Wall clock time and date at job start Tue Mar 31 2020 22:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46847 * 110.99990 * 2 1 4 4 C 1.53036 * 109.51992 * 185.84219 * 3 2 1 5 5 C 1.53116 * 109.27760 * 300.81627 * 4 3 2 6 6 C 1.50706 * 109.52500 * 177.56300 * 5 4 3 7 7 O 1.21281 * 119.99699 * 0.12687 * 6 5 4 8 8 N 1.34773 * 120.00080 * 180.13177 * 6 5 4 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.84688 * 335.91529 * 9 8 6 11 11 C 1.53775 * 113.61467 * 107.22238 * 9 8 6 12 12 C 1.53784 * 87.08084 * 89.11917 * 11 9 8 13 13 H 1.09000 * 113.68950 * 270.86965 * 12 11 9 14 14 N 1.46894 * 113.61408 * 139.98157 * 12 11 9 15 15 C 1.46906 * 111.00242 * 107.50396 * 14 12 11 16 16 C 1.50693 * 109.47134 * 179.97438 * 15 14 12 17 17 O 1.21299 * 120.00348 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99914 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00233 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99503 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00286 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00033 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99654 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47073 * 90.00344 * 23 21 19 25 25 H 1.48498 * 109.46643 * 209.99984 * 23 21 19 26 26 H 1.48497 * 109.47452 * 330.00122 * 23 21 19 27 27 C 1.53780 * 87.08215 * 25.42909 * 12 11 9 28 28 C 1.53119 * 109.21343 * 57.62601 * 5 4 3 29 29 C 1.46848 * 110.99902 * 124.21053 * 2 1 3 30 30 H 1.09002 * 109.46991 * 60.00093 * 1 2 3 31 31 H 1.09003 * 109.47425 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46763 * 300.00420 * 1 2 3 33 33 H 1.08996 * 109.46498 * 65.82322 * 3 2 1 34 34 H 1.08999 * 109.45108 * 305.84911 * 3 2 1 35 35 H 1.09003 * 109.50043 * 180.88019 * 4 3 2 36 36 H 1.09003 * 109.50972 * 60.76094 * 4 3 2 37 37 H 1.09003 * 109.52725 * 297.68853 * 5 4 3 38 38 H 0.97005 * 120.00161 * 359.72088 * 8 6 5 39 39 H 1.09003 * 113.61318 * 203.66715 * 11 9 8 40 40 H 1.08997 * 113.62092 * 334.56858 * 11 9 8 41 41 H 1.00898 * 111.00515 * 343.54698 * 14 12 11 42 42 H 1.09003 * 109.46834 * 299.99651 * 15 14 12 43 43 H 1.08995 * 109.47138 * 59.99720 * 15 14 12 44 44 H 0.96993 * 120.00220 * 359.97438 * 18 16 15 45 45 H 0.96997 * 120.00234 * 179.97438 * 22 21 19 46 46 H 1.08994 * 113.61843 * 220.02017 * 27 12 11 47 47 H 1.09008 * 113.69032 * 89.12450 * 27 12 11 48 48 H 1.09006 * 109.50299 * 62.31890 * 28 5 4 49 49 H 1.09001 * 109.50923 * 182.43159 * 28 5 4 50 50 H 1.08996 * 109.46384 * 294.17583 * 29 2 1 51 51 H 1.09003 * 109.46137 * 54.15287 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1188 0.5369 1.0143 6 6 5.6133 0.4462 0.8431 7 8 6.1471 0.9695 -0.1120 8 7 6.3567 -0.2164 1.7512 9 6 7.8096 -0.3041 1.5851 10 1 8.1249 -0.1864 0.5483 11 6 8.5967 0.5723 2.5736 12 6 8.5802 -0.6306 3.5314 13 1 7.7105 -0.6558 4.1880 14 7 9.8450 -0.8261 4.2525 15 6 9.7084 -0.4512 5.6663 16 6 11.0226 -0.6653 6.3720 17 8 11.9789 -1.0889 5.7577 18 7 11.1352 -0.3869 7.6859 19 6 12.3309 -0.5812 8.3278 20 1 13.1826 -0.9576 7.7806 21 6 12.4471 -0.2937 9.6823 22 7 13.5931 -0.4804 10.2976 23 14 10.9742 0.3580 10.6284 24 1 10.2035 -0.7803 11.1900 25 1 11.4432 1.2316 11.7338 26 1 10.1051 1.1409 9.7135 27 6 8.4374 -1.5207 2.2855 28 6 3.5183 -0.8716 1.0224 29 6 1.9953 -0.7708 1.1337 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7325 1.8608 0.9375 34 1 1.5634 1.9255 -0.8331 35 1 3.9099 2.3512 -0.1311 36 1 3.7814 0.8566 -1.0907 37 1 3.8897 1.0360 1.9559 38 1 5.9302 -0.6315 2.5173 39 1 9.5941 0.8378 2.2232 40 1 8.0336 1.4304 2.9405 41 1 10.5947 -0.3132 3.8132 42 1 9.4239 0.5986 5.7380 43 1 8.9409 -1.0683 6.1333 44 1 10.3704 -0.0485 8.1772 45 1 13.6744 -0.2794 11.2430 46 1 7.7457 -2.3522 2.4199 47 1 9.3907 -1.8283 1.8554 48 1 3.7815 -1.3848 0.0975 49 1 3.9102 -1.4295 1.8729 50 1 1.7325 -0.2709 2.0660 51 1 1.5635 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713167625.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:49 Heat of formation + Delta-G solvation = -46.026718 kcal Electronic energy + Delta-G solvation = -28801.147583 eV Core-core repulsion = 24735.793686 eV Total energy + Delta-G solvation = -4065.353897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.83726 -39.54354 -38.51334 -38.02645 -34.69689 -34.14776 -33.83709 -32.40359 -31.65190 -31.28231 -27.85356 -26.95939 -25.85318 -24.59145 -23.85149 -23.62220 -22.74742 -21.32304 -20.08082 -19.81220 -19.30175 -18.31542 -17.61244 -16.57023 -16.16843 -16.06194 -15.62789 -15.51278 -15.35490 -15.07199 -14.85661 -14.81172 -14.39071 -14.30131 -13.92122 -13.64965 -13.37035 -13.09333 -12.95603 -12.92198 -12.82401 -12.60261 -12.37173 -12.23640 -12.14175 -11.88485 -11.76370 -11.64109 -11.58049 -11.19941 -11.17214 -10.97259 -10.90455 -10.62193 -10.52176 -9.99815 -9.98833 -9.59159 -9.30750 -8.85943 -8.59917 -8.20628 -8.11540 -6.32637 -3.84145 2.32687 2.80810 3.00135 3.04708 3.13044 3.39562 3.72029 4.06511 4.09757 4.12337 4.21788 4.33084 4.35477 4.49255 4.61006 4.67990 4.73559 4.81044 4.84038 4.89686 4.94748 4.97013 5.00313 5.12069 5.17336 5.21011 5.31054 5.37686 5.37784 5.43631 5.53484 5.57808 5.61879 5.66512 5.67614 5.68532 5.77319 5.84357 5.90793 5.91693 5.95537 6.33777 6.52050 6.54844 7.11447 7.19202 7.54530 7.57147 7.93531 8.13019 8.58074 8.93413 9.40751 9.80938 10.80510 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.001744 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.291438 B =16049.641645 C =16971.700443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.055 3.945 4 C -0.096 4.096 5 C -0.109 4.109 6 C 0.521 3.479 7 O -0.536 6.536 8 N -0.712 5.712 9 C 0.118 3.882 10 H 0.104 0.896 11 C -0.181 4.181 12 C 0.068 3.932 13 H 0.093 0.907 14 N -0.656 5.656 15 C 0.047 3.953 16 C 0.449 3.551 17 O -0.565 6.565 18 N -0.591 5.591 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.132 4.132 28 C -0.108 4.108 29 C 0.056 3.944 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.400 0.600 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.354 0.646 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.073 0.927 47 H 0.102 0.898 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.036 0.964 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.713 2.420 -17.960 33.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.073 4.073 4 C -0.135 4.135 5 C -0.130 4.130 6 C 0.307 3.693 7 O -0.412 6.412 8 N -0.362 5.362 9 C 0.012 3.988 10 H 0.122 0.878 11 C -0.221 4.221 12 C -0.043 4.043 13 H 0.111 0.889 14 N -0.288 5.288 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.446 6.446 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.171 4.171 28 C -0.146 4.146 29 C -0.072 4.072 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.234 0.766 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.175 0.825 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.120 0.880 48 H 0.098 0.902 49 H 0.092 0.908 50 H 0.054 0.946 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -27.465 1.619 -19.167 33.531 hybrid contribution -1.587 1.747 2.211 3.234 sum -29.052 3.366 -16.955 33.806 Atomic orbital electron populations 1.22358 0.87026 1.02210 1.00749 1.61924 1.07742 1.13960 1.43349 1.22143 0.95411 0.88994 1.00749 1.21408 0.93227 1.00536 0.98286 1.21416 0.91348 0.98679 1.01572 1.20607 0.89098 0.77510 0.82050 1.90710 1.73907 1.45836 1.30783 1.45739 1.07129 1.56136 1.27245 1.21768 0.79338 0.97357 1.00294 0.87841 1.24197 1.01393 0.98328 0.98193 1.23101 0.93318 0.94417 0.93504 0.88928 1.60012 1.05131 1.62444 1.01197 1.21746 0.97772 0.99010 0.90001 1.19735 0.89696 0.84427 0.82691 1.90570 1.39824 1.48698 1.65545 1.42209 1.12606 1.59682 1.08507 1.19442 0.89504 1.41659 0.92841 0.86269 1.25039 0.96966 0.97763 0.96380 1.69619 1.23756 1.47686 1.11022 0.86666 0.82564 0.79533 0.80574 1.19598 1.20185 1.19582 1.23458 1.01686 0.96214 0.95700 1.21597 0.94748 0.94832 1.03430 1.22085 0.94881 0.98650 0.91546 0.91228 0.91258 0.95648 0.94783 0.90263 0.90659 0.90058 0.88811 0.76554 0.88745 0.91346 0.82489 0.93768 0.89572 0.79726 0.91605 0.90857 0.88002 0.90234 0.90789 0.94609 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.59 60.07 0.58 0.69 16 2 N -0.54 -3.45 4.91 -242.96 -1.19 -4.64 16 3 C 0.05 0.33 5.46 -3.83 -0.02 0.31 16 4 C -0.10 -0.71 4.68 -26.65 -0.12 -0.84 16 5 C -0.11 -0.73 2.59 -91.65 -0.24 -0.96 16 6 C 0.52 4.91 7.16 -10.98 -0.08 4.84 16 7 O -0.54 -7.26 15.58 5.56 0.09 -7.17 16 8 N -0.71 -5.55 5.17 -53.01 -0.27 -5.82 16 9 C 0.12 1.10 4.32 -67.12 -0.29 0.81 16 10 H 0.10 1.12 7.47 -51.93 -0.39 0.73 16 11 C -0.18 -1.79 7.49 -25.92 -0.19 -1.99 16 12 C 0.07 0.71 4.06 -66.90 -0.27 0.44 16 13 H 0.09 0.85 7.87 -51.93 -0.41 0.45 16 14 N -0.66 -9.62 6.24 -107.13 -0.67 -10.29 16 15 C 0.05 0.76 6.01 -4.98 -0.03 0.73 16 16 C 0.45 10.07 7.82 -10.99 -0.09 9.98 16 17 O -0.56 -15.09 15.78 5.54 0.09 -15.00 16 18 N -0.59 -13.95 5.09 -10.96 -0.06 -14.01 16 19 C -0.31 -8.63 10.16 -14.93 -0.15 -8.79 16 20 H 0.12 3.85 7.39 -52.48 -0.39 3.47 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16 23 Si 0.88 19.20 27.74 -169.99 -4.71 14.48 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 27 C -0.13 -1.22 7.63 -25.92 -0.20 -1.42 16 28 C -0.11 -0.59 5.26 -26.65 -0.14 -0.73 16 29 C 0.06 0.30 5.46 -3.83 -0.02 0.28 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.02 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.40 2.18 8.19 -40.82 -0.33 1.84 16 39 H 0.09 0.97 7.82 -51.93 -0.41 0.56 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.35 5.47 7.90 -39.29 -0.31 5.16 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.21 8.13 -51.93 -0.42 0.79 16 44 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.10 1.03 8.14 -51.92 -0.42 0.61 16 48 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.29 7.66 -51.93 -0.40 -0.11 16 50 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 51 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 LS Contribution 406.79 15.07 6.13 6.13 Total: -1.00 -34.64 406.79 -9.98 -44.62 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -8.79 Total: 12.20 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -1.36 Total: 4.39 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -1.42 Total: -59.65 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.17 Total: -22.17 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.64 -9.98 -44.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713167625.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.411 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds