Wall clock time and date at job start Tue Mar 31 2020 22:20:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.47841 * 110.99936 * 2 1
4 4 C 1.54904 * 104.79772 * 213.63794 * 3 2 1
5 5 C 1.55140 * 101.65186 * 37.07058 * 4 3 2
6 6 H 1.09003 * 110.70406 * 82.73336 * 5 4 3
7 7 C 1.53002 * 110.85632 * 205.89523 * 5 4 3
8 8 C 1.50697 * 109.47283 * 180.14275 * 7 5 4
9 9 O 1.21281 * 119.99872 * 359.97438 * 8 7 5
10 10 N 1.34777 * 120.00108 * 180.02562 * 8 7 5
11 11 C 1.46497 * 119.99742 * 179.97438 * 10 8 7
12 12 H 1.09000 * 112.85466 * 23.79835 * 11 10 8
13 13 C 1.53778 * 113.61386 * 154.99753 * 11 10 8
14 14 C 1.53777 * 87.08435 * 89.11377 * 13 11 10
15 15 H 1.09005 * 113.61785 * 270.88778 * 14 13 11
16 16 N 1.46903 * 113.61833 * 140.06533 * 14 13 11
17 17 C 1.46898 * 111.00210 * 155.00284 * 16 14 13
18 18 C 1.50699 * 109.47345 * 180.02562 * 17 16 14
19 19 O 1.21292 * 119.99697 * 359.97438 * 18 17 16
20 20 N 1.34777 * 119.99973 * 180.02562 * 18 17 16
21 21 C 1.37098 * 119.99460 * 179.97438 * 20 18 17
22 22 H 1.07997 * 120.00648 * 359.97438 * 21 20 18
23 23 C 1.38955 * 119.99734 * 180.02562 * 21 20 18
24 24 N 1.31414 * 119.99783 * 359.97438 * 23 21 20
25 25 Si 1.86794 * 120.00113 * 179.97438 * 23 21 20
26 26 H 1.48507 * 109.47386 * 89.99717 * 25 23 21
27 27 H 1.48499 * 109.47022 * 209.99625 * 25 23 21
28 28 H 1.48500 * 109.47124 * 330.00073 * 25 23 21
29 29 C 1.53781 * 87.08144 * 25.43345 * 14 13 11
30 30 C 1.47442 * 110.99635 * 239.15937 * 2 1 3
31 31 H 1.08992 * 109.47459 * 180.83909 * 1 2 3
32 32 H 1.09004 * 109.47040 * 300.84059 * 1 2 3
33 33 H 1.09000 * 109.47033 * 60.84012 * 1 2 3
34 34 H 1.09001 * 110.37711 * 332.46741 * 3 2 1
35 35 H 1.09004 * 110.37276 * 94.80732 * 3 2 1
36 36 H 1.09004 * 110.99081 * 278.97924 * 4 3 2
37 37 H 1.08999 * 110.99293 * 155.16612 * 4 3 2
38 38 H 1.09002 * 109.46957 * 300.14270 * 7 5 4
39 39 H 1.08997 * 109.47026 * 60.13779 * 7 5 4
40 40 H 0.96991 * 119.99974 * 359.97438 * 10 8 7
41 41 H 1.08997 * 113.61773 * 203.66117 * 13 11 10
42 42 H 1.09001 * 113.61812 * 334.56608 * 13 11 10
43 43 H 1.00898 * 110.99923 * 278.95630 * 16 14 13
44 44 H 1.09007 * 109.46795 * 300.00052 * 17 16 14
45 45 H 1.08999 * 109.47600 * 59.99773 * 17 16 14
46 46 H 0.96997 * 120.00395 * 359.97438 * 20 18 17
47 47 H 0.96997 * 120.00041 * 180.02562 * 24 23 21
48 48 H 1.08995 * 113.61464 * 220.02176 * 29 14 13
49 49 H 1.09003 * 113.61397 * 89.11618 * 29 14 13
50 50 H 1.08997 * 109.88581 * 242.66105 * 30 2 1
51 51 H 1.08998 * 109.89094 * 3.85434 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9989 1.3802 0.0000
4 6 3.3047 1.3027 -0.8296
5 6 2.9158 0.2822 -1.9315
6 1 2.3744 0.7748 -2.7392
7 6 4.1548 -0.4346 -2.4718
8 6 3.7425 -1.4140 -3.5404
9 8 2.5728 -1.5278 -3.8399
10 7 4.6736 -2.1642 -4.1624
11 6 4.2726 -3.1166 -5.2008
12 1 3.3227 -2.8579 -5.6686
13 6 5.3893 -3.4350 -6.2090
14 6 5.8156 -4.5674 -5.2600
15 1 6.5357 -4.2554 -4.5035
16 7 6.2155 -5.7984 -5.9548
17 6 7.1343 -6.5939 -5.1297
18 6 7.5222 -7.8456 -5.8740
19 8 7.0766 -8.0546 -6.9825
20 7 8.3633 -8.7332 -5.3073
21 6 8.7157 -9.8721 -5.9843
22 1 8.3190 -10.0582 -6.9714
23 6 9.5825 -10.7875 -5.4000
24 7 10.0649 -10.5613 -4.1987
25 14 10.0622 -12.3397 -6.3220
26 1 11.2799 -12.0786 -7.1309
27 1 10.3377 -13.4278 -5.3497
28 1 8.9503 -12.7465 -7.2184
29 6 4.3626 -4.5862 -4.7567
30 6 1.9974 -0.7057 -1.1819
31 1 -0.3634 -1.0275 0.0150
32 1 -0.3633 0.5269 0.8824
33 1 -0.3633 0.5007 -0.8974
34 1 1.2890 2.0593 -0.4723
35 1 2.2148 1.7038 1.0183
36 1 4.1302 0.9282 -0.2243
37 1 3.5495 2.2720 -1.2639
38 1 4.8422 0.2975 -2.8956
39 1 4.6483 -0.9689 -1.6600
40 1 5.6090 -2.0734 -3.9226
41 1 5.0205 -3.7880 -7.1720
42 1 6.1313 -2.6421 -6.3037
43 1 5.4081 -6.3410 -6.2226
44 1 8.0280 -6.0084 -4.9136
45 1 6.6423 -6.8641 -4.1953
46 1 8.7194 -8.5662 -4.4207
47 1 10.6703 -11.2001 -3.7909
48 1 4.2756 -4.7226 -3.6788
49 1 3.7130 -5.2540 -5.3226
50 1 2.5697 -1.5784 -0.8675
51 1 1.1755 -1.0119 -1.8291
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001713173280.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:20:02
Heat of formation + Delta-G solvation = -49.328990 kcal
Electronic energy + Delta-G solvation = -28484.964398 eV
Core-core repulsion = 24419.467304 eV
Total energy + Delta-G solvation = -4065.497095 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.66277 -39.54398 -38.52003 -37.92896 -34.60206 -33.85185 -33.71465 -32.40815
-31.19942 -30.31146 -27.79614 -26.80075 -25.80467 -25.45459 -24.33583 -22.88610
-21.52571 -21.45881 -20.30214 -19.75894 -19.10952 -17.88983 -17.42817 -16.81066
-16.20189 -16.13085 -15.71838 -15.48445 -15.32290 -14.78017 -14.57106 -14.42082
-14.32896 -14.09849 -13.81397 -13.65790 -13.46815 -13.11368 -13.00160 -12.81171
-12.59843 -12.28012 -12.16291 -11.95182 -11.87969 -11.71827 -11.61767 -11.58260
-11.42361 -11.18985 -11.07548 -11.06179 -10.83946 -10.48668 -10.39779 -10.22008
-10.05977 -9.51798 -9.28215 -8.69207 -8.46084 -8.03499 -7.96052 -6.42621
-3.83438 2.35449 2.83635 3.17469 3.26151 3.32079 3.65664 3.89854
4.07661 4.09605 4.21403 4.29465 4.39558 4.41339 4.53686 4.57720
4.79542 4.84055 4.93155 4.93852 5.00939 5.05496 5.08725 5.15901
5.21447 5.25997 5.26642 5.34835 5.45278 5.47172 5.51731 5.63677
5.64900 5.68608 5.73385 5.75696 5.78244 5.85183 5.90892 5.96345
6.00541 6.24554 6.38585 6.58127 6.68178 7.21331 7.24556 7.54475
7.64377 7.95620 8.05536 8.60320 9.17055 9.53370 10.04793 10.75103
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.022218 B = 0.001552 C = 0.001506
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1259.941395 B =18033.230893 C =18583.138851
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 N -0.538 5.538
3 C 0.040 3.960
4 C -0.127 4.127
5 C -0.092 4.092
6 H 0.083 0.917
7 C -0.131 4.131
8 C 0.514 3.486
9 O -0.538 6.538
10 N -0.713 5.713
11 C 0.119 3.881
12 H 0.102 0.898
13 C -0.132 4.132
14 C 0.068 3.932
15 H 0.093 0.907
16 N -0.657 5.657
17 C 0.050 3.950
18 C 0.440 3.560
19 O -0.584 6.584
20 N -0.564 5.564
21 C -0.300 4.300
22 H 0.103 0.897
23 C 0.022 3.978
24 N -0.902 5.902
25 Si 0.931 3.069
26 H -0.278 1.278
27 H -0.284 1.284
28 H -0.270 1.270
29 C -0.180 4.180
30 C 0.051 3.949
31 H 0.068 0.932
32 H 0.066 0.934
33 H 0.027 0.973
34 H 0.046 0.954
35 H 0.080 0.920
36 H 0.078 0.922
37 H 0.075 0.925
38 H 0.096 0.904
39 H 0.098 0.902
40 H 0.401 0.599
41 H 0.100 0.900
42 H 0.072 0.928
43 H 0.352 0.648
44 H 0.085 0.915
45 H 0.043 0.957
46 H 0.392 0.608
47 H 0.271 0.729
48 H 0.068 0.932
49 H 0.093 0.907
50 H 0.073 0.927
51 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.544 25.527 9.334 29.935
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 N -0.262 5.262
3 C -0.087 4.087
4 C -0.165 4.165
5 C -0.112 4.112
6 H 0.101 0.899
7 C -0.172 4.172
8 C 0.301 3.699
9 O -0.415 6.415
10 N -0.364 5.364
11 C 0.013 3.987
12 H 0.121 0.879
13 C -0.171 4.171
14 C -0.043 4.043
15 H 0.111 0.889
16 N -0.288 5.288
17 C -0.083 4.083
18 C 0.225 3.775
19 O -0.468 6.468
20 N -0.200 5.200
21 C -0.430 4.430
22 H 0.121 0.879
23 C -0.179 4.179
24 N -0.543 5.543
25 Si 0.758 3.242
26 H -0.204 1.204
27 H -0.209 1.209
28 H -0.194 1.194
29 C -0.221 4.221
30 C -0.077 4.077
31 H 0.087 0.913
32 H 0.085 0.915
33 H 0.046 0.954
34 H 0.064 0.936
35 H 0.098 0.902
36 H 0.097 0.903
37 H 0.094 0.906
38 H 0.115 0.885
39 H 0.116 0.884
40 H 0.236 0.764
41 H 0.119 0.881
42 H 0.091 0.909
43 H 0.173 0.827
44 H 0.103 0.897
45 H 0.062 0.938
46 H 0.225 0.775
47 H 0.081 0.919
48 H 0.087 0.913
49 H 0.111 0.889
50 H 0.092 0.908
51 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -12.911 25.190 8.578 29.577
hybrid contribution 0.190 -0.691 0.271 0.766
sum -12.721 24.500 8.849 28.989
Atomic orbital electron populations
1.22535 0.87681 1.02220 1.00433 1.63587 1.08047 1.14173 1.40407
1.23050 0.95504 0.89725 1.00460 1.22800 0.97969 0.99114 0.96579
1.22128 0.95303 0.96091 0.97677 0.89906 1.21698 0.99483 0.98109
0.97876 1.20711 0.85898 0.80988 0.82338 1.90701 1.18017 1.67937
1.64798 1.45745 1.10492 1.40599 1.39546 1.21757 0.99571 0.88356
0.89045 0.87948 1.23463 0.97078 0.97939 0.98667 1.23094 0.94064
0.92018 0.95130 0.88888 1.60021 1.20753 1.06760 1.41253 1.21712
0.97291 0.94746 0.94506 1.19835 0.84196 0.85487 0.87968 1.90524
1.57837 1.77768 1.20661 1.41866 1.40907 1.19006 1.18243 1.19714
1.25090 0.96318 1.01837 0.87912 1.25265 0.96849 0.99743 0.96080
1.69611 1.32732 1.37516 1.14470 0.85850 0.79037 0.80515 0.78840
1.20382 1.20941 1.19424 1.24191 0.98898 0.96970 1.02019 1.22874
0.98537 0.96673 0.89571 0.91301 0.91512 0.95448 0.93587 0.90174
0.90283 0.90629 0.88548 0.88370 0.76439 0.88118 0.90918 0.82685
0.89695 0.93849 0.77475 0.91876 0.91275 0.88864 0.90817 0.91595
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.15 9.12 60.07 0.55 0.70 16
2 N -0.54 -4.57 5.44 -239.52 -1.30 -5.87 16
3 C 0.04 0.26 6.73 -2.30 -0.02 0.25 16
4 C -0.13 -0.70 6.53 -24.59 -0.16 -0.86 16
5 C -0.09 -0.65 2.54 -88.80 -0.23 -0.88 16
6 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16
7 C -0.13 -0.77 5.11 -27.88 -0.14 -0.91 16
8 C 0.51 4.64 7.62 -10.99 -0.08 4.55 16
9 O -0.54 -6.90 14.45 5.56 0.08 -6.82 16
10 N -0.71 -5.58 5.26 -53.02 -0.28 -5.86 16
11 C 0.12 1.13 4.32 -67.12 -0.29 0.84 16
12 H 0.10 1.12 7.46 -51.93 -0.39 0.73 16
13 C -0.13 -1.29 7.63 -25.92 -0.20 -1.49 16
14 C 0.07 0.76 4.05 -66.90 -0.27 0.49 16
15 H 0.09 0.94 7.87 -51.93 -0.41 0.53 16
16 N -0.66 -10.15 6.24 -107.13 -0.67 -10.82 16
17 C 0.05 0.86 6.01 -4.98 -0.03 0.83 16
18 C 0.44 10.32 7.82 -10.99 -0.09 10.23 16
19 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16
20 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16
21 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16
22 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16
23 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16
24 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16
25 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16
26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16
29 C -0.18 -1.88 7.50 -25.92 -0.19 -2.07 16
30 C 0.05 0.45 5.49 -2.84 -0.02 0.44 16
31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16
33 H 0.03 0.20 8.10 -51.93 -0.42 -0.22 16
34 H 0.05 0.29 7.78 -51.93 -0.40 -0.12 16
35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16
36 H 0.08 0.41 8.05 -51.93 -0.42 -0.01 16
37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16
38 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16
39 H 0.10 0.47 8.06 -51.93 -0.42 0.05 16
40 H 0.40 2.20 8.70 -40.82 -0.36 1.85 16
41 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16
42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16
43 H 0.35 5.71 7.90 -39.29 -0.31 5.40 16
44 H 0.08 1.33 8.13 -51.92 -0.42 0.91 16
45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
46 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16
47 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16
48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
49 H 0.09 1.00 7.83 -51.93 -0.41 0.60 16
50 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16
51 H 0.07 0.70 7.11 -51.93 -0.37 0.33 16
LS Contribution 411.48 15.07 6.20 6.20
Total: -1.00 -33.38 411.48 -10.43 -43.80
By element:
Atomic # 1 Polarization: 21.82 SS G_CDS: -8.78 Total: 13.04 kcal
Atomic # 6 Polarization: 5.51 SS G_CDS: -1.41 Total: 4.10 kcal
Atomic # 7 Polarization: -58.99 SS G_CDS: -1.59 Total: -60.58 kcal
Atomic # 8 Polarization: -22.73 SS G_CDS: 0.17 Total: -22.56 kcal
Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal
Total LS contribution 6.20 Total: 6.20 kcal
Total: -33.38 -10.43 -43.80 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713173280.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.526 kcal
(2) G-P(sol) polarization free energy of solvation -33.378 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.903 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.329 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds