Wall clock time and date at job start Tue Mar 31 2020 22:20:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46906 * 1
3 3 C 1.47841 * 110.99936 * 2 1
4 4 C 1.54904 * 104.79772 * 213.63794 * 3 2 1
5 5 C 1.55140 * 101.65186 * 37.07058 * 4 3 2
6 6 H 1.09003 * 110.70406 * 82.73336 * 5 4 3
7 7 C 1.53002 * 110.85632 * 205.89523 * 5 4 3
8 8 C 1.50697 * 109.47283 * 180.14275 * 7 5 4
9 9 O 1.21281 * 119.99872 * 359.97438 * 8 7 5
10 10 N 1.34777 * 120.00108 * 180.02562 * 8 7 5
11 11 C 1.46497 * 119.99742 * 179.97438 * 10 8 7
12 12 H 1.09000 * 112.85466 * 23.79835 * 11 10 8
13 13 C 1.53778 * 113.61386 * 154.99753 * 11 10 8
14 14 C 1.53777 * 87.08435 * 89.11377 * 13 11 10
15 15 H 1.09005 * 113.61785 * 270.88778 * 14 13 11
16 16 N 1.46903 * 113.61833 * 140.06533 * 14 13 11
17 17 C 1.46898 * 111.00210 * 155.00284 * 16 14 13
18 18 C 1.50699 * 109.47345 * 180.02562 * 17 16 14
19 19 O 1.21292 * 119.99697 * 359.97438 * 18 17 16
20 20 N 1.34777 * 119.99973 * 180.02562 * 18 17 16
21 21 C 1.37098 * 119.99460 * 179.97438 * 20 18 17
22 22 H 1.07997 * 120.00648 * 359.97438 * 21 20 18
23 23 C 1.38955 * 119.99734 * 180.02562 * 21 20 18
24 24 N 1.31414 * 119.99783 * 359.97438 * 23 21 20
25 25 Si 1.86794 * 120.00113 * 179.97438 * 23 21 20
26 26 H 1.48507 * 109.47386 * 89.99717 * 25 23 21
27 27 H 1.48499 * 109.47022 * 209.99625 * 25 23 21
28 28 H 1.48500 * 109.47124 * 330.00073 * 25 23 21
29 29 C 1.53781 * 87.08144 * 25.43345 * 14 13 11
30 30 C 1.47442 * 110.99635 * 239.15937 * 2 1 3
31 31 H 1.08992 * 109.47459 * 180.83909 * 1 2 3
32 32 H 1.09004 * 109.47040 * 300.84059 * 1 2 3
33 33 H 1.09000 * 109.47033 * 60.84012 * 1 2 3
34 34 H 1.09001 * 110.37711 * 332.46741 * 3 2 1
35 35 H 1.09004 * 110.37276 * 94.80732 * 3 2 1
36 36 H 1.09004 * 110.99081 * 278.97924 * 4 3 2
37 37 H 1.08999 * 110.99293 * 155.16612 * 4 3 2
38 38 H 1.09002 * 109.46957 * 300.14270 * 7 5 4
39 39 H 1.08997 * 109.47026 * 60.13779 * 7 5 4
40 40 H 0.96991 * 119.99974 * 359.97438 * 10 8 7
41 41 H 1.08997 * 113.61773 * 203.66117 * 13 11 10
42 42 H 1.09001 * 113.61812 * 334.56608 * 13 11 10
43 43 H 1.00898 * 110.99923 * 278.95630 * 16 14 13
44 44 H 1.09007 * 109.46795 * 300.00052 * 17 16 14
45 45 H 1.08999 * 109.47600 * 59.99773 * 17 16 14
46 46 H 0.96997 * 120.00395 * 359.97438 * 20 18 17
47 47 H 0.96997 * 120.00041 * 180.02562 * 24 23 21
48 48 H 1.08995 * 113.61464 * 220.02176 * 29 14 13
49 49 H 1.09003 * 113.61397 * 89.11618 * 29 14 13
50 50 H 1.08997 * 109.88581 * 242.66105 * 30 2 1
51 51 H 1.08998 * 109.89094 * 3.85434 * 30 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9989 1.3802 0.0000
4 6 3.3047 1.3027 -0.8296
5 6 2.9158 0.2822 -1.9315
6 1 2.3744 0.7748 -2.7392
7 6 4.1548 -0.4346 -2.4718
8 6 3.7425 -1.4140 -3.5404
9 8 2.5728 -1.5278 -3.8399
10 7 4.6736 -2.1642 -4.1624
11 6 4.2726 -3.1166 -5.2008
12 1 3.3227 -2.8579 -5.6686
13 6 5.3893 -3.4350 -6.2090
14 6 5.8156 -4.5674 -5.2600
15 1 6.5357 -4.2554 -4.5035
16 7 6.2155 -5.7984 -5.9548
17 6 7.1343 -6.5939 -5.1297
18 6 7.5222 -7.8456 -5.8740
19 8 7.0766 -8.0546 -6.9825
20 7 8.3633 -8.7332 -5.3073
21 6 8.7157 -9.8721 -5.9843
22 1 8.3190 -10.0582 -6.9714
23 6 9.5825 -10.7875 -5.4000
24 7 10.0649 -10.5613 -4.1987
25 14 10.0622 -12.3397 -6.3220
26 1 11.2799 -12.0786 -7.1309
27 1 10.3377 -13.4278 -5.3497
28 1 8.9503 -12.7465 -7.2184
29 6 4.3626 -4.5862 -4.7567
30 6 1.9974 -0.7057 -1.1819
31 1 -0.3634 -1.0275 0.0150
32 1 -0.3633 0.5269 0.8824
33 1 -0.3633 0.5007 -0.8974
34 1 1.2890 2.0593 -0.4723
35 1 2.2148 1.7038 1.0183
36 1 4.1302 0.9282 -0.2243
37 1 3.5495 2.2720 -1.2639
38 1 4.8422 0.2975 -2.8956
39 1 4.6483 -0.9689 -1.6600
40 1 5.6090 -2.0734 -3.9226
41 1 5.0205 -3.7880 -7.1720
42 1 6.1313 -2.6421 -6.3037
43 1 5.4081 -6.3410 -6.2226
44 1 8.0280 -6.0084 -4.9136
45 1 6.6423 -6.8641 -4.1953
46 1 8.7194 -8.5662 -4.4207
47 1 10.6703 -11.2001 -3.7909
48 1 4.2756 -4.7226 -3.6788
49 1 3.7130 -5.2540 -5.3226
50 1 2.5697 -1.5784 -0.8675
51 1 1.1755 -1.0119 -1.8291
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713173280.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:20:01
Heat of formation + Delta-G solvation = -76.203562 kcal
Electronic energy + Delta-G solvation = -28486.129767 eV
Core-core repulsion = 24419.467304 eV
Total energy + Delta-G solvation = -4066.662463 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.41418 -40.38418 -39.90390 -39.04021 -36.12303 -35.37528 -34.33907 -33.45953
-33.14096 -30.84253 -28.66697 -28.09202 -26.63764 -26.32222 -25.78518 -23.91822
-22.23112 -21.98602 -21.18401 -20.90026 -20.39284 -19.87150 -18.14483 -17.77185
-17.36377 -16.93170 -16.81934 -16.40052 -16.34074 -16.15010 -15.97187 -15.58681
-15.46121 -15.03388 -14.91924 -14.47102 -14.29336 -14.22357 -13.94192 -13.67767
-13.53409 -13.47720 -13.42667 -13.11130 -12.84111 -12.72184 -12.63709 -12.53338
-12.41623 -12.27100 -12.12325 -12.10865 -11.76447 -11.72224 -11.59119 -11.50775
-11.35319 -10.80209 -10.33016 -10.03761 -10.01256 -9.31983 -9.23200 -8.46762
-5.95462 1.38239 1.42174 1.54747 1.67257 2.05662 2.18265 2.29534
2.95701 3.08420 3.20605 3.45123 3.54742 3.62270 3.69252 3.74310
3.86832 3.97206 4.02061 4.08365 4.32938 4.35244 4.39734 4.45137
4.51506 4.51861 4.55544 4.58481 4.62073 4.68883 4.80762 4.81083
4.85291 4.88860 4.93077 4.97729 5.00914 5.05279 5.11574 5.15003
5.15789 5.37507 5.41055 5.59922 5.93856 5.98428 6.08248 6.17169
6.40045 6.60266 6.60880 7.12787 7.31447 7.56576 8.12069 8.70522
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.022218 B = 0.001552 C = 0.001506
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1259.941395 B =18033.230893 C =18583.138851
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 N -0.552 5.552
3 C 0.035 3.965
4 C -0.117 4.117
5 C -0.090 4.090
6 H 0.066 0.934
7 C -0.122 4.122
8 C 0.509 3.491
9 O -0.582 6.582
10 N -0.702 5.702
11 C 0.127 3.873
12 H 0.086 0.914
13 C -0.123 4.123
14 C 0.069 3.931
15 H 0.114 0.886
16 N -0.671 5.671
17 C 0.065 3.935
18 C 0.435 3.565
19 O -0.625 6.625
20 N -0.573 5.573
21 C -0.336 4.336
22 H 0.078 0.922
23 C -0.012 4.012
24 N -0.919 5.919
25 Si 0.993 3.007
26 H -0.271 1.271
27 H -0.270 1.270
28 H -0.274 1.274
29 C -0.177 4.177
30 C 0.053 3.947
31 H 0.062 0.938
32 H 0.079 0.921
33 H 0.023 0.977
34 H 0.046 0.954
35 H 0.089 0.911
36 H 0.089 0.911
37 H 0.093 0.907
38 H 0.126 0.874
39 H 0.117 0.883
40 H 0.416 0.584
41 H 0.090 0.910
42 H 0.089 0.911
43 H 0.345 0.655
44 H 0.108 0.892
45 H 0.065 0.935
46 H 0.397 0.603
47 H 0.278 0.722
48 H 0.068 0.932
49 H 0.084 0.916
50 H 0.065 0.935
51 H 0.038 0.962
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.063 27.015 10.586 31.052
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 N -0.276 5.276
3 C -0.092 4.092
4 C -0.154 4.154
5 C -0.110 4.110
6 H 0.085 0.915
7 C -0.162 4.162
8 C 0.298 3.702
9 O -0.462 6.462
10 N -0.354 5.354
11 C 0.020 3.980
12 H 0.104 0.896
13 C -0.162 4.162
14 C -0.041 4.041
15 H 0.132 0.868
16 N -0.302 5.302
17 C -0.067 4.067
18 C 0.223 3.777
19 O -0.512 6.512
20 N -0.210 5.210
21 C -0.465 4.465
22 H 0.096 0.904
23 C -0.212 4.212
24 N -0.560 5.560
25 Si 0.816 3.184
26 H -0.196 1.196
27 H -0.195 1.195
28 H -0.199 1.199
29 C -0.218 4.218
30 C -0.075 4.075
31 H 0.081 0.919
32 H 0.098 0.902
33 H 0.042 0.958
34 H 0.065 0.935
35 H 0.107 0.893
36 H 0.108 0.892
37 H 0.111 0.889
38 H 0.144 0.856
39 H 0.135 0.865
40 H 0.254 0.746
41 H 0.109 0.891
42 H 0.108 0.892
43 H 0.164 0.836
44 H 0.126 0.874
45 H 0.083 0.917
46 H 0.231 0.769
47 H 0.087 0.913
48 H 0.087 0.913
49 H 0.103 0.897
50 H 0.083 0.917
51 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -11.393 26.711 9.867 30.670
hybrid contribution -0.342 -1.118 -0.115 1.174
sum -11.735 25.594 9.752 29.797
Atomic orbital electron populations
1.22537 0.87467 1.02010 1.00832 1.63606 1.08471 1.15446 1.40088
1.23163 0.96140 0.88636 1.01296 1.22789 0.97530 0.99422 0.95703
1.22081 0.95388 0.96039 0.97529 0.91518 1.21720 0.99299 0.97912
0.97285 1.21336 0.85297 0.81075 0.82502 1.90696 1.19978 1.69293
1.66244 1.45647 1.11248 1.39746 1.38725 1.21532 0.98911 0.88150
0.89365 0.89615 1.23371 0.97228 0.97667 0.97947 1.23257 0.94655
0.90399 0.95820 0.86830 1.60059 1.20526 1.07550 1.42070 1.21585
0.98792 0.92033 0.94273 1.20974 0.82463 0.86616 0.87642 1.90492
1.58918 1.79000 1.22774 1.41933 1.41675 1.18986 1.18412 1.19673
1.26815 0.98357 1.01701 0.90403 1.26026 0.96139 1.02160 0.96854
1.69666 1.32705 1.38486 1.15162 0.84932 0.78535 0.77063 0.77832
1.19603 1.19523 1.19880 1.24134 0.98370 0.97489 1.01785 1.22783
0.98004 0.97133 0.89548 0.91928 0.90240 0.95826 0.93541 0.89295
0.89248 0.88850 0.85615 0.86519 0.74630 0.89139 0.89237 0.83567
0.87449 0.91735 0.76927 0.91285 0.91334 0.89705 0.91665 0.94292
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.30 9.12 127.69 1.16 1.47 16
2 N -0.55 -9.11 5.44 -911.70 -4.96 -14.08 16
3 C 0.03 0.41 6.73 86.77 0.58 0.99 16
4 C -0.12 -0.99 6.53 31.98 0.21 -0.78 16
5 C -0.09 -1.17 2.54 -9.61 -0.02 -1.19 16
6 H 0.07 1.09 8.04 -2.39 -0.02 1.07 16
7 C -0.12 -1.12 5.11 29.85 0.15 -0.97 16
8 C 0.51 8.51 7.62 87.66 0.67 9.18 16
9 O -0.58 -15.12 14.45 -3.03 -0.04 -15.16 16
10 N -0.70 -9.50 5.26 -440.04 -2.32 -11.82 16
11 C 0.13 2.28 4.32 45.52 0.20 2.47 16
12 H 0.09 1.89 7.46 -2.39 -0.02 1.87 16
13 C -0.12 -2.18 7.63 31.12 0.24 -1.95 16
14 C 0.07 1.39 4.05 45.44 0.18 1.58 16
15 H 0.11 1.87 7.87 -2.38 -0.02 1.85 16
16 N -0.67 -19.97 6.24 -492.84 -3.08 -23.05 16
17 C 0.07 2.14 6.01 85.56 0.51 2.66 16
18 C 0.44 20.52 7.82 87.66 0.69 21.21 16
19 O -0.63 -34.67 15.78 -3.07 -0.05 -34.71 16
20 N -0.57 -29.20 5.29 -306.98 -1.62 -30.82 16
21 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16
22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16
23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16
24 N -0.92 -49.26 13.05 21.67 0.28 -48.98 16
25 Si 0.99 42.84 29.55 68.60 2.03 44.86 16
26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16
27 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16
28 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16
29 C -0.18 -3.52 7.50 31.12 0.23 -3.28 16
30 C 0.05 0.95 5.49 86.65 0.48 1.43 16
31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
32 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16
33 H 0.02 0.36 8.10 -2.39 -0.02 0.34 16
34 H 0.05 0.53 7.78 -2.39 -0.02 0.51 16
35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16
36 H 0.09 0.61 8.05 -2.38 -0.02 0.59 16
37 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16
38 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16
39 H 0.12 0.70 8.06 -2.39 -0.02 0.68 16
40 H 0.42 3.15 8.70 -92.71 -0.81 2.34 16
41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16
42 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16
43 H 0.34 11.15 7.90 -89.70 -0.71 10.44 16
44 H 0.11 3.07 8.13 -2.38 -0.02 3.05 16
45 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16
46 H 0.40 19.08 7.90 -92.71 -0.73 18.34 16
47 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16
48 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16
49 H 0.08 1.83 7.83 -2.39 -0.02 1.82 16
50 H 0.06 1.24 7.77 -2.39 -0.02 1.22 16
51 H 0.04 0.89 7.11 -2.39 -0.02 0.87 16
Total: -1.00 -74.20 411.48 -4.50 -78.70
By element:
Atomic # 1 Polarization: 41.98 SS G_CDS: -1.30 Total: 40.68 kcal
Atomic # 6 Polarization: 7.81 SS G_CDS: 6.56 Total: 14.37 kcal
Atomic # 7 Polarization: -117.05 SS G_CDS: -11.70 Total: -128.75 kcal
Atomic # 8 Polarization: -49.79 SS G_CDS: -0.09 Total: -49.88 kcal
Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal
Total: -74.20 -4.50 -78.70 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713173280.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.498 kcal
(2) G-P(sol) polarization free energy of solvation -74.202 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.704 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.500 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.701 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.204 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds