Wall clock time and date at job start Tue Mar 31 2020 22:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21278 * 119.99696 * 2 1 4 4 N 1.34781 * 119.99674 * 179.97438 * 2 1 3 5 5 C 1.47062 * 136.05800 * 359.62955 * 4 2 1 6 6 C 1.53762 * 87.88591 * 152.96214 * 5 4 2 7 7 C 1.50699 * 114.26501 * 139.78894 * 6 5 4 8 8 O 1.21275 * 120.00344 * 266.47427 * 7 6 5 9 9 N 1.34782 * 119.99552 * 86.47718 * 7 6 5 10 10 C 1.46502 * 119.99585 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.46894 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46906 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.46864 * 179.97438 * 12 11 10 14 14 C 1.46903 * 111.00325 * 294.30313 * 13 12 11 15 15 C 1.53238 * 109.34203 * 172.74484 * 14 13 12 16 16 N 1.47085 * 108.52059 * 53.83326 * 15 14 13 17 17 C 1.36931 * 120.88514 * 128.83625 * 16 15 14 18 18 H 1.08004 * 119.99800 * 333.48592 * 17 16 15 19 19 C 1.38805 * 120.00432 * 153.48596 * 17 16 15 20 20 N 1.31613 * 120.00192 * 159.44293 * 19 17 16 21 21 Si 1.86807 * 119.99931 * 339.44179 * 19 17 16 22 22 H 1.48504 * 109.46914 * 91.97604 * 21 19 17 23 23 H 1.48498 * 109.47317 * 211.97631 * 21 19 17 24 24 H 1.48503 * 109.47047 * 331.97794 * 21 19 17 25 25 C 1.47078 * 118.23355 * 308.81413 * 16 15 14 26 26 C 1.46899 * 111.00217 * 170.00450 * 13 12 11 27 27 C 1.47059 * 136.05474 * 180.02562 * 4 2 1 28 28 H 1.09003 * 109.46701 * 270.00234 * 1 2 3 29 29 H 1.08992 * 109.46873 * 150.00488 * 1 2 3 30 30 H 1.08994 * 109.46721 * 30.00058 * 1 2 3 31 31 H 1.08999 * 113.46971 * 267.69191 * 5 4 2 32 32 H 1.08999 * 113.46624 * 38.13770 * 5 4 2 33 33 H 1.08995 * 114.39384 * 272.67873 * 6 5 4 34 34 H 0.96993 * 120.00261 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.47434 * 300.00097 * 10 9 7 36 36 H 1.09002 * 109.47345 * 60.00317 * 10 9 7 37 37 H 1.09004 * 109.46898 * 300.00105 * 11 10 9 38 38 H 1.09002 * 109.47127 * 59.99864 * 11 10 9 39 39 H 1.08995 * 109.47296 * 299.99740 * 12 11 10 40 40 H 1.09001 * 109.46865 * 60.00434 * 12 11 10 41 41 H 1.09000 * 109.49249 * 292.70819 * 14 13 12 42 42 H 1.09001 * 109.49031 * 52.78620 * 14 13 12 43 43 H 1.08994 * 109.63123 * 294.12358 * 15 14 13 44 44 H 1.08997 * 109.62763 * 173.53581 * 15 14 13 45 45 H 0.97008 * 120.00132 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.63311 * 291.47189 * 25 16 15 47 47 H 1.09004 * 109.79092 * 170.99060 * 25 16 15 48 48 H 1.09004 * 109.48878 * 307.20978 * 26 13 12 49 49 H 1.08997 * 109.49398 * 67.28791 * 26 13 12 50 50 H 1.09002 * 113.46686 * 321.86655 * 27 4 2 51 51 H 1.09001 * 113.46863 * 92.24588 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.8265 -2.5945 0.0078 6 6 3.1646 -2.8719 -0.6972 7 6 3.8799 -4.1038 -0.2056 8 8 4.7142 -4.0118 0.6698 9 7 3.5925 -5.3078 -0.7388 10 6 4.2883 -6.5053 -0.2613 11 6 3.7802 -7.7294 -1.0259 12 6 4.5073 -8.9799 -0.5276 13 7 4.0191 -10.1551 -1.2613 14 6 2.6066 -10.4179 -0.9547 15 6 2.0873 -11.5319 -1.8699 16 7 2.9783 -12.6951 -1.7418 17 6 2.4740 -13.9415 -1.4824 18 1 1.5344 -14.0459 -0.9602 19 6 3.1704 -15.0707 -1.8905 20 7 2.9325 -16.2326 -1.3199 21 14 4.4453 -14.9414 -3.2498 22 1 5.7814 -14.6888 -2.6528 23 1 4.4791 -16.2109 -4.0193 24 1 4.0891 -13.8215 -4.1576 25 6 4.4252 -12.4841 -1.9002 26 6 4.8524 -11.3326 -0.9839 27 6 3.5941 -1.5741 0.0012 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 -0.8900 -0.5137 30 1 -0.3632 0.8899 -0.5138 31 1 1.7666 -3.0219 1.0087 32 1 0.9553 -2.8285 -0.6040 33 1 3.1236 -2.8024 -1.7842 34 1 2.9255 -5.3813 -1.4392 35 1 5.3599 -6.3932 -0.4265 36 1 4.0967 -6.6365 0.8037 37 1 2.7086 -7.8417 -0.8610 38 1 3.9721 -7.5980 -2.0908 39 1 5.5788 -8.8673 -0.6929 40 1 4.3157 -9.1115 0.5373 41 1 2.5120 -10.7283 0.0859 42 1 2.0242 -9.5113 -1.1187 43 1 2.0841 -11.1851 -2.9032 44 1 1.0768 -11.8101 -1.5708 45 1 3.4195 -17.0218 -1.6048 46 1 4.6468 -12.2289 -2.9365 47 1 4.9629 -13.3910 -1.6236 48 1 5.8987 -11.0895 -1.1691 49 1 4.7266 -11.6302 0.0571 50 1 4.2290 -0.9385 -0.6161 51 1 4.0001 -1.7316 1.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713798406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:54 Heat of formation + Delta-G solvation = 3.418177 kcal Electronic energy + Delta-G solvation = -28657.046344 eV Core-core repulsion = 24593.836538 eV Total energy + Delta-G solvation = -4063.209806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.41169 -39.65531 -38.61569 -37.95448 -36.05679 -34.60892 -32.25674 -31.70490 -31.03849 -30.41362 -29.26751 -27.20788 -26.58622 -25.07775 -23.67057 -23.27264 -22.23277 -21.47219 -20.46020 -19.56992 -19.45849 -18.05748 -17.49839 -16.96206 -16.58362 -16.29291 -15.96551 -15.83479 -15.39038 -15.15373 -14.78654 -14.42419 -14.33464 -14.10573 -13.98137 -13.66105 -13.58852 -13.42739 -13.16705 -13.04672 -12.94347 -12.57859 -12.49984 -12.35652 -12.32441 -11.75559 -11.70773 -11.66152 -11.41054 -11.12353 -10.90070 -10.59330 -10.54142 -10.34500 -10.20925 -10.09664 -9.82904 -9.50559 -9.48281 -9.32701 -8.68044 -8.06895 -6.99187 -5.97071 -3.32536 2.04845 2.08508 2.16720 2.76517 3.30332 3.47504 3.51386 3.55111 3.86346 4.06876 4.17788 4.35443 4.46186 4.51295 4.60797 4.70885 4.72639 4.84478 4.86388 4.87190 4.93712 4.98655 5.06354 5.10011 5.29827 5.32452 5.33268 5.42452 5.44567 5.55140 5.63304 5.68788 5.82252 5.90630 5.94227 6.01919 6.02377 6.06264 6.18998 6.35242 6.53530 6.61146 6.83851 7.00764 7.11566 7.35951 7.40122 7.59955 7.73376 7.91598 8.29896 8.90483 9.69428 10.08599 11.18883 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.030750 B = 0.001569 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.364605 B =17839.427072 C =18337.722592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.541 3.459 3 O -0.543 6.543 4 N -0.651 5.651 5 C 0.119 3.881 6 C -0.155 4.155 7 C 0.526 3.474 8 O -0.533 6.533 9 N -0.723 5.723 10 C 0.119 3.881 11 C -0.128 4.128 12 C 0.058 3.942 13 N -0.535 5.535 14 C 0.039 3.961 15 C 0.152 3.848 16 N -0.608 5.608 17 C -0.260 4.260 18 H 0.085 0.915 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.884 3.116 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.130 3.870 26 C 0.044 3.956 27 C 0.124 3.876 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.130 0.870 34 H 0.403 0.597 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.032 0.968 42 H 0.067 0.933 43 H 0.029 0.971 44 H 0.064 0.936 45 H 0.263 0.737 46 H 0.032 0.968 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.036 0.964 50 H 0.085 0.915 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 28.126 0.928 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.332 3.668 3 O -0.420 6.420 4 N -0.388 5.388 5 C -0.004 4.004 6 C -0.177 4.177 7 C 0.310 3.690 8 O -0.410 6.410 9 N -0.375 5.375 10 C -0.005 4.005 11 C -0.166 4.166 12 C -0.071 4.071 13 N -0.260 5.260 14 C -0.090 4.090 15 C 0.025 3.975 16 N -0.332 5.332 17 C -0.388 4.388 18 H 0.103 0.897 19 C -0.177 4.177 20 N -0.552 5.552 21 Si 0.715 3.285 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.004 3.996 26 C -0.086 4.086 27 C 0.002 3.998 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.148 0.852 34 H 0.238 0.762 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.054 0.946 50 H 0.104 0.896 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.320 28.871 1.077 28.984 hybrid contribution 0.386 -0.460 -0.212 0.637 sum -1.934 28.411 0.865 28.490 Atomic orbital electron populations 1.21845 0.90750 1.05023 1.04972 1.20454 0.90194 0.81110 0.74995 1.90754 1.70809 1.30204 1.50207 1.49666 1.09622 1.05453 1.74042 1.22946 0.96524 0.79787 1.01171 1.23217 0.97867 0.93937 1.02712 1.20045 0.82734 0.84079 0.82093 1.90750 1.33338 1.86156 1.30723 1.46017 1.43141 1.06974 1.41329 1.21394 0.97054 0.83191 0.98880 1.21801 1.00971 0.92809 1.00987 1.21951 0.99345 0.90172 0.95657 1.61921 1.03183 1.03998 1.56877 1.22696 0.88474 0.99043 0.98786 1.21003 0.93801 0.86493 0.96162 1.44400 1.00137 1.04939 1.83773 1.18922 1.08109 0.80760 1.31052 0.89718 1.25261 0.98637 0.94988 0.98787 1.69836 1.43806 0.99811 1.41777 0.86944 0.81154 0.76312 0.84119 1.21635 1.23168 1.19481 1.21428 0.85970 0.95721 0.96505 1.22632 0.95838 0.90959 0.99129 1.22821 0.84146 0.90981 1.01888 0.88632 0.90106 0.88607 0.88830 0.89057 0.85218 0.76226 0.91188 0.91327 0.90996 0.90322 0.90892 0.94963 0.94945 0.91447 0.95265 0.91739 0.92767 0.94967 0.90750 0.91620 0.94591 0.89624 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.18 36.01 0.37 -0.30 16 2 C 0.54 4.54 8.19 -10.98 -0.09 4.45 16 3 O -0.54 -7.13 17.88 5.56 0.10 -7.03 16 4 N -0.65 -4.35 3.69 -185.07 -0.68 -5.03 16 5 C 0.12 0.42 7.85 -8.38 -0.07 0.36 16 6 C -0.16 -0.71 4.51 -91.11 -0.41 -1.12 16 7 C 0.53 3.83 7.40 -10.98 -0.08 3.75 16 8 O -0.53 -6.20 15.95 5.56 0.09 -6.11 16 9 N -0.72 -4.22 5.56 -60.29 -0.33 -4.55 16 10 C 0.12 0.90 5.67 -4.04 -0.02 0.88 16 11 C -0.13 -1.04 5.26 -26.73 -0.14 -1.18 16 12 C 0.06 0.65 4.96 -3.83 -0.02 0.63 16 13 N -0.53 -8.04 4.63 -234.33 -1.08 -9.12 16 14 C 0.04 0.60 5.46 -3.70 -0.02 0.58 16 15 C 0.15 2.87 6.69 -3.60 -0.02 2.85 16 16 N -0.61 -14.24 2.82 -172.02 -0.48 -14.73 16 17 C -0.26 -7.19 10.08 -15.06 -0.15 -7.34 16 18 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 19 C 0.02 0.63 5.24 -17.44 -0.09 0.54 16 20 N -0.91 -27.62 13.97 55.49 0.78 -26.84 16 21 Si 0.88 22.17 24.31 -169.99 -4.13 18.04 16 22 H -0.29 -6.94 6.58 56.52 0.37 -6.57 16 23 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 24 H -0.27 -6.69 6.61 56.52 0.37 -6.32 16 25 C 0.13 2.79 4.35 -3.60 -0.02 2.78 16 26 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 27 C 0.12 0.86 7.96 -8.51 -0.07 0.79 16 28 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.16 7.76 -51.93 -0.40 -0.25 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.09 0.10 7.96 -51.93 -0.41 -0.32 16 33 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.40 1.29 8.47 -40.82 -0.35 0.94 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.57 6.40 -51.93 -0.33 0.23 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.78 7.97 -51.93 -0.41 0.36 16 40 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.82 6.16 -51.93 -0.32 0.50 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.20 7.95 -51.93 -0.41 0.78 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.03 0.71 6.94 -51.93 -0.36 0.35 16 47 H 0.07 1.75 4.61 -51.93 -0.24 1.51 16 48 H 0.07 0.99 7.99 -51.93 -0.41 0.58 16 49 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 51 H 0.10 0.81 7.46 -51.93 -0.39 0.42 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -36.60 402.20 -9.28 -45.88 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -8.73 Total: -4.97 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -0.85 Total: 8.41 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -1.81 Total: -60.27 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.19 Total: -13.14 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.13 Total: 18.04 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.60 -9.28 -45.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713798406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.298 kcal (2) G-P(sol) polarization free energy of solvation -36.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds