Wall clock time and date at job start Tue Mar 31 2020 22:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48557 * 110.99833 * 2 1 4 4 C 1.54381 * 104.59332 * 200.95784 * 3 2 1 5 5 C 1.54263 * 105.05947 * 23.85574 * 4 3 2 6 6 H 1.09003 * 110.31933 * 241.00140 * 5 4 3 7 7 C 1.50700 * 110.32693 * 118.89514 * 5 4 3 8 8 O 1.21283 * 119.99544 * 1.42434 * 7 5 4 9 9 N 1.34774 * 119.99981 * 181.42266 * 7 5 4 10 10 C 1.46502 * 119.99846 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47213 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46671 * 295.00149 * 11 10 9 13 13 N 1.46899 * 109.46877 * 55.00021 * 11 10 9 14 14 C 1.46901 * 110.99811 * 204.93991 * 13 11 10 15 15 C 1.50698 * 109.47137 * 174.68138 * 14 13 11 16 16 O 1.21294 * 120.00049 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00194 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00261 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99677 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00352 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00418 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99759 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47033 * 89.99556 * 22 20 18 24 24 H 1.48495 * 109.46870 * 209.99577 * 22 20 18 25 25 H 1.48503 * 109.46973 * 329.99773 * 22 20 18 26 26 C 1.52999 * 109.47330 * 175.00130 * 11 10 9 27 27 C 1.52998 * 117.50008 * 132.52871 * 26 11 10 28 28 C 1.53003 * 117.49766 * 63.90445 * 26 11 10 29 29 C 1.48726 * 111.01434 * 244.49058 * 2 1 3 30 30 H 1.09003 * 109.46785 * 60.13040 * 1 2 3 31 31 H 1.09003 * 109.47034 * 180.12361 * 1 2 3 32 32 H 1.08993 * 109.47085 * 300.12944 * 1 2 3 33 33 H 1.08995 * 110.41196 * 82.18068 * 3 2 1 34 34 H 1.09001 * 110.51147 * 319.78591 * 3 2 1 35 35 H 1.09003 * 110.32606 * 264.95741 * 4 3 2 36 36 H 1.09004 * 110.41164 * 142.79373 * 4 3 2 37 37 H 0.96991 * 120.00202 * 0.02562 * 9 7 5 38 38 H 1.09000 * 109.47122 * 300.00254 * 10 9 7 39 39 H 1.09001 * 109.46955 * 60.00248 * 10 9 7 40 40 H 1.00896 * 111.00141 * 80.99004 * 13 11 10 41 41 H 1.08995 * 109.47655 * 294.68496 * 14 13 11 42 42 H 1.09003 * 109.47155 * 54.68522 * 14 13 11 43 43 H 0.96997 * 119.99789 * 0.02562 * 17 15 14 44 44 H 0.96995 * 120.00072 * 179.97438 * 21 20 18 45 45 H 1.09004 * 115.54865 * 278.24022 * 26 11 10 46 46 H 1.08995 * 117.49633 * 359.97438 * 27 26 11 47 47 H 1.08998 * 117.49796 * 145.02334 * 27 26 11 48 48 H 1.08996 * 117.49689 * 214.98235 * 28 26 11 49 49 H 1.08992 * 117.49835 * 0.02562 * 28 26 11 50 50 H 1.08995 * 110.38801 * 40.24273 * 29 2 1 51 51 H 1.08996 * 110.50306 * 277.75157 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3585 6 1 4.1497 -0.7686 -0.9361 7 6 3.7895 0.2355 -2.7964 8 8 4.0435 1.3698 -3.1424 9 7 3.8169 -0.7662 -3.6976 10 6 4.1529 -0.4847 -5.0956 11 6 4.1122 -1.7845 -5.9016 12 1 4.8935 -2.4566 -5.5468 13 7 2.8011 -2.4250 -5.7318 14 6 2.8895 -3.8737 -5.9587 15 6 1.5603 -4.5127 -5.6494 16 8 0.6305 -3.8285 -5.2771 17 7 1.4042 -5.8443 -5.7875 18 6 0.1948 -6.4255 -5.5067 19 1 -0.6331 -5.8163 -5.1752 20 6 0.0337 -7.7982 -5.6496 21 7 -1.1254 -8.3555 -5.3799 22 14 1.4655 -8.8518 -6.2236 23 1 2.2420 -9.3159 -5.0460 24 1 0.9476 -10.0269 -6.9694 25 1 2.3451 -8.0502 -7.1119 26 6 4.3401 -1.4739 -7.3823 27 6 5.3567 -2.3336 -8.1361 28 6 5.6949 -0.8845 -7.7800 29 6 2.0024 -0.5979 -1.2530 30 1 -0.3633 0.5118 -0.8912 31 1 -0.3633 -1.0277 0.0022 32 1 -0.3633 0.5158 0.8888 33 1 2.0079 1.7916 1.0120 34 1 1.4104 2.0229 -0.6591 35 1 4.1484 1.1748 0.2935 36 1 3.6955 2.0993 -1.1695 37 1 3.6135 -1.6732 -3.4210 38 1 3.4315 0.2208 -5.5077 39 1 5.1531 -0.0547 -5.1493 40 1 2.1125 -2.0054 -6.3383 41 1 3.1503 -4.0632 -6.9999 42 1 3.6560 -4.2970 -5.3094 43 1 2.1477 -6.3913 -6.0856 44 1 -1.2379 -9.3137 -5.4800 45 1 3.4624 -1.1336 -7.9318 46 1 5.8634 -3.1201 -7.5771 47 1 5.1479 -2.5592 -9.1818 48 1 5.7085 -0.1568 -8.5914 49 1 6.4238 -0.7184 -6.9869 50 1 1.4106 -0.2753 -2.1095 51 1 2.0108 -1.6856 -1.1835 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713124745.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:52 Heat of formation + Delta-G solvation = -35.682747 kcal Electronic energy + Delta-G solvation = -29894.086321 eV Core-core repulsion = 25829.180972 eV Total energy + Delta-G solvation = -4064.905349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.33415 -39.11099 -38.18917 -37.82008 -35.25465 -34.20749 -33.63621 -32.40622 -31.69890 -29.97663 -28.74059 -26.43618 -25.83711 -24.09484 -23.19349 -22.63688 -21.82197 -21.25723 -20.81780 -19.68609 -19.37713 -18.38414 -17.46395 -16.65780 -16.23995 -16.02448 -15.63466 -15.40280 -15.19082 -14.92084 -14.82576 -14.49358 -14.22387 -14.13788 -13.77107 -13.58341 -13.19737 -13.11518 -12.81237 -12.62001 -12.50939 -12.36101 -11.90475 -11.83775 -11.77950 -11.68850 -11.62018 -11.50524 -11.40299 -11.26386 -11.19705 -10.85558 -10.74393 -10.63715 -10.30385 -10.01457 -9.83828 -9.61062 -9.02766 -8.69739 -8.65889 -8.25419 -8.20867 -6.34784 -3.86404 2.61264 2.98427 3.03061 3.11262 3.11966 3.53633 3.69681 3.90705 3.94627 4.06575 4.41442 4.42496 4.49150 4.62270 4.71590 4.77430 4.84995 4.95326 5.02823 5.10988 5.18003 5.18618 5.24633 5.29053 5.35706 5.38087 5.39851 5.53766 5.55051 5.60695 5.64319 5.71470 5.74749 5.78635 5.82808 5.83260 5.84233 5.86478 5.93301 5.95876 5.98374 6.45496 6.63279 6.81516 6.94487 7.41317 7.53924 7.56600 8.10474 8.23275 8.55697 8.91332 9.38533 9.78637 10.78315 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008255 B = 0.003253 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3391.147187 B = 8605.360382 C =11467.978709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.515 5.515 3 C 0.030 3.970 4 C -0.115 4.115 5 C -0.114 4.114 6 H 0.105 0.895 7 C 0.519 3.481 8 O -0.550 6.550 9 N -0.710 5.710 10 C 0.137 3.863 11 C 0.105 3.895 12 H 0.084 0.916 13 N -0.657 5.657 14 C 0.048 3.952 15 C 0.449 3.551 16 O -0.563 6.563 17 N -0.590 5.590 18 C -0.305 4.305 19 H 0.119 0.881 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.183 4.183 27 C -0.175 4.175 28 C -0.173 4.173 29 C 0.043 3.957 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.410 0.590 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.354 0.646 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.054 0.946 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.599 14.578 2.611 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.239 5.239 3 C -0.097 4.097 4 C -0.154 4.154 5 C -0.136 4.136 6 H 0.123 0.877 7 C 0.304 3.696 8 O -0.428 6.428 9 N -0.361 5.361 10 C 0.013 3.987 11 C -0.006 4.006 12 H 0.102 0.898 13 N -0.288 5.288 14 C -0.085 4.085 15 C 0.235 3.765 16 O -0.445 6.445 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.204 4.204 27 C -0.212 4.212 28 C -0.211 4.211 29 C -0.085 4.085 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.246 0.754 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.174 0.826 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.202 0.798 44 H 0.084 0.916 45 H 0.126 0.874 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.112 0.888 49 H 0.114 0.886 50 H 0.072 0.928 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.182 15.277 3.793 21.187 hybrid contribution 0.643 -1.218 -2.204 2.599 sum 14.825 14.059 1.589 20.493 Atomic orbital electron populations 1.22529 0.87541 1.02821 1.00807 1.65432 1.08639 1.15193 1.34599 1.23152 0.95244 0.90279 1.01074 1.22321 0.96613 0.97229 0.99192 1.22036 0.98940 1.00052 0.92553 0.87682 1.20457 0.76548 0.84868 0.87686 1.90648 1.49817 1.21662 1.80688 1.45810 1.69999 1.11673 1.08609 1.21222 1.00595 0.96219 0.80700 1.21469 0.92813 0.95332 0.91031 0.89761 1.60179 1.05852 1.02403 1.60373 1.21747 0.97749 0.88985 1.00042 1.19699 0.89555 0.82617 0.84633 1.90575 1.42046 1.61924 1.49942 1.42208 1.12969 1.06566 1.61247 1.19416 0.89386 0.91976 1.42616 0.86311 1.25038 0.96827 0.96567 0.97694 1.69615 1.22788 1.11876 1.47780 0.86679 0.82329 0.81063 0.79335 1.19588 1.20212 1.19563 1.23141 0.94528 1.05780 0.96935 1.23003 1.02909 0.94192 1.01107 1.22898 0.98223 0.96453 1.03524 1.23123 0.92680 1.00964 0.91773 0.95110 0.90707 0.91282 0.90008 0.93700 0.90673 0.88873 0.75369 0.91520 0.91341 0.82575 0.93343 0.89643 0.79755 0.91590 0.87374 0.88682 0.88746 0.88764 0.88606 0.92777 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.53 60.07 0.57 0.70 16 2 N -0.51 -5.90 5.66 -238.09 -1.35 -7.24 16 3 C 0.03 0.31 6.49 -2.18 -0.01 0.30 16 4 C -0.12 -1.19 6.59 -25.35 -0.17 -1.36 16 5 C -0.11 -1.22 3.44 -90.39 -0.31 -1.54 16 6 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 7 C 0.52 6.55 7.02 -10.99 -0.08 6.48 16 8 O -0.55 -8.62 15.25 5.56 0.08 -8.53 16 9 N -0.71 -8.07 5.34 -60.29 -0.32 -8.39 16 10 C 0.14 1.48 5.19 -4.04 -0.02 1.46 16 11 C 0.10 1.04 2.33 -67.71 -0.16 0.88 16 12 H 0.08 0.79 7.50 -51.93 -0.39 0.40 16 13 N -0.66 -8.56 5.22 -107.99 -0.56 -9.13 16 14 C 0.05 0.69 5.99 -4.98 -0.03 0.66 16 15 C 0.45 9.48 7.83 -10.99 -0.09 9.39 16 16 O -0.56 -14.25 15.89 5.55 0.09 -14.16 16 17 N -0.59 -13.38 5.09 -10.96 -0.06 -13.43 16 18 C -0.31 -8.38 10.16 -14.94 -0.15 -8.53 16 19 H 0.12 3.75 7.39 -52.48 -0.39 3.37 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.29 13.96 55.50 0.77 -24.51 16 22 Si 0.88 18.84 27.74 -169.99 -4.71 14.13 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 26 C -0.18 -1.65 5.08 -90.62 -0.46 -2.11 16 27 C -0.18 -1.45 10.18 -26.73 -0.27 -1.72 16 28 C -0.17 -1.35 9.86 -26.73 -0.26 -1.61 16 29 C 0.04 0.50 6.01 -2.09 -0.01 0.49 16 30 H 0.03 0.33 7.98 -51.93 -0.41 -0.08 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.48 7.98 -51.93 -0.41 0.07 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.09 6.46 -51.93 -0.34 0.76 16 37 H 0.41 4.53 8.14 -40.82 -0.33 4.20 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.71 7.74 -51.93 -0.40 0.31 16 40 H 0.35 5.02 8.26 -39.29 -0.32 4.70 16 41 H 0.05 0.64 8.10 -51.93 -0.42 0.21 16 42 H 0.09 1.08 7.92 -51.93 -0.41 0.66 16 43 H 0.37 7.35 5.76 -40.82 -0.24 7.11 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.11 1.03 7.98 -51.93 -0.41 0.61 16 46 H 0.09 0.76 8.07 -51.93 -0.42 0.34 16 47 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 0.71 7.91 -51.93 -0.41 0.29 16 50 H 0.05 0.72 7.62 -51.93 -0.40 0.32 16 51 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 412.49 15.07 6.22 6.22 Total: -1.00 -32.69 412.49 -10.07 -42.75 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -8.68 Total: 17.80 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.55 Total: 4.50 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -1.51 Total: -62.71 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.17 Total: -22.69 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.71 Total: 14.13 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.69 -10.07 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713124745.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.072 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds