16 9 N -0.71 -16.41 5.56 -463.07 -2.57 -18.98 16 10 C 0.14 4.25 5.67 86.38 0.49 4.74 16 11 C -0.12 -4.02 5.65 30.59 0.17 -3.85 16 12 C 0.15 6.76 5.33 86.38 0.46 7.22 16 13 N -0.57 -26.74 2.75 -678.05 -1.86 -28.60 16 14 C -0.26 -13.44 8.47 84.03 0.71 -12.73 16 15 H 0.06 3.11 6.75 -2.91 -0.02 3.09 16 16 C -0.04 -1.94 4.98 84.86 0.42 -1.52 16 17 N -0.92 -53.10 11.50 21.65 0.25 -52.86 16 18 Si 0.95 43.53 29.60 68.60 2.03 45.56 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 C 0.10 4.12 6.56 44.99 0.30 4.42 16 23 C -0.18 -6.54 9.80 30.59 0.30 -6.24 16 24 C -0.23 -8.96 10.36 30.59 0.32 -8.64 16 25 C 0.04 0.95 5.14 85.42 0.44 1.39 16 26 C 0.52 13.27 7.57 87.68 0.66 13.93 16 27 O -0.60 -20.86 16.07 -3.03 -0.05 -20.91 16 28 H 0.06 1.27 6.67 -2.39 -0.02 1.25 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.12 0.23 8.13 -2.38 -0.02 0.21 16 33 H 0.06 0.33 8.08 -2.39 -0.02 0.31 16 34 H 0.13 0.20 7.91 -2.39 -0.02 0.18 16 35 H 0.10 0.73 8.05 -2.39 -0.02 0.71 16 36 H 0.15 0.95 7.93 -2.38 -0.02 0.94 16 37 H 0.42 6.53 8.47 -92.70 -0.79 5.75 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 42 H 0.03 1.17 8.07 -2.39 -0.02 1.15 16 43 H 0.06 3.06 5.59 -2.39 -0.01 3.04 16 44 H 0.25 14.17 8.32 -92.70 -0.77 13.40 16 45 H 0.11 3.89 8.14 -2.38 -0.02 3.87 16 46 H 0.07 3.07 6.46 -2.39 -0.02 3.06 16 47 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 48 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 49 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 50 H 0.10 2.99 6.01 -2.39 -0.01 2.98 16 51 H 0.08 1.52 8.05 -2.39 -0.02 1.51 16 Total: -1.00 -80.40 408.21 -1.09 -81.49 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.14 Total: 23.94 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 7.81 Total: 17.26 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -10.98 Total: -126.77 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -0.09 Total: -41.48 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -80.40 -1.09 -81.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713040164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.445 kcal (2) G-P(sol) polarization free energy of solvation -80.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds