Wall clock time and date at job start Tue Mar 31 2020 22:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46847 * 110.99990 * 2 1 4 4 C 1.53036 * 109.51992 * 185.84219 * 3 2 1 5 5 C 1.53116 * 109.27760 * 300.81627 * 4 3 2 6 6 C 1.50706 * 109.52500 * 177.56300 * 5 4 3 7 7 O 1.21281 * 119.99699 * 0.12687 * 6 5 4 8 8 N 1.34773 * 120.00080 * 180.13177 * 6 5 4 9 9 C 1.46506 * 119.99969 * 180.02562 * 8 6 5 10 10 H 1.09003 * 112.84688 * 335.91529 * 9 8 6 11 11 C 1.53775 * 113.61467 * 107.22238 * 9 8 6 12 12 C 1.53784 * 87.08084 * 89.11917 * 11 9 8 13 13 H 1.09000 * 113.68950 * 270.86965 * 12 11 9 14 14 N 1.46894 * 113.61408 * 139.98157 * 12 11 9 15 15 C 1.46906 * 111.00242 * 107.50396 * 14 12 11 16 16 C 1.50693 * 109.47134 * 179.97438 * 15 14 12 17 17 O 1.21299 * 120.00348 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99914 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00233 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99503 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00286 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00033 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99654 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47073 * 90.00344 * 23 21 19 25 25 H 1.48498 * 109.46643 * 209.99984 * 23 21 19 26 26 H 1.48497 * 109.47452 * 330.00122 * 23 21 19 27 27 C 1.53780 * 87.08215 * 25.42909 * 12 11 9 28 28 C 1.53119 * 109.21343 * 57.62601 * 5 4 3 29 29 C 1.46848 * 110.99902 * 124.21053 * 2 1 3 30 30 H 1.09002 * 109.46991 * 60.00093 * 1 2 3 31 31 H 1.09003 * 109.47425 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46763 * 300.00420 * 1 2 3 33 33 H 1.08996 * 109.46498 * 65.82322 * 3 2 1 34 34 H 1.08999 * 109.45108 * 305.84911 * 3 2 1 35 35 H 1.09003 * 109.50043 * 180.88019 * 4 3 2 36 36 H 1.09003 * 109.50972 * 60.76094 * 4 3 2 37 37 H 1.09003 * 109.52725 * 297.68853 * 5 4 3 38 38 H 0.97005 * 120.00161 * 359.72088 * 8 6 5 39 39 H 1.09003 * 113.61318 * 203.66715 * 11 9 8 40 40 H 1.08997 * 113.62092 * 334.56858 * 11 9 8 41 41 H 1.00898 * 111.00515 * 343.54698 * 14 12 11 42 42 H 1.09003 * 109.46834 * 299.99651 * 15 14 12 43 43 H 1.08995 * 109.47138 * 59.99720 * 15 14 12 44 44 H 0.96993 * 120.00220 * 359.97438 * 18 16 15 45 45 H 0.96997 * 120.00234 * 179.97438 * 22 21 19 46 46 H 1.08994 * 113.61843 * 220.02017 * 27 12 11 47 47 H 1.09008 * 113.69032 * 89.12450 * 27 12 11 48 48 H 1.09006 * 109.50299 * 62.31890 * 28 5 4 49 49 H 1.09001 * 109.50923 * 182.43159 * 28 5 4 50 50 H 1.08996 * 109.46384 * 294.17583 * 29 2 1 51 51 H 1.09003 * 109.46137 * 54.15287 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1468 5 6 4.1188 0.5369 1.0143 6 6 5.6133 0.4462 0.8431 7 8 6.1471 0.9695 -0.1120 8 7 6.3567 -0.2164 1.7512 9 6 7.8096 -0.3041 1.5851 10 1 8.1249 -0.1864 0.5483 11 6 8.5967 0.5723 2.5736 12 6 8.5802 -0.6306 3.5314 13 1 7.7105 -0.6558 4.1880 14 7 9.8450 -0.8261 4.2525 15 6 9.7084 -0.4512 5.6663 16 6 11.0226 -0.6653 6.3720 17 8 11.9789 -1.0889 5.7577 18 7 11.1352 -0.3869 7.6859 19 6 12.3309 -0.5812 8.3278 20 1 13.1826 -0.9576 7.7806 21 6 12.4471 -0.2937 9.6823 22 7 13.5931 -0.4804 10.2976 23 14 10.9742 0.3580 10.6284 24 1 10.2035 -0.7803 11.1900 25 1 11.4432 1.2316 11.7338 26 1 10.1051 1.1409 9.7135 27 6 8.4374 -1.5207 2.2855 28 6 3.5183 -0.8716 1.0224 29 6 1.9953 -0.7708 1.1337 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7325 1.8608 0.9375 34 1 1.5634 1.9255 -0.8331 35 1 3.9099 2.3512 -0.1311 36 1 3.7814 0.8566 -1.0907 37 1 3.8897 1.0360 1.9559 38 1 5.9302 -0.6315 2.5173 39 1 9.5941 0.8378 2.2232 40 1 8.0336 1.4304 2.9405 41 1 10.5947 -0.3132 3.8132 42 1 9.4239 0.5986 5.7380 43 1 8.9409 -1.0683 6.1333 44 1 10.3704 -0.0485 8.1772 45 1 13.6744 -0.2794 11.2430 46 1 7.7457 -2.3522 2.4199 47 1 9.3907 -1.8283 1.8554 48 1 3.7815 -1.3848 0.0975 49 1 3.9102 -1.4295 1.8729 50 1 1.7325 -0.2709 2.0660 51 1 1.5635 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713167625.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:48 Heat of formation + Delta-G solvation = -75.061895 kcal Electronic energy + Delta-G solvation = -28802.406643 eV Core-core repulsion = 24735.793686 eV Total energy + Delta-G solvation = -4066.612957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55919 -40.45901 -39.89929 -38.89255 -36.15832 -35.44458 -34.66467 -33.76021 -33.23601 -31.75775 -28.75371 -28.03274 -26.63271 -26.00096 -24.68674 -24.11539 -23.63634 -21.95730 -21.31819 -20.63426 -20.60487 -20.08062 -18.29436 -17.77381 -17.14532 -17.02278 -16.67724 -16.47860 -16.10956 -16.01909 -15.94767 -15.61989 -15.51272 -15.17667 -14.95263 -14.55051 -14.49315 -14.39945 -14.08499 -13.96589 -13.52021 -13.46415 -13.36459 -13.27221 -13.14330 -12.85187 -12.65692 -12.48834 -12.40938 -12.24746 -12.14603 -11.98056 -11.74403 -11.68264 -11.50791 -11.44193 -11.32851 -10.74630 -10.41701 -10.24475 -10.05819 -9.25680 -9.23015 -8.40922 -6.02144 1.30376 1.36477 1.45304 1.60659 1.96536 2.13479 2.23677 2.75823 3.00773 3.15423 3.37121 3.57772 3.61018 3.69962 3.77535 3.84915 3.97276 4.08146 4.17122 4.18209 4.24768 4.36674 4.47651 4.48076 4.55852 4.56604 4.59090 4.60926 4.73894 4.76164 4.82199 4.86439 4.90911 4.95279 4.98436 5.04250 5.06223 5.09895 5.16189 5.18336 5.35043 5.52406 5.59456 5.93112 6.13119 6.14262 6.15790 6.38460 6.56263 6.60412 6.88609 7.26471 7.40318 7.97401 8.76805 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.001744 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.291438 B =16049.641645 C =16971.700443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.563 5.563 3 C 0.060 3.940 4 C -0.095 4.095 5 C -0.101 4.101 6 C 0.519 3.481 7 O -0.584 6.584 8 N -0.697 5.697 9 C 0.124 3.876 10 H 0.084 0.916 11 C -0.177 4.177 12 C 0.072 3.928 13 H 0.119 0.881 14 N -0.675 5.675 15 C 0.062 3.938 16 C 0.446 3.554 17 O -0.616 6.616 18 N -0.590 5.590 19 C -0.331 4.331 20 H 0.054 0.946 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.256 1.256 25 H -0.276 1.276 26 H -0.230 1.230 27 C -0.124 4.124 28 C -0.103 4.103 29 C 0.056 3.944 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.116 0.884 38 H 0.416 0.584 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.345 0.655 42 H 0.075 0.925 43 H 0.118 0.882 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.061 0.939 49 H 0.096 0.904 50 H 0.046 0.954 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.243 2.957 -16.567 37.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.289 5.289 3 C -0.068 4.068 4 C -0.133 4.133 5 C -0.122 4.122 6 C 0.307 3.693 7 O -0.464 6.464 8 N -0.349 5.349 9 C 0.018 3.982 10 H 0.102 0.898 11 C -0.217 4.217 12 C -0.038 4.038 13 H 0.137 0.863 14 N -0.306 5.306 15 C -0.070 4.070 16 C 0.234 3.766 17 O -0.501 6.501 18 N -0.232 5.232 19 C -0.460 4.460 20 H 0.072 0.928 21 C -0.214 4.214 22 N -0.576 5.576 23 Si 0.786 3.214 24 H -0.180 1.180 25 H -0.202 1.202 26 H -0.153 1.153 27 C -0.163 4.163 28 C -0.141 4.141 29 C -0.071 4.071 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.253 0.747 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.165 0.835 42 H 0.093 0.907 43 H 0.136 0.864 44 H 0.226 0.774 45 H 0.088 0.912 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.115 0.885 50 H 0.064 0.936 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -32.043 2.135 -17.771 36.703 hybrid contribution -0.063 1.517 1.644 2.238 sum -32.106 3.652 -16.126 36.114 Atomic orbital electron populations 1.22373 0.86138 1.02700 1.01037 1.61923 1.08689 1.14004 1.44251 1.22069 0.94177 0.89285 1.01246 1.21343 0.94447 0.99907 0.97613 1.21410 0.89085 0.99659 1.02034 1.21127 0.90241 0.76629 0.81339 1.90697 1.74932 1.47956 1.32788 1.45603 1.06361 1.55493 1.27407 1.21574 0.80192 0.97326 0.99150 0.89829 1.24136 1.01081 0.98383 0.98129 1.23251 0.92215 0.94718 0.93649 0.86291 1.60041 1.06800 1.62874 1.00914 1.21693 0.93717 1.01554 0.90036 1.21099 0.91582 0.81750 0.82158 1.90551 1.42569 1.50338 1.66637 1.42028 1.11631 1.60423 1.09143 1.19017 0.89948 1.43459 0.93592 0.92830 1.26146 1.01162 0.97202 0.96935 1.69809 1.27102 1.48861 1.11782 0.85341 0.77821 0.79407 0.78782 1.18009 1.20166 1.15329 1.23379 1.01500 0.96569 0.94888 1.21589 0.95128 0.93864 1.03504 1.22126 0.94423 0.99041 0.91556 0.91173 0.90683 0.95136 0.93872 0.90204 0.91536 0.92531 0.86621 0.74653 0.89693 0.91028 0.83514 0.90672 0.86380 0.77421 0.91160 0.89170 0.89250 0.92053 0.88511 0.93612 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.59 127.69 1.22 1.42 16 2 N -0.56 -6.13 4.91 -922.58 -4.53 -10.66 16 3 C 0.06 0.65 5.46 86.33 0.47 1.12 16 4 C -0.09 -1.35 4.68 30.64 0.14 -1.21 16 5 C -0.10 -1.14 2.59 -11.46 -0.03 -1.17 16 6 C 0.52 9.09 7.16 87.66 0.63 9.72 16 7 O -0.58 -15.95 15.58 -3.03 -0.05 -16.00 16 8 N -0.70 -9.10 5.17 -440.03 -2.27 -11.37 16 9 C 0.12 2.11 4.32 45.51 0.20 2.31 16 10 H 0.08 1.81 7.47 -2.39 -0.02 1.80 16 11 C -0.18 -3.16 7.49 31.12 0.23 -2.93 16 12 C 0.07 1.27 4.06 45.44 0.18 1.46 16 13 H 0.12 1.54 7.87 -2.39 -0.02 1.52 16 14 N -0.68 -18.33 6.24 -492.86 -3.08 -21.41 16 15 C 0.06 1.76 6.01 85.55 0.51 2.28 16 16 C 0.45 19.72 7.82 87.65 0.69 20.40 16 17 O -0.62 -34.01 15.78 -3.09 -0.05 -34.06 16 18 N -0.59 -27.36 5.09 -306.98 -1.56 -28.92 16 19 C -0.33 -19.33 10.16 84.04 0.85 -18.47 16 20 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 21 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 22 N -0.93 -56.23 13.96 21.66 0.30 -55.93 16 23 Si 0.97 38.05 27.74 68.60 1.90 39.95 16 24 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 25 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.23 -7.50 6.52 99.48 0.65 -6.86 16 27 C -0.12 -2.04 7.63 31.12 0.24 -1.80 16 28 C -0.10 -0.87 5.26 30.65 0.16 -0.71 16 29 C 0.06 0.44 5.46 86.33 0.47 0.91 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.48 8.09 -2.39 -0.02 0.46 16 32 H 0.03 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.08 0.82 8.12 -2.39 -0.02 0.80 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.08 8.04 -2.39 -0.02 1.06 16 37 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 38 H 0.42 2.81 8.19 -92.70 -0.76 2.05 16 39 H 0.08 1.70 7.82 -2.39 -0.02 1.68 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.35 10.44 7.90 -89.70 -0.71 9.73 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.12 2.68 8.13 -2.39 -0.02 2.66 16 44 H 0.39 14.73 5.76 -92.71 -0.53 14.20 16 45 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 48 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 49 H 0.10 0.37 7.66 -2.39 -0.02 0.36 16 50 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 51 H 0.09 0.57 8.09 -2.39 -0.02 0.55 16 Total: -1.00 -82.40 406.79 -4.01 -86.40 By element: Atomic # 1 Polarization: 40.19 SS G_CDS: -1.11 Total: 39.08 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 6.44 Total: 12.91 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -11.14 Total: -128.29 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.10 Total: -50.06 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.90 Total: 39.95 kcal Total: -82.40 -4.01 -86.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713167625.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.341 kcal (2) G-P(sol) polarization free energy of solvation -82.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds