Wall clock time and date at job start Tue Mar 31 2020 22:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46844 * 110.99964 * 2 1 4 4 C 1.53037 * 109.52142 * 185.84038 * 3 2 1 5 5 C 1.53120 * 109.27877 * 300.81559 * 4 3 2 6 6 C 1.53121 * 109.15699 * 57.65542 * 5 4 3 7 7 C 1.46845 * 110.99668 * 124.20563 * 2 1 3 8 8 H 1.09003 * 109.46372 * 294.16535 * 7 2 1 9 9 C 1.50700 * 109.46547 * 54.14674 * 7 2 1 10 10 O 1.21284 * 119.99873 * 19.99559 * 9 7 2 11 11 N 1.34774 * 120.00339 * 200.00019 * 9 7 2 12 12 C 1.47290 * 125.79121 * 359.97438 * 11 9 7 13 13 C 1.54325 * 107.30599 * 178.92556 * 12 11 9 14 14 C 1.55154 * 102.94303 * 337.81911 * 13 12 11 15 15 H 1.09008 * 111.00345 * 277.42446 * 14 13 12 16 16 N 1.46901 * 111.03723 * 153.59262 * 14 13 12 17 17 C 1.46892 * 111.00149 * 92.78438 * 16 14 13 18 18 C 1.50702 * 109.47119 * 179.97438 * 17 16 14 19 19 O 1.21291 * 119.99812 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00131 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00134 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99817 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00064 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00004 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99916 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47049 * 60.00103 * 25 23 21 27 27 H 1.48496 * 109.46889 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46849 * 299.99809 * 25 23 21 29 29 C 1.47425 * 125.65138 * 179.97438 * 11 9 7 30 30 H 1.09005 * 109.47038 * 295.79373 * 1 2 3 31 31 H 1.09001 * 109.46947 * 55.79296 * 1 2 3 32 32 H 1.09001 * 109.47475 * 175.79533 * 1 2 3 33 33 H 1.09002 * 109.46056 * 305.84978 * 3 2 1 34 34 H 1.08992 * 109.46568 * 65.83157 * 3 2 1 35 35 H 1.08999 * 109.50799 * 60.75923 * 4 3 2 36 36 H 1.08999 * 109.50156 * 180.87611 * 4 3 2 37 37 H 1.08999 * 109.52660 * 177.55812 * 5 4 3 38 38 H 1.09000 * 109.52127 * 297.69180 * 5 4 3 39 39 H 1.08998 * 109.50188 * 182.40808 * 6 5 4 40 40 H 1.08994 * 109.50389 * 62.29110 * 6 5 4 41 41 H 1.09004 * 109.85762 * 59.50172 * 12 11 9 42 42 H 1.08995 * 110.00297 * 298.43119 * 12 11 9 43 43 H 1.09002 * 110.72180 * 219.45147 * 13 12 11 44 44 H 1.08994 * 110.87038 * 96.25177 * 13 12 11 45 45 H 1.00905 * 110.99623 * 216.73665 * 16 14 13 46 46 H 1.09001 * 109.47396 * 299.99594 * 17 16 14 47 47 H 1.08995 * 109.47545 * 60.00038 * 17 16 14 48 48 H 0.96995 * 119.99772 * 359.97438 * 20 18 17 49 49 H 0.97004 * 120.00096 * 180.02562 * 24 23 21 50 50 H 1.09002 * 110.36696 * 85.25946 * 29 11 9 51 51 H 1.08995 * 110.36608 * 323.04783 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1188 0.5370 1.0144 6 6 3.5181 -0.8714 1.0209 7 6 1.9952 -0.7707 1.1338 8 1 1.7325 -0.2706 2.0660 9 6 1.3982 -2.1543 1.1208 10 8 0.9164 -2.5973 0.0996 11 7 1.3995 -2.8995 2.2437 12 6 1.9480 -2.4908 3.5481 13 6 1.7007 -3.6517 4.5344 14 6 0.5244 -4.4212 3.8773 15 1 -0.4311 -3.9565 4.1211 16 7 0.5343 -5.8362 4.2717 17 6 -0.3105 -6.0596 5.4525 18 6 -0.2760 -7.5192 5.8260 19 8 0.3867 -8.2969 5.1724 20 7 -0.9824 -7.9605 6.8855 21 6 -0.9506 -9.2883 7.2257 22 1 -0.3599 -9.9806 6.6442 23 6 -1.6784 -9.7432 8.3183 24 7 -2.3976 -8.9008 9.0254 25 14 -1.6345 -11.5522 8.7821 26 1 -0.2376 -11.9503 9.0907 27 1 -2.4882 -11.7779 9.9761 28 1 -2.1424 -12.3662 7.6488 29 6 0.8512 -4.2620 2.3715 30 1 -0.3633 0.4472 0.9253 31 1 -0.3633 0.5777 -0.8499 32 1 -0.3634 -1.0249 -0.0753 33 1 1.5635 1.9256 -0.8330 34 1 1.7326 1.8608 0.9375 35 1 3.7814 0.8567 -1.0906 36 1 3.9099 2.3512 -0.1311 37 1 5.1998 0.4713 0.8906 38 1 3.8896 1.0361 1.9559 39 1 3.9098 -1.4302 1.8709 40 1 3.7813 -1.3836 0.0955 41 1 1.4399 -1.5922 3.8983 42 1 3.0177 -2.3009 3.4598 43 1 1.4129 -3.2707 5.5142 44 1 2.5817 -4.2885 4.6134 45 1 0.2482 -6.4271 3.5054 46 1 0.0627 -5.4624 6.2845 47 1 -1.3358 -5.7670 5.2264 48 1 -1.5126 -7.3386 7.4079 49 1 -2.9054 -9.2183 9.7885 50 1 1.5925 -4.9997 2.0642 51 1 -0.0547 -4.3639 1.7739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713148378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:23 Heat of formation + Delta-G solvation = -83.521644 kcal Electronic energy + Delta-G solvation = -29555.483705 eV Core-core repulsion = 25488.503906 eV Total energy + Delta-G solvation = -4066.979799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.66096 -40.26025 -39.57862 -38.37035 -36.23270 -35.59622 -34.44820 -33.27855 -32.61399 -31.39518 -30.01430 -28.06942 -27.55600 -25.88203 -25.04400 -23.97376 -23.64708 -21.65770 -21.18109 -20.90471 -20.12723 -19.89057 -18.38718 -17.88189 -17.53647 -16.91149 -16.78507 -16.38384 -16.20624 -16.07969 -15.85050 -15.62477 -15.32753 -15.24558 -14.76046 -14.55558 -14.39040 -14.20557 -14.05846 -13.93226 -13.80730 -13.56114 -13.47770 -13.18410 -12.99809 -12.84476 -12.68692 -12.53299 -12.42731 -12.36795 -12.22636 -12.12016 -11.88029 -11.72966 -11.62678 -11.50151 -11.33458 -10.69073 -10.35225 -10.01603 -9.73916 -9.42940 -9.32352 -8.46542 -5.95186 1.40065 1.42234 1.48548 1.52835 1.72282 2.05503 2.29502 2.84033 2.93873 3.20836 3.23816 3.49904 3.63384 3.69930 3.78968 3.93405 4.01712 4.07552 4.14372 4.22699 4.25464 4.31084 4.34523 4.41865 4.48104 4.48559 4.53437 4.57621 4.65007 4.72856 4.75319 4.81614 4.82172 4.95740 4.99789 5.03659 5.05938 5.16464 5.18377 5.24651 5.26558 5.41209 5.44835 5.87151 5.90723 6.07845 6.08567 6.27854 6.44018 6.60188 7.07630 7.12774 7.56371 8.11795 8.70445 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.034380 B = 0.001735 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.233277 B =16134.243607 C =16273.605271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.114 4.114 6 C -0.106 4.106 7 C 0.082 3.918 8 H 0.080 0.920 9 C 0.527 3.473 10 O -0.568 6.568 11 N -0.615 5.615 12 C 0.100 3.900 13 C -0.117 4.117 14 C 0.077 3.923 15 H 0.073 0.927 16 N -0.668 5.668 17 C 0.068 3.932 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.108 3.892 30 H 0.031 0.969 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.345 0.655 46 H 0.111 0.889 47 H 0.067 0.933 48 H 0.397 0.603 49 H 0.278 0.722 50 H 0.068 0.932 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.284 26.676 -10.873 30.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.156 4.156 5 C -0.152 4.152 6 C -0.144 4.144 7 C -0.029 4.029 8 H 0.097 0.903 9 C 0.316 3.684 10 O -0.446 6.446 11 N -0.350 5.350 12 C -0.022 4.022 13 C -0.156 4.156 14 C -0.033 4.033 15 H 0.090 0.910 16 N -0.300 5.300 17 C -0.065 4.065 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.016 4.016 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.098 0.902 45 H 0.165 0.835 46 H 0.129 0.871 47 H 0.085 0.915 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.074 25.788 -11.806 30.098 hybrid contribution -1.780 -0.678 0.710 2.032 sum 8.294 25.110 -11.096 28.678 Atomic orbital electron populations 1.22479 0.86902 1.02560 1.00940 1.61623 1.08261 1.14748 1.42311 1.22231 0.96372 0.87067 1.01464 1.21640 0.93621 1.01366 0.99014 1.21577 1.00747 0.93549 0.99313 1.21578 0.90437 0.99607 1.02823 1.21570 0.97144 0.89817 0.94415 0.90291 1.20730 0.78591 0.87654 0.81445 1.90674 1.47598 1.73661 1.32669 1.48552 1.59306 1.16064 1.11038 1.22400 1.00363 0.98549 0.80868 1.22711 0.98511 0.95561 0.98791 1.22701 0.99203 0.88501 0.92900 0.90954 1.60116 1.56630 1.05191 1.08084 1.21584 0.96931 0.92309 0.95635 1.20879 0.82709 0.91434 0.82545 1.90502 1.46492 1.58892 1.55176 1.41914 1.42980 1.09160 1.26886 1.19625 1.28634 0.85685 1.12520 0.90366 1.26016 0.95406 1.04203 0.95564 1.69657 1.30170 1.36731 1.19423 0.85004 0.78448 0.77128 0.77854 1.19722 1.19471 1.19833 1.22196 0.98892 0.84258 0.96262 0.95090 0.90316 0.92309 0.89838 0.93720 0.92230 0.89218 0.90042 0.90434 0.89640 0.92573 0.89130 0.89068 0.88171 0.90177 0.83532 0.87109 0.91496 0.76896 0.91286 0.91408 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.09 127.69 1.16 1.52 16 2 N -0.54 -10.07 4.51 -901.60 -4.07 -14.13 16 3 C 0.06 0.67 5.46 86.33 0.47 1.14 16 4 C -0.12 -1.16 6.09 30.65 0.19 -0.97 16 5 C -0.11 -1.01 6.00 30.67 0.18 -0.82 16 6 C -0.11 -1.46 5.34 30.65 0.16 -1.29 16 7 C 0.08 1.39 1.66 44.19 0.07 1.46 16 8 H 0.08 1.03 7.48 -2.39 -0.02 1.02 16 9 C 0.53 12.53 6.29 87.66 0.55 13.08 16 10 O -0.57 -18.58 14.78 -3.04 -0.04 -18.63 16 11 N -0.62 -12.56 3.34 -811.12 -2.71 -15.26 16 12 C 0.10 1.32 6.23 86.68 0.54 1.86 16 13 C -0.12 -1.93 6.65 31.78 0.21 -1.72 16 14 C 0.08 1.67 3.38 46.31 0.16 1.82 16 15 H 0.07 1.44 7.83 -2.38 -0.02 1.42 16 16 N -0.67 -19.74 6.04 -488.42 -2.95 -22.69 16 17 C 0.07 2.17 6.03 85.56 0.52 2.68 16 18 C 0.44 20.28 7.82 87.66 0.69 20.96 16 19 O -0.62 -34.21 15.78 -3.06 -0.05 -34.26 16 20 N -0.57 -28.82 5.29 -306.98 -1.62 -30.45 16 21 C -0.34 -18.88 9.68 84.04 0.81 -18.07 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 24 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 25 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 29 C 0.11 2.53 6.30 86.85 0.55 3.07 16 30 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 32 H 0.06 1.48 5.62 -2.39 -0.01 1.47 16 33 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 34 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.09 0.94 6.66 -2.39 -0.02 0.93 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 41 H 0.09 0.82 7.86 -2.38 -0.02 0.81 16 42 H 0.09 0.90 6.74 -2.39 -0.02 0.88 16 43 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.35 11.17 8.14 -89.69 -0.73 10.44 16 46 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 47 H 0.07 1.89 8.09 -2.39 -0.02 1.87 16 48 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 49 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 50 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.06 1.67 8.03 -2.39 -0.02 1.65 16 Total: -1.00 -73.58 400.74 -2.92 -76.50 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -0.52 Total: 38.34 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 6.73 Total: 24.57 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -11.06 Total: -131.23 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -0.09 Total: -52.89 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -73.58 -2.92 -76.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713148378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.018 kcal (2) G-P(sol) polarization free energy of solvation -73.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds