Wall clock time and date at job start Tue Mar 31 2020 22:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48557 * 110.99833 * 2 1 4 4 C 1.54381 * 104.59332 * 200.95784 * 3 2 1 5 5 C 1.54263 * 105.05947 * 23.85574 * 4 3 2 6 6 H 1.09003 * 110.31933 * 241.00140 * 5 4 3 7 7 C 1.50700 * 110.32693 * 118.89514 * 5 4 3 8 8 O 1.21283 * 119.99544 * 1.42434 * 7 5 4 9 9 N 1.34774 * 119.99981 * 181.42266 * 7 5 4 10 10 C 1.46502 * 119.99846 * 179.97438 * 9 7 5 11 11 C 1.53000 * 109.47213 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46671 * 295.00149 * 11 10 9 13 13 N 1.46899 * 109.46877 * 55.00021 * 11 10 9 14 14 C 1.46901 * 110.99811 * 204.93991 * 13 11 10 15 15 C 1.50698 * 109.47137 * 174.68138 * 14 13 11 16 16 O 1.21294 * 120.00049 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00194 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00261 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99677 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00352 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00418 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99759 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47033 * 89.99556 * 22 20 18 24 24 H 1.48495 * 109.46870 * 209.99577 * 22 20 18 25 25 H 1.48503 * 109.46973 * 329.99773 * 22 20 18 26 26 C 1.52999 * 109.47330 * 175.00130 * 11 10 9 27 27 C 1.52998 * 117.50008 * 132.52871 * 26 11 10 28 28 C 1.53003 * 117.49766 * 63.90445 * 26 11 10 29 29 C 1.48726 * 111.01434 * 244.49058 * 2 1 3 30 30 H 1.09003 * 109.46785 * 60.13040 * 1 2 3 31 31 H 1.09003 * 109.47034 * 180.12361 * 1 2 3 32 32 H 1.08993 * 109.47085 * 300.12944 * 1 2 3 33 33 H 1.08995 * 110.41196 * 82.18068 * 3 2 1 34 34 H 1.09001 * 110.51147 * 319.78591 * 3 2 1 35 35 H 1.09003 * 110.32606 * 264.95741 * 4 3 2 36 36 H 1.09004 * 110.41164 * 142.79373 * 4 3 2 37 37 H 0.96991 * 120.00202 * 0.02562 * 9 7 5 38 38 H 1.09000 * 109.47122 * 300.00254 * 10 9 7 39 39 H 1.09001 * 109.46955 * 60.00248 * 10 9 7 40 40 H 1.00896 * 111.00141 * 80.99004 * 13 11 10 41 41 H 1.08995 * 109.47655 * 294.68496 * 14 13 11 42 42 H 1.09003 * 109.47155 * 54.68522 * 14 13 11 43 43 H 0.96997 * 119.99789 * 0.02562 * 17 15 14 44 44 H 0.96995 * 120.00072 * 179.97438 * 21 20 18 45 45 H 1.09004 * 115.54865 * 278.24022 * 26 11 10 46 46 H 1.08995 * 117.49633 * 359.97438 * 27 26 11 47 47 H 1.08998 * 117.49796 * 145.02334 * 27 26 11 48 48 H 1.08996 * 117.49689 * 214.98235 * 28 26 11 49 49 H 1.08992 * 117.49835 * 0.02562 * 28 26 11 50 50 H 1.08995 * 110.38801 * 40.24273 * 29 2 1 51 51 H 1.08996 * 110.50306 * 277.75157 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3585 6 1 4.1497 -0.7686 -0.9361 7 6 3.7895 0.2355 -2.7964 8 8 4.0435 1.3698 -3.1424 9 7 3.8169 -0.7662 -3.6976 10 6 4.1529 -0.4847 -5.0956 11 6 4.1122 -1.7845 -5.9016 12 1 4.8935 -2.4566 -5.5468 13 7 2.8011 -2.4250 -5.7318 14 6 2.8895 -3.8737 -5.9587 15 6 1.5603 -4.5127 -5.6494 16 8 0.6305 -3.8285 -5.2771 17 7 1.4042 -5.8443 -5.7875 18 6 0.1948 -6.4255 -5.5067 19 1 -0.6331 -5.8163 -5.1752 20 6 0.0337 -7.7982 -5.6496 21 7 -1.1254 -8.3555 -5.3799 22 14 1.4655 -8.8518 -6.2236 23 1 2.2420 -9.3159 -5.0460 24 1 0.9476 -10.0269 -6.9694 25 1 2.3451 -8.0502 -7.1119 26 6 4.3401 -1.4739 -7.3823 27 6 5.3567 -2.3336 -8.1361 28 6 5.6949 -0.8845 -7.7800 29 6 2.0024 -0.5979 -1.2530 30 1 -0.3633 0.5118 -0.8912 31 1 -0.3633 -1.0277 0.0022 32 1 -0.3633 0.5158 0.8888 33 1 2.0079 1.7916 1.0120 34 1 1.4104 2.0229 -0.6591 35 1 4.1484 1.1748 0.2935 36 1 3.6955 2.0993 -1.1695 37 1 3.6135 -1.6732 -3.4210 38 1 3.4315 0.2208 -5.5077 39 1 5.1531 -0.0547 -5.1493 40 1 2.1125 -2.0054 -6.3383 41 1 3.1503 -4.0632 -6.9999 42 1 3.6560 -4.2970 -5.3094 43 1 2.1477 -6.3913 -6.0856 44 1 -1.2379 -9.3137 -5.4800 45 1 3.4624 -1.1336 -7.9318 46 1 5.8634 -3.1201 -7.5771 47 1 5.1479 -2.5592 -9.1818 48 1 5.7085 -0.1568 -8.5914 49 1 6.4238 -0.7184 -6.9869 50 1 1.4106 -0.2753 -2.1095 51 1 2.0108 -1.6856 -1.1835 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713124745.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:51 Heat of formation + Delta-G solvation = -62.603045 kcal Electronic energy + Delta-G solvation = -29895.253673 eV Core-core repulsion = 25829.180972 eV Total energy + Delta-G solvation = -4066.072701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.30202 -40.38108 -39.45063 -38.78347 -36.24240 -35.88999 -34.88011 -33.70376 -33.30392 -30.95269 -29.72548 -27.84093 -26.82664 -25.53428 -24.21582 -23.28368 -22.67930 -22.13032 -21.65689 -21.22790 -20.58775 -20.17859 -18.42787 -17.85473 -17.29245 -17.02532 -16.82192 -16.71365 -16.41450 -16.08115 -15.84788 -15.62305 -15.31545 -15.19667 -14.88691 -14.72583 -14.61628 -14.22420 -14.09016 -14.03351 -13.75063 -13.47503 -13.16302 -12.98121 -12.73552 -12.61032 -12.48401 -12.44385 -12.38603 -12.29084 -12.20548 -12.14161 -11.96777 -11.71514 -11.48021 -11.39953 -11.05283 -10.81912 -10.39363 -10.21230 -10.00643 -9.59210 -9.33904 -8.38747 -5.99228 1.31542 1.37548 1.46018 1.60843 2.01252 2.21344 2.25021 2.69323 2.89281 3.04152 3.18219 3.41132 3.53834 3.60656 3.70420 3.90322 3.94800 4.07300 4.16692 4.20007 4.22063 4.27301 4.36815 4.39828 4.46917 4.48365 4.51831 4.54928 4.59117 4.66482 4.73617 4.83521 4.84918 4.91281 4.94982 4.96609 5.05993 5.10619 5.14339 5.21890 5.29186 5.51226 5.55555 5.73751 5.91597 5.92063 6.04282 6.31487 6.60306 6.62921 6.92207 7.25998 7.44249 8.01761 8.79011 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008255 B = 0.003253 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3391.147187 B = 8605.360382 C =11467.978709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.520 5.520 3 C 0.031 3.969 4 C -0.112 4.112 5 C -0.108 4.108 6 H 0.128 0.872 7 C 0.516 3.484 8 O -0.583 6.583 9 N -0.704 5.704 10 C 0.139 3.861 11 C 0.118 3.882 12 H 0.103 0.897 13 N -0.670 5.670 14 C 0.065 3.935 15 C 0.450 3.550 16 O -0.612 6.612 17 N -0.592 5.592 18 C -0.325 4.325 19 H 0.054 0.946 20 C -0.016 4.016 21 N -0.937 5.937 22 Si 0.964 3.036 23 H -0.257 1.257 24 H -0.279 1.279 25 H -0.229 1.229 26 C -0.195 4.195 27 C -0.170 4.170 28 C -0.166 4.166 29 C 0.045 3.955 30 H 0.022 0.978 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.035 0.965 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.413 0.587 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.345 0.655 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.389 0.611 44 H 0.278 0.722 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.103 0.897 50 H 0.031 0.969 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.643 13.863 2.156 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.244 5.244 3 C -0.097 4.097 4 C -0.151 4.151 5 C -0.130 4.130 6 H 0.145 0.855 7 C 0.303 3.697 8 O -0.464 6.464 9 N -0.354 5.354 10 C 0.015 3.985 11 C 0.008 3.992 12 H 0.121 0.879 13 N -0.300 5.300 14 C -0.068 4.068 15 C 0.238 3.762 16 O -0.496 6.496 17 N -0.234 5.234 18 C -0.455 4.455 19 H 0.072 0.928 20 C -0.215 4.215 21 N -0.578 5.578 22 Si 0.784 3.216 23 H -0.181 1.181 24 H -0.204 1.204 25 H -0.153 1.153 26 C -0.215 4.215 27 C -0.207 4.207 28 C -0.204 4.204 29 C -0.083 4.083 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.053 0.947 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.250 0.750 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.164 0.836 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.225 0.775 44 H 0.087 0.913 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.122 0.878 50 H 0.049 0.951 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 18.257 14.572 3.328 23.595 hybrid contribution -0.728 -0.853 -2.029 2.319 sum 17.528 13.719 1.299 22.297 Atomic orbital electron populations 1.22555 0.87308 1.02622 1.01278 1.65463 1.08969 1.15901 1.34045 1.23207 0.95025 0.89532 1.01932 1.22308 0.97000 0.96323 0.99420 1.22056 0.98560 1.00809 0.91563 0.85461 1.20775 0.75936 0.84475 0.88521 1.90633 1.51512 1.22937 1.81350 1.45827 1.69208 1.11570 1.08791 1.21250 1.00441 0.96515 0.80342 1.21390 0.91417 0.94717 0.91675 0.87893 1.60133 1.07396 1.01855 1.60660 1.21644 0.93647 0.89234 1.02241 1.21027 0.91457 0.81876 0.81810 1.90561 1.44679 1.63010 1.51361 1.42031 1.11864 1.07427 1.62108 1.18980 0.90029 0.92251 1.44217 0.92791 1.26110 1.00596 0.97687 0.97085 1.69807 1.26066 1.12592 1.49303 0.85375 0.78086 0.78411 0.79695 1.18105 1.20442 1.15269 1.23006 0.94982 1.07434 0.96116 1.23087 1.01901 0.94544 1.01178 1.22961 0.97120 0.96564 1.03713 1.23058 0.93141 1.00915 0.91222 0.95939 0.91276 0.89521 0.88182 0.94659 0.88705 0.90391 0.75005 0.93433 0.90391 0.83591 0.90643 0.86326 0.77541 0.91270 0.88327 0.87656 0.88560 0.88371 0.87831 0.95084 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.53 127.69 1.22 1.45 16 2 N -0.52 -11.66 5.66 -907.17 -5.13 -16.79 16 3 C 0.03 0.61 6.49 86.45 0.56 1.17 16 4 C -0.11 -2.20 6.59 31.49 0.21 -2.00 16 5 C -0.11 -2.22 3.44 -10.64 -0.04 -2.26 16 6 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 7 C 0.52 12.81 7.02 87.66 0.62 13.42 16 8 O -0.58 -18.31 15.25 -3.04 -0.05 -18.36 16 9 N -0.70 -15.30 5.34 -463.06 -2.47 -17.77 16 10 C 0.14 2.82 5.19 86.38 0.45 3.26 16 11 C 0.12 2.05 2.33 44.92 0.10 2.15 16 12 H 0.10 1.46 7.50 -2.39 -0.02 1.45 16 13 N -0.67 -16.38 5.22 -495.58 -2.59 -18.97 16 14 C 0.06 1.67 5.99 85.56 0.51 2.19 16 15 C 0.45 18.75 7.83 87.66 0.69 19.44 16 16 O -0.61 -32.05 15.89 -3.07 -0.05 -32.10 16 17 N -0.59 -26.37 5.09 -306.98 -1.56 -27.93 16 18 C -0.33 -18.52 10.16 84.04 0.85 -17.67 16 19 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 20 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 21 N -0.94 -55.79 13.96 21.66 0.30 -55.49 16 22 Si 0.96 37.55 27.74 68.60 1.90 39.45 16 23 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 24 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 25 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 26 C -0.19 -3.03 5.08 -10.79 -0.05 -3.09 16 27 C -0.17 -2.20 10.18 30.60 0.31 -1.89 16 28 C -0.17 -2.10 9.86 30.60 0.30 -1.80 16 29 C 0.05 1.06 6.01 86.42 0.52 1.58 16 30 H 0.02 0.51 7.98 -2.39 -0.02 0.49 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.04 0.76 7.98 -2.39 -0.02 0.74 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.81 6.46 -2.38 -0.02 1.80 16 37 H 0.41 8.54 8.14 -92.72 -0.75 7.79 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.47 7.74 -2.39 -0.02 1.45 16 40 H 0.35 9.64 8.26 -89.70 -0.74 8.90 16 41 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 42 H 0.12 2.39 7.92 -2.39 -0.02 2.37 16 43 H 0.39 14.17 5.76 -92.71 -0.53 13.64 16 44 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.10 1.75 7.98 -2.39 -0.02 1.73 16 46 H 0.11 1.17 8.07 -2.39 -0.02 1.16 16 47 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.10 1.17 7.91 -2.39 -0.02 1.16 16 50 H 0.03 0.86 7.62 -2.39 -0.02 0.84 16 51 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -77.11 412.49 -4.07 -81.18 By element: Atomic # 1 Polarization: 52.38 SS G_CDS: -1.14 Total: 51.24 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 6.72 Total: 15.54 kcal Atomic # 7 Polarization: -125.50 SS G_CDS: -11.46 Total: -136.96 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -0.10 Total: -50.46 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 1.90 Total: 39.45 kcal Total: -77.11 -4.07 -81.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713124745.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.574 kcal (2) G-P(sol) polarization free energy of solvation -77.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds