Wall clock time and date at job start Tue Mar 31 2020 22:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46844 * 110.99964 * 2 1 4 4 C 1.53037 * 109.52142 * 185.84038 * 3 2 1 5 5 C 1.53120 * 109.27877 * 300.81559 * 4 3 2 6 6 C 1.53121 * 109.15699 * 57.65542 * 5 4 3 7 7 C 1.46845 * 110.99668 * 124.20563 * 2 1 3 8 8 H 1.09003 * 109.46372 * 294.16535 * 7 2 1 9 9 C 1.50700 * 109.46547 * 54.14674 * 7 2 1 10 10 O 1.21284 * 119.99873 * 19.99559 * 9 7 2 11 11 N 1.34774 * 120.00339 * 200.00019 * 9 7 2 12 12 C 1.47290 * 125.79121 * 359.97438 * 11 9 7 13 13 C 1.54325 * 107.30599 * 178.92556 * 12 11 9 14 14 C 1.55154 * 102.94303 * 337.81911 * 13 12 11 15 15 H 1.09008 * 111.00345 * 277.42446 * 14 13 12 16 16 N 1.46901 * 111.03723 * 153.59262 * 14 13 12 17 17 C 1.46892 * 111.00149 * 92.78438 * 16 14 13 18 18 C 1.50702 * 109.47119 * 179.97438 * 17 16 14 19 19 O 1.21291 * 119.99812 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00131 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00134 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99817 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00064 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00004 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99916 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47049 * 60.00103 * 25 23 21 27 27 H 1.48496 * 109.46889 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46849 * 299.99809 * 25 23 21 29 29 C 1.47425 * 125.65138 * 179.97438 * 11 9 7 30 30 H 1.09005 * 109.47038 * 295.79373 * 1 2 3 31 31 H 1.09001 * 109.46947 * 55.79296 * 1 2 3 32 32 H 1.09001 * 109.47475 * 175.79533 * 1 2 3 33 33 H 1.09002 * 109.46056 * 305.84978 * 3 2 1 34 34 H 1.08992 * 109.46568 * 65.83157 * 3 2 1 35 35 H 1.08999 * 109.50799 * 60.75923 * 4 3 2 36 36 H 1.08999 * 109.50156 * 180.87611 * 4 3 2 37 37 H 1.08999 * 109.52660 * 177.55812 * 5 4 3 38 38 H 1.09000 * 109.52127 * 297.69180 * 5 4 3 39 39 H 1.08998 * 109.50188 * 182.40808 * 6 5 4 40 40 H 1.08994 * 109.50389 * 62.29110 * 6 5 4 41 41 H 1.09004 * 109.85762 * 59.50172 * 12 11 9 42 42 H 1.08995 * 110.00297 * 298.43119 * 12 11 9 43 43 H 1.09002 * 110.72180 * 219.45147 * 13 12 11 44 44 H 1.08994 * 110.87038 * 96.25177 * 13 12 11 45 45 H 1.00905 * 110.99623 * 216.73665 * 16 14 13 46 46 H 1.09001 * 109.47396 * 299.99594 * 17 16 14 47 47 H 1.08995 * 109.47545 * 60.00038 * 17 16 14 48 48 H 0.96995 * 119.99772 * 359.97438 * 20 18 17 49 49 H 0.97004 * 120.00096 * 180.02562 * 24 23 21 50 50 H 1.09002 * 110.36696 * 85.25946 * 29 11 9 51 51 H 1.08995 * 110.36608 * 323.04783 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1188 0.5370 1.0144 6 6 3.5181 -0.8714 1.0209 7 6 1.9952 -0.7707 1.1338 8 1 1.7325 -0.2706 2.0660 9 6 1.3982 -2.1543 1.1208 10 8 0.9164 -2.5973 0.0996 11 7 1.3995 -2.8995 2.2437 12 6 1.9480 -2.4908 3.5481 13 6 1.7007 -3.6517 4.5344 14 6 0.5244 -4.4212 3.8773 15 1 -0.4311 -3.9565 4.1211 16 7 0.5343 -5.8362 4.2717 17 6 -0.3105 -6.0596 5.4525 18 6 -0.2760 -7.5192 5.8260 19 8 0.3867 -8.2969 5.1724 20 7 -0.9824 -7.9605 6.8855 21 6 -0.9506 -9.2883 7.2257 22 1 -0.3599 -9.9806 6.6442 23 6 -1.6784 -9.7432 8.3183 24 7 -2.3976 -8.9008 9.0254 25 14 -1.6345 -11.5522 8.7821 26 1 -0.2376 -11.9503 9.0907 27 1 -2.4882 -11.7779 9.9761 28 1 -2.1424 -12.3662 7.6488 29 6 0.8512 -4.2620 2.3715 30 1 -0.3633 0.4472 0.9253 31 1 -0.3633 0.5777 -0.8499 32 1 -0.3634 -1.0249 -0.0753 33 1 1.5635 1.9256 -0.8330 34 1 1.7326 1.8608 0.9375 35 1 3.7814 0.8567 -1.0906 36 1 3.9099 2.3512 -0.1311 37 1 5.1998 0.4713 0.8906 38 1 3.8896 1.0361 1.9559 39 1 3.9098 -1.4302 1.8709 40 1 3.7813 -1.3836 0.0955 41 1 1.4399 -1.5922 3.8983 42 1 3.0177 -2.3009 3.4598 43 1 1.4129 -3.2707 5.5142 44 1 2.5817 -4.2885 4.6134 45 1 0.2482 -6.4271 3.5054 46 1 0.0627 -5.4624 6.2845 47 1 -1.3358 -5.7670 5.2264 48 1 -1.5126 -7.3386 7.4079 49 1 -2.9054 -9.2183 9.7885 50 1 1.5925 -4.9997 2.0642 51 1 -0.0547 -4.3639 1.7739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713148378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:24 Heat of formation + Delta-G solvation = -58.217043 kcal Electronic energy + Delta-G solvation = -29554.386415 eV Core-core repulsion = 25488.503906 eV Total energy + Delta-G solvation = -4065.882509 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.83890 -39.06666 -38.22281 -37.39359 -34.84349 -33.91160 -33.75843 -31.88319 -31.24867 -30.55068 -29.02476 -27.23679 -26.17106 -24.67062 -23.80260 -23.32448 -22.94316 -20.75223 -20.37753 -19.42597 -19.19878 -17.92159 -17.53982 -16.78201 -16.29075 -15.95568 -15.44252 -15.32924 -15.22225 -15.00754 -14.70688 -14.52406 -14.21698 -14.00336 -13.71174 -13.56712 -13.47476 -13.41946 -13.17542 -12.95063 -12.72143 -12.43185 -12.27686 -11.98257 -11.79532 -11.72594 -11.68801 -11.47608 -11.35938 -11.21648 -11.13176 -11.05084 -10.88436 -10.80344 -10.45652 -10.23395 -9.81211 -9.52292 -8.86680 -8.66963 -8.51909 -8.18306 -7.98890 -6.43842 -3.84821 2.37417 2.56331 3.18995 3.24868 3.29294 3.52499 3.87521 4.03204 4.03896 4.25578 4.32520 4.42449 4.48672 4.50055 4.64446 4.69958 4.79586 4.87268 4.99801 5.05822 5.08936 5.11491 5.16332 5.19972 5.24286 5.28823 5.30420 5.33308 5.49489 5.50690 5.59752 5.66839 5.68022 5.69903 5.76895 5.78920 5.80559 5.90611 5.93032 5.99329 6.05806 6.24641 6.57775 6.69115 7.10858 7.27247 7.52942 7.53355 7.96635 8.03536 8.58470 9.15474 9.51379 10.02624 10.73716 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034380 B = 0.001735 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.233277 B =16134.243607 C =16273.605271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.521 5.521 3 C 0.056 3.944 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.108 4.108 7 C 0.076 3.924 8 H 0.060 0.940 9 C 0.533 3.467 10 O -0.520 6.520 11 N -0.616 5.616 12 C 0.099 3.901 13 C -0.122 4.122 14 C 0.073 3.927 15 H 0.061 0.939 16 N -0.655 5.655 17 C 0.052 3.948 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.105 3.895 30 H 0.020 0.980 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.354 0.646 46 H 0.087 0.913 47 H 0.045 0.955 48 H 0.392 0.608 49 H 0.272 0.728 50 H 0.081 0.919 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.652 24.312 -12.250 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.246 5.246 3 C -0.071 4.071 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.036 4.036 8 H 0.078 0.922 9 C 0.320 3.680 10 O -0.396 6.396 11 N -0.352 5.352 12 C -0.024 4.024 13 C -0.161 4.161 14 C -0.038 4.038 15 H 0.079 0.921 16 N -0.289 5.289 17 C -0.081 4.081 18 C 0.225 3.775 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.018 4.018 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.174 0.826 46 H 0.105 0.895 47 H 0.063 0.937 48 H 0.225 0.775 49 H 0.082 0.918 50 H 0.099 0.901 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.434 23.376 -13.218 28.463 hybrid contribution -1.599 0.042 1.202 2.001 sum 7.835 23.418 -12.016 27.462 Atomic orbital electron populations 1.22598 0.86482 1.04279 1.00005 1.61639 1.08350 1.13052 1.41606 1.22145 0.95762 0.88526 1.00690 1.21627 0.94298 1.00274 0.99554 1.21576 1.00324 0.95023 0.98741 1.21562 0.91401 0.98164 1.03514 1.21544 0.96575 0.91739 0.93700 0.92203 1.20096 0.79292 0.86625 0.81968 1.90696 1.45494 1.72490 1.30877 1.48471 1.59828 1.16753 1.10157 1.22209 0.98914 0.98426 0.82837 1.22720 1.00102 0.95610 0.97662 1.22678 0.97659 0.90428 0.93072 0.92117 1.60089 1.56899 1.03172 1.08695 1.21727 0.95100 0.97034 0.94240 1.19766 0.84679 0.88967 0.84076 1.90532 1.45154 1.56832 1.54165 1.41851 1.42225 1.09822 1.26017 1.19660 1.27376 0.84471 1.11490 0.87934 1.25264 0.96245 1.00211 0.96182 1.69601 1.30184 1.35236 1.19281 0.85908 0.78341 0.82039 0.77884 1.19866 1.20978 1.19897 1.22350 0.99734 0.83569 0.96099 0.96175 0.91144 0.89311 0.90246 0.94882 0.90774 0.91259 0.91087 0.91972 0.90801 0.90239 0.91581 0.91019 0.90048 0.88982 0.82580 0.89495 0.93690 0.77463 0.91803 0.90078 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.09 60.07 0.55 0.68 16 2 N -0.52 -5.07 4.51 -236.32 -1.07 -6.14 16 3 C 0.06 0.40 5.46 -3.84 -0.02 0.38 16 4 C -0.12 -0.72 6.09 -26.65 -0.16 -0.88 16 5 C -0.12 -0.69 6.00 -26.61 -0.16 -0.85 16 6 C -0.11 -0.84 5.34 -26.65 -0.14 -0.98 16 7 C 0.08 0.71 1.66 -68.87 -0.11 0.59 16 8 H 0.06 0.49 7.48 -51.93 -0.39 0.10 16 9 C 0.53 6.40 6.29 -10.99 -0.07 6.33 16 10 O -0.52 -8.16 14.78 5.55 0.08 -8.07 16 11 N -0.62 -6.61 3.34 -170.31 -0.57 -7.18 16 12 C 0.10 0.80 6.23 -2.92 -0.02 0.78 16 13 C -0.12 -1.17 6.65 -24.90 -0.17 -1.33 16 14 C 0.07 0.84 3.38 -65.57 -0.22 0.62 16 15 H 0.06 0.68 7.83 -51.92 -0.41 0.27 16 16 N -0.66 -9.90 6.04 -105.73 -0.64 -10.54 16 17 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 18 C 0.44 10.13 7.82 -10.98 -0.09 10.05 16 19 O -0.58 -15.57 15.78 5.55 0.09 -15.48 16 20 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 21 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 25 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 C 0.11 1.23 6.30 -2.53 -0.02 1.22 16 30 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.09 1.08 5.62 -51.93 -0.29 0.79 16 33 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.50 6.66 -51.93 -0.35 0.16 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.45 7.86 -51.93 -0.41 0.04 16 42 H 0.07 0.48 6.74 -51.93 -0.35 0.13 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.35 5.62 8.14 -39.29 -0.32 5.30 16 46 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 48 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 49 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 50 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.08 0.96 8.03 -51.93 -0.42 0.55 16 LS Contribution 400.74 15.07 6.04 6.04 Total: -1.00 -32.83 400.74 -9.99 -42.82 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -8.67 Total: 10.79 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -0.90 Total: 9.49 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -1.61 Total: -61.48 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.17 Total: -23.55 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.83 -9.99 -42.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713148378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.392 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds