Wall clock time and date at job start Tue Mar 31 2020 22:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21278 * 119.99696 * 2 1 4 4 N 1.34781 * 119.99674 * 179.97438 * 2 1 3 5 5 C 1.47062 * 136.05800 * 359.62955 * 4 2 1 6 6 C 1.53762 * 87.88591 * 152.96214 * 5 4 2 7 7 C 1.50699 * 114.26501 * 139.78894 * 6 5 4 8 8 O 1.21275 * 120.00344 * 266.47427 * 7 6 5 9 9 N 1.34782 * 119.99552 * 86.47718 * 7 6 5 10 10 C 1.46502 * 119.99585 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.46894 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46906 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.46864 * 179.97438 * 12 11 10 14 14 C 1.46903 * 111.00325 * 294.30313 * 13 12 11 15 15 C 1.53238 * 109.34203 * 172.74484 * 14 13 12 16 16 N 1.47085 * 108.52059 * 53.83326 * 15 14 13 17 17 C 1.36931 * 120.88514 * 128.83625 * 16 15 14 18 18 H 1.08004 * 119.99800 * 333.48592 * 17 16 15 19 19 C 1.38805 * 120.00432 * 153.48596 * 17 16 15 20 20 N 1.31613 * 120.00192 * 159.44293 * 19 17 16 21 21 Si 1.86807 * 119.99931 * 339.44179 * 19 17 16 22 22 H 1.48504 * 109.46914 * 91.97604 * 21 19 17 23 23 H 1.48498 * 109.47317 * 211.97631 * 21 19 17 24 24 H 1.48503 * 109.47047 * 331.97794 * 21 19 17 25 25 C 1.47078 * 118.23355 * 308.81413 * 16 15 14 26 26 C 1.46899 * 111.00217 * 170.00450 * 13 12 11 27 27 C 1.47059 * 136.05474 * 180.02562 * 4 2 1 28 28 H 1.09003 * 109.46701 * 270.00234 * 1 2 3 29 29 H 1.08992 * 109.46873 * 150.00488 * 1 2 3 30 30 H 1.08994 * 109.46721 * 30.00058 * 1 2 3 31 31 H 1.08999 * 113.46971 * 267.69191 * 5 4 2 32 32 H 1.08999 * 113.46624 * 38.13770 * 5 4 2 33 33 H 1.08995 * 114.39384 * 272.67873 * 6 5 4 34 34 H 0.96993 * 120.00261 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.47434 * 300.00097 * 10 9 7 36 36 H 1.09002 * 109.47345 * 60.00317 * 10 9 7 37 37 H 1.09004 * 109.46898 * 300.00105 * 11 10 9 38 38 H 1.09002 * 109.47127 * 59.99864 * 11 10 9 39 39 H 1.08995 * 109.47296 * 299.99740 * 12 11 10 40 40 H 1.09001 * 109.46865 * 60.00434 * 12 11 10 41 41 H 1.09000 * 109.49249 * 292.70819 * 14 13 12 42 42 H 1.09001 * 109.49031 * 52.78620 * 14 13 12 43 43 H 1.08994 * 109.63123 * 294.12358 * 15 14 13 44 44 H 1.08997 * 109.62763 * 173.53581 * 15 14 13 45 45 H 0.97008 * 120.00132 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.63311 * 291.47189 * 25 16 15 47 47 H 1.09004 * 109.79092 * 170.99060 * 25 16 15 48 48 H 1.09004 * 109.48878 * 307.20978 * 26 13 12 49 49 H 1.08997 * 109.49398 * 67.28791 * 26 13 12 50 50 H 1.09002 * 113.46686 * 321.86655 * 27 4 2 51 51 H 1.09001 * 113.46863 * 92.24588 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.8265 -2.5945 0.0078 6 6 3.1646 -2.8719 -0.6972 7 6 3.8799 -4.1038 -0.2056 8 8 4.7142 -4.0118 0.6698 9 7 3.5925 -5.3078 -0.7388 10 6 4.2883 -6.5053 -0.2613 11 6 3.7802 -7.7294 -1.0259 12 6 4.5073 -8.9799 -0.5276 13 7 4.0191 -10.1551 -1.2613 14 6 2.6066 -10.4179 -0.9547 15 6 2.0873 -11.5319 -1.8699 16 7 2.9783 -12.6951 -1.7418 17 6 2.4740 -13.9415 -1.4824 18 1 1.5344 -14.0459 -0.9602 19 6 3.1704 -15.0707 -1.8905 20 7 2.9325 -16.2326 -1.3199 21 14 4.4453 -14.9414 -3.2498 22 1 5.7814 -14.6888 -2.6528 23 1 4.4791 -16.2109 -4.0193 24 1 4.0891 -13.8215 -4.1576 25 6 4.4252 -12.4841 -1.9002 26 6 4.8524 -11.3326 -0.9839 27 6 3.5941 -1.5741 0.0012 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 -0.8900 -0.5137 30 1 -0.3632 0.8899 -0.5138 31 1 1.7666 -3.0219 1.0087 32 1 0.9553 -2.8285 -0.6040 33 1 3.1236 -2.8024 -1.7842 34 1 2.9255 -5.3813 -1.4392 35 1 5.3599 -6.3932 -0.4265 36 1 4.0967 -6.6365 0.8037 37 1 2.7086 -7.8417 -0.8610 38 1 3.9721 -7.5980 -2.0908 39 1 5.5788 -8.8673 -0.6929 40 1 4.3157 -9.1115 0.5373 41 1 2.5120 -10.7283 0.0859 42 1 2.0242 -9.5113 -1.1187 43 1 2.0841 -11.1851 -2.9032 44 1 1.0768 -11.8101 -1.5708 45 1 3.4195 -17.0218 -1.6048 46 1 4.6468 -12.2289 -2.9365 47 1 4.9629 -13.3910 -1.6236 48 1 5.8987 -11.0895 -1.1691 49 1 4.7266 -11.6302 0.0571 50 1 4.2290 -0.9385 -0.6161 51 1 4.0001 -1.7316 1.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713798406.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:53 Heat of formation + Delta-G solvation = -26.288454 kcal Electronic energy + Delta-G solvation = -28658.334520 eV Core-core repulsion = 24593.836538 eV Total energy + Delta-G solvation = -4064.497982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92420 -40.31441 -39.89772 -38.60504 -37.09467 -35.82512 -33.82643 -32.59342 -32.10612 -31.78102 -29.77049 -28.53628 -26.99241 -26.13255 -25.10400 -24.29794 -23.52784 -22.30148 -21.19518 -20.86197 -20.04104 -18.82327 -18.57732 -17.99210 -17.48545 -17.10300 -16.87409 -16.60250 -16.42532 -16.02768 -15.89872 -15.76172 -15.55776 -15.41522 -15.14372 -14.66199 -14.43366 -14.19650 -14.06821 -13.94989 -13.68176 -13.56488 -13.44461 -13.23773 -13.09339 -12.98609 -12.88989 -12.64168 -12.47723 -12.23103 -12.16344 -11.86798 -11.84095 -11.59027 -11.56567 -11.35635 -11.23907 -10.82732 -10.69819 -10.08848 -9.88291 -9.34033 -8.87761 -8.16312 -5.47438 1.30761 1.42755 1.49051 1.52271 1.52571 1.67831 2.23867 2.42288 2.93424 3.08865 3.11207 3.39043 3.48474 3.78728 3.93691 3.98935 4.08422 4.11106 4.20534 4.25187 4.29028 4.32036 4.43980 4.45286 4.50768 4.53798 4.59051 4.59648 4.63656 4.65067 4.68453 4.70642 4.79283 4.84780 4.86353 5.00058 5.02076 5.04930 5.08418 5.23071 5.29547 5.34640 5.47564 5.83675 6.09632 6.13427 6.26049 6.54821 6.62931 6.91097 7.01884 7.24210 7.62397 8.04792 9.03507 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.030750 B = 0.001569 C = 0.001527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.364605 B =17839.427072 C =18337.722592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.531 3.469 3 O -0.605 6.605 4 N -0.652 5.652 5 C 0.127 3.873 6 C -0.136 4.136 7 C 0.527 3.473 8 O -0.582 6.582 9 N -0.709 5.709 10 C 0.125 3.875 11 C -0.112 4.112 12 C 0.056 3.944 13 N -0.537 5.537 14 C 0.050 3.950 15 C 0.144 3.856 16 N -0.624 5.624 17 C -0.249 4.249 18 H 0.052 0.948 19 C -0.037 4.037 20 N -0.958 5.958 21 Si 0.949 3.051 22 H -0.274 1.274 23 H -0.312 1.312 24 H -0.262 1.262 25 C 0.124 3.876 26 C 0.053 3.947 27 C 0.109 3.891 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.158 0.842 34 H 0.420 0.580 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.030 0.970 41 H 0.017 0.983 42 H 0.109 0.891 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.261 0.739 46 H 0.036 0.964 47 H 0.050 0.950 48 H 0.092 0.908 49 H 0.021 0.979 50 H 0.075 0.925 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 30.000 -0.588 30.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.324 3.676 3 O -0.486 6.486 4 N -0.387 5.387 5 C 0.004 3.996 6 C -0.157 4.157 7 C 0.313 3.687 8 O -0.462 6.462 9 N -0.361 5.361 10 C 0.001 3.999 11 C -0.150 4.150 12 C -0.072 4.072 13 N -0.261 5.261 14 C -0.079 4.079 15 C 0.019 3.981 16 N -0.350 5.350 17 C -0.379 4.379 18 H 0.070 0.930 19 C -0.231 4.231 20 N -0.604 5.604 21 Si 0.778 3.222 22 H -0.200 1.200 23 H -0.241 1.241 24 H -0.187 1.187 25 C -0.001 4.001 26 C -0.077 4.077 27 C -0.014 4.014 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.149 0.851 33 H 0.176 0.824 34 H 0.258 0.742 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.048 0.952 41 H 0.035 0.965 42 H 0.127 0.873 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.039 0.961 50 H 0.094 0.906 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.013 30.759 -0.469 30.909 hybrid contribution 0.560 -1.011 0.328 1.202 sum -2.453 29.747 -0.140 29.849 Atomic orbital electron populations 1.21871 0.87132 1.06486 1.06176 1.21333 0.91911 0.80552 0.73793 1.90720 1.72286 1.32452 1.53168 1.49787 1.09549 1.06583 1.72762 1.23129 0.97251 0.77283 1.01903 1.23148 0.97691 0.90955 1.03936 1.20431 0.82050 0.84966 0.81243 1.90743 1.35632 1.86839 1.33004 1.45856 1.42950 1.05993 1.41254 1.21199 0.96712 0.83669 0.98358 1.21637 1.01016 0.91181 1.01157 1.22050 1.00264 0.89607 0.95267 1.61908 1.02593 1.04007 1.57634 1.22565 0.89348 0.99255 0.96717 1.21226 0.93184 0.86049 0.97605 1.44560 1.01733 1.04598 1.84063 1.18885 1.06707 0.82899 1.29361 0.92987 1.25890 1.01555 0.94683 1.01002 1.69968 1.46150 1.00686 1.43639 0.85888 0.79504 0.75816 0.80976 1.20020 1.24060 1.18683 1.21446 0.84595 0.96516 0.97546 1.22425 0.97642 0.90647 0.96991 1.22852 0.84718 0.92594 1.01282 0.87378 0.87112 0.88662 0.88747 0.85068 0.82425 0.74193 0.92168 0.92291 0.89957 0.89577 0.90083 0.95163 0.96497 0.87295 0.94283 0.92175 0.92998 0.94622 0.93156 0.88969 0.96094 0.90614 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 10.18 71.24 0.73 -0.14 16 2 C 0.53 8.43 8.19 87.66 0.72 9.15 16 3 O -0.60 -16.42 17.88 -3.02 -0.05 -16.47 16 4 N -0.65 -7.66 3.69 -857.83 -3.16 -10.82 16 5 C 0.13 0.45 7.85 83.26 0.65 1.10 16 6 C -0.14 -0.85 4.51 -11.11 -0.05 -0.90 16 7 C 0.53 6.46 7.40 87.66 0.65 7.11 16 8 O -0.58 -13.14 15.95 -3.01 -0.05 -13.19 16 9 N -0.71 -5.71 5.56 -463.04 -2.57 -8.28 16 10 C 0.13 1.52 5.67 86.38 0.49 2.01 16 11 C -0.11 -1.33 5.26 30.60 0.16 -1.17 16 12 C 0.06 1.05 4.96 86.30 0.43 1.48 16 13 N -0.54 -14.29 4.63 -895.27 -4.14 -18.43 16 14 C 0.05 1.38 5.46 86.38 0.47 1.85 16 15 C 0.14 5.20 6.69 86.35 0.58 5.78 16 16 N -0.62 -28.82 2.82 -698.14 -1.97 -30.79 16 17 C -0.25 -14.01 10.08 84.03 0.85 -13.16 16 18 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 19 C -0.04 -2.13 5.24 84.86 0.44 -1.69 16 20 N -0.96 -60.00 13.97 21.65 0.30 -59.70 16 21 Si 0.95 46.28 24.31 68.60 1.67 47.95 16 22 H -0.27 -12.53 6.58 99.48 0.65 -11.87 16 23 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 24 H -0.26 -12.30 6.61 99.48 0.66 -11.64 16 25 C 0.12 5.15 4.35 86.35 0.38 5.53 16 26 C 0.05 1.70 5.62 86.38 0.49 2.18 16 27 C 0.11 1.47 7.96 83.18 0.66 2.13 16 28 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.11 -0.07 7.76 -2.39 -0.02 -0.09 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.39 8.10 -2.39 -0.02 0.37 16 32 H 0.13 -0.49 7.96 -2.39 -0.02 -0.51 16 33 H 0.16 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.42 0.61 8.47 -92.71 -0.79 -0.18 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.85 6.40 -2.39 -0.02 0.83 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.43 7.97 -2.39 -0.02 1.41 16 40 H 0.03 0.60 8.12 -2.39 -0.02 0.58 16 41 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.11 2.13 6.16 -2.39 -0.01 2.11 16 43 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.06 2.18 7.95 -2.39 -0.02 2.16 16 45 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 46 H 0.04 1.47 6.94 -2.39 -0.02 1.45 16 47 H 0.05 2.32 4.61 -2.38 -0.01 2.31 16 48 H 0.09 2.50 7.99 -2.38 -0.02 2.48 16 49 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.08 1.41 7.46 -2.39 -0.02 1.40 16 Total: -1.00 -84.82 402.20 -2.30 -87.12 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: 0.04 Total: 1.37 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 7.64 Total: 21.25 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -11.55 Total: -128.03 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.10 Total: -29.66 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.67 Total: 47.95 kcal Total: -84.82 -2.30 -87.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713798406.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.832 kcal (2) G-P(sol) polarization free energy of solvation -84.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds