Wall clock time and date at job start Tue Mar 31 2020 22:25:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.46008 * 118.54022 * 2 1
4 4 C 1.52972 * 110.04356 * 161.81409 * 3 2 1
5 5 N 1.47185 * 108.74387 * 50.28219 * 4 3 2
6 6 C 1.46897 * 110.99812 * 167.64718 * 5 4 3
7 7 C 1.50709 * 109.46884 * 188.93568 * 6 5 4
8 8 O 1.21283 * 119.99917 * 359.97438 * 7 6 5
9 9 N 1.34773 * 120.00097 * 179.97438 * 7 6 5
10 10 C 1.46500 * 120.00219 * 179.97438 * 9 7 6
11 11 C 1.53002 * 109.47268 * 179.97438 * 10 9 7
12 12 H 1.08996 * 109.58523 * 300.29448 * 11 10 9
13 13 C 1.53189 * 109.58480 * 180.02562 * 11 10 9
14 14 C 1.53045 * 109.31156 * 185.43894 * 13 11 10
15 15 C 1.53033 * 109.53976 * 61.36154 * 14 13 11
16 16 C 1.53194 * 109.31342 * 298.63913 * 15 14 13
17 17 N 1.46923 * 108.89390 * 54.56642 * 16 15 14
18 18 C 1.36935 * 120.63191 * 126.47039 * 17 16 15
19 19 H 1.08001 * 119.99682 * 210.92534 * 18 17 16
20 20 C 1.38805 * 120.00281 * 30.92525 * 18 17 16
21 21 N 1.31620 * 119.99919 * 14.19147 * 20 18 17
22 22 Si 1.86799 * 120.00064 * 194.18918 * 20 18 17
23 23 H 1.48511 * 109.46944 * 90.00095 * 22 20 18
24 24 H 1.48498 * 109.47395 * 210.00088 * 22 20 18
25 25 H 1.48499 * 109.47448 * 330.00509 * 22 20 18
26 26 C 1.46905 * 110.17262 * 291.01237 * 5 4 3
27 27 C 1.33721 * 118.53680 * 179.97438 * 2 1 3
28 28 O 1.21287 * 118.61875 * 1.70494 * 27 2 1
29 29 H 1.08996 * 109.47638 * 180.02562 * 1 2 3
30 30 H 1.09006 * 109.47160 * 300.02044 * 1 2 3
31 31 H 1.09001 * 109.47167 * 60.01893 * 1 2 3
32 32 H 1.08991 * 109.37580 * 281.99198 * 3 2 1
33 33 H 1.08998 * 109.37155 * 41.76061 * 3 2 1
34 34 H 1.09006 * 109.57538 * 290.50749 * 4 3 2
35 35 H 1.08999 * 109.59787 * 170.06591 * 4 3 2
36 36 H 1.08994 * 109.47583 * 68.94147 * 6 5 4
37 37 H 1.08997 * 109.47356 * 308.93582 * 6 5 4
38 38 H 0.97004 * 119.99953 * 359.97438 * 9 7 6
39 39 H 1.09004 * 109.46493 * 60.00164 * 10 9 7
40 40 H 1.08997 * 109.47083 * 300.00390 * 10 9 7
41 41 H 1.08996 * 109.50043 * 65.48473 * 13 11 10
42 42 H 1.09008 * 109.49639 * 305.38596 * 13 11 10
43 43 H 1.09006 * 109.45381 * 301.34162 * 14 13 11
44 44 H 1.08999 * 109.44663 * 181.38228 * 14 13 11
45 45 H 1.09000 * 109.49920 * 178.68105 * 15 14 13
46 46 H 1.09008 * 109.49892 * 58.58571 * 15 14 13
47 47 H 1.09005 * 109.58231 * 174.42090 * 16 15 14
48 48 H 1.08992 * 109.58556 * 294.70003 * 16 15 14
49 49 H 0.97003 * 119.99605 * 179.97438 * 21 20 18
50 50 H 1.08995 * 109.38278 * 170.45203 * 26 5 4
51 51 H 1.09001 * 109.38748 * 290.14165 * 26 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1626 1.2827 0.0000
4 6 3.6124 1.0909 0.4485
5 7 4.2097 -0.0018 -0.3361
6 6 5.6678 -0.0390 -0.1618
7 6 6.2657 -1.0178 -1.1394
8 8 5.5477 -1.6250 -1.9055
9 7 7.5982 -1.2185 -1.1624
10 6 8.1794 -2.1704 -2.1123
11 6 9.6982 -2.2082 -1.9318
12 1 10.1119 -1.2154 -2.1083
13 6 10.3087 -3.2025 -2.9245
14 6 11.8081 -3.3369 -2.6487
15 6 12.0218 -3.8756 -1.2323
16 6 11.4306 -2.8889 -0.2205
17 7 10.0243 -2.6393 -0.5652
18 6 9.0366 -2.8085 0.3680
19 1 8.0488 -3.1170 0.0589
20 6 9.3048 -2.5835 1.7112
21 7 10.4015 -1.9479 2.0658
22 14 8.1093 -3.1825 3.0155
23 1 8.4773 -4.5607 3.4287
24 1 8.1687 -2.2802 4.1934
25 1 6.7316 -3.1833 2.4614
26 6 3.6017 -1.2855 0.0387
27 6 2.1038 -1.1748 0.0005
28 8 1.4464 -2.1935 -0.0307
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3634 0.5142 0.8898
31 1 -0.3633 0.5135 -0.8902
32 1 2.1476 1.7024 -1.0057
33 1 1.6615 1.9667 0.6848
34 1 3.6363 0.8357 1.5080
35 1 4.1722 2.0108 0.2792
36 1 5.9044 -0.3511 0.8553
37 1 6.0808 0.9533 -0.3427
38 1 8.1725 -0.7326 -0.5500
39 1 7.9423 -1.8589 -3.1297
40 1 7.7667 -3.1628 -1.9307
41 1 10.1568 -2.8410 -3.9415
42 1 9.8288 -4.1742 -2.8077
43 1 12.2833 -2.3603 -2.7414
44 1 12.2494 -4.0253 -3.3695
45 1 13.0891 -3.9932 -1.0449
46 1 11.5257 -4.8410 -1.1315
47 1 11.4914 -3.3130 0.7818
48 1 11.9872 -1.9524 -0.2553
49 1 10.5887 -1.7904 3.0044
50 1 3.9254 -2.0568 -0.6601
51 1 3.9190 -1.5558 1.0459
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001714108793.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:25:13
Heat of formation + Delta-G solvation = -30.076183 kcal
Electronic energy + Delta-G solvation = -31151.138345 eV
Core-core repulsion = 27086.476115 eV
Total energy + Delta-G solvation = -4064.662230 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-40.58309 -39.25581 -37.87228 -36.93821 -35.25644 -34.10777 -33.11258 -31.05115
-30.23716 -29.95573 -29.30926 -26.90781 -25.75285 -24.93521 -24.22980 -22.60154
-22.16903 -20.71900 -19.83749 -19.10538 -18.72996 -17.38913 -16.89431 -16.63124
-16.19998 -16.01458 -15.62512 -15.32730 -14.95785 -14.62264 -14.29726 -14.04988
-13.99162 -13.83740 -13.46626 -13.34599 -13.06850 -12.90959 -12.70445 -12.53156
-12.38686 -12.27892 -12.04426 -12.01482 -11.89127 -11.54487 -11.37792 -11.14166
-10.98395 -10.84768 -10.57805 -10.32355 -10.17786 -10.03705 -9.86800 -9.57885
-9.47429 -9.23558 -8.85566 -8.62997 -8.51233 -8.21542 -6.71707 -5.90024
-3.35975 2.60362 2.88061 3.16999 3.26119 3.34645 3.36946 3.38123
4.04917 4.36569 4.44261 4.54399 4.90540 4.96533 5.17200 5.19173
5.22830 5.26544 5.28352 5.32233 5.38569 5.45460 5.48489 5.50322
5.61885 5.66057 5.66652 5.68328 5.86015 5.94711 6.03275 6.13696
6.23443 6.29058 6.34056 6.39547 6.57540 6.62449 6.68022 6.70709
6.77503 6.83038 6.95771 7.17161 7.29913 7.34304 7.60751 7.73358
8.10508 8.24520 8.35043 8.86253 9.10569 9.72406 10.30811 11.16773
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.014977 B = 0.003252 C = 0.002928
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1869.142412 B = 8609.057804 C = 9560.071050
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.073 3.927
2 N -0.611 5.611
3 C 0.123 3.877
4 C 0.031 3.969
5 N -0.512 5.512
6 C 0.033 3.967
7 C 0.508 3.492
8 O -0.547 6.547
9 N -0.694 5.694
10 C 0.136 3.864
11 C 0.161 3.839
12 H 0.032 0.968
13 C -0.128 4.128
14 C -0.107 4.107
15 C -0.144 4.144
16 C 0.173 3.827
17 N -0.588 5.588
18 C -0.249 4.249
19 H 0.070 0.930
20 C 0.008 3.992
21 N -0.899 5.899
22 Si 0.890 3.110
23 H -0.286 1.286
24 H -0.291 1.291
25 H -0.279 1.279
26 C 0.033 3.967
27 C 0.528 3.472
28 O -0.551 6.551
29 H 0.089 0.911
30 H 0.057 0.943
31 H 0.059 0.941
32 H 0.075 0.925
33 H 0.079 0.921
34 H 0.047 0.953
35 H 0.099 0.901
36 H 0.071 0.929
37 H 0.107 0.893
38 H 0.414 0.586
39 H 0.055 0.945
40 H 0.065 0.935
41 H 0.051 0.949
42 H 0.060 0.940
43 H 0.052 0.948
44 H 0.044 0.956
45 H 0.046 0.954
46 H 0.053 0.947
47 H 0.084 0.916
48 H 0.018 0.982
49 H 0.254 0.746
50 H 0.137 0.863
51 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.306 8.932 -3.871 12.797
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 N -0.345 5.345
3 C 0.000 4.000
4 C -0.097 4.097
5 N -0.238 5.238
6 C -0.097 4.097
7 C 0.293 3.707
8 O -0.426 6.426
9 N -0.345 5.345
10 C 0.012 3.988
11 C 0.054 3.946
12 H 0.049 0.951
13 C -0.168 4.168
14 C -0.145 4.145
15 C -0.184 4.184
16 C 0.048 3.952
17 N -0.312 5.312
18 C -0.379 4.379
19 H 0.088 0.912
20 C -0.191 4.191
21 N -0.543 5.543
22 Si 0.720 3.280
23 H -0.213 1.213
24 H -0.218 1.218
25 H -0.205 1.205
26 C -0.097 4.097
27 C 0.317 3.683
28 O -0.428 6.428
29 H 0.108 0.892
30 H 0.076 0.924
31 H 0.077 0.923
32 H 0.093 0.907
33 H 0.097 0.903
34 H 0.065 0.935
35 H 0.118 0.882
36 H 0.089 0.911
37 H 0.125 0.875
38 H 0.252 0.748
39 H 0.073 0.927
40 H 0.083 0.917
41 H 0.070 0.930
42 H 0.079 0.921
43 H 0.071 0.929
44 H 0.063 0.937
45 H 0.065 0.935
46 H 0.071 0.929
47 H 0.102 0.898
48 H 0.036 0.964
49 H 0.064 0.936
50 H 0.155 0.845
51 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -9.187 8.104 -4.756 13.141
hybrid contribution 0.063 -0.150 2.028 2.034
sum -9.124 7.953 -2.728 12.407
Atomic orbital electron populations
1.21712 0.79685 1.04510 1.01028 1.47318 1.07216 1.06316 1.73686
1.21474 0.91522 0.84740 1.02297 1.22567 0.94789 0.96338 0.96023
1.62205 1.03504 1.03169 1.54940 1.22059 0.87669 1.01067 0.98955
1.20192 0.82753 0.83330 0.84421 1.90626 1.60301 1.49871 1.41825
1.45952 1.06608 1.43241 1.38715 1.21264 0.93321 0.93233 0.90948
1.20728 0.91427 0.95131 0.87313 0.95071 1.21943 0.96291 1.00521
0.98003 1.21362 0.95893 1.00069 0.97182 1.22194 0.99154 1.00775
0.96244 1.20749 0.83337 0.94300 0.96840 1.44075 1.03346 1.77855
1.05944 1.19212 0.92968 1.39042 0.86664 0.91218 1.25045 0.97480
0.98695 0.97878 1.70008 1.26330 1.42018 1.15951 0.86486 0.80975
0.78716 0.81788 1.21316 1.21773 1.20477 1.22539 0.89698 0.94509
1.02942 1.20200 0.90419 0.82842 0.74831 1.90696 1.66816 1.34679
1.50651 0.89234 0.92403 0.92265 0.90719 0.90304 0.93468 0.88226
0.91073 0.87471 0.74843 0.92653 0.91663 0.93000 0.92092 0.92877
0.93719 0.93531 0.92850 0.89822 0.96358 0.93622 0.84515 0.91298
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.72 10.55 59.85 0.63 1.35 16
2 N -0.61 -7.41 3.23 -182.49 -0.59 -8.00 16
3 C 0.12 1.08 6.64 -4.32 -0.03 1.05 16
4 C 0.03 0.30 5.59 -3.68 -0.02 0.28 16
5 N -0.51 -6.93 4.47 -237.56 -1.06 -7.99 16
6 C 0.03 0.46 5.44 -4.97 -0.03 0.43 16
7 C 0.51 8.88 7.59 -10.98 -0.08 8.80 16
8 O -0.55 -11.21 14.31 5.55 0.08 -11.14 16
9 N -0.69 -12.33 3.86 -60.29 -0.23 -12.56 16
10 C 0.14 2.48 4.43 -4.04 -0.02 2.46 16
11 C 0.16 2.99 3.00 -67.58 -0.20 2.78 16
12 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
13 C -0.13 -2.10 5.37 -26.61 -0.14 -2.24 16
14 C -0.11 -1.72 5.88 -26.69 -0.16 -1.88 16
15 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16
16 C 0.17 3.80 5.26 -3.71 -0.02 3.78 16
17 N -0.59 -12.94 2.98 -164.75 -0.49 -13.43 16
18 C -0.25 -5.97 7.02 -15.06 -0.11 -6.07 16
19 H 0.07 1.73 5.86 -52.49 -0.31 1.42 16
20 C 0.01 0.21 4.96 -17.43 -0.09 0.12 16
21 N -0.90 -23.51 11.23 55.49 0.62 -22.89 16
22 Si 0.89 20.39 29.58 -169.99 -5.03 15.36 16
23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
26 C 0.03 0.52 5.14 -5.19 -0.03 0.50 16
27 C 0.53 8.39 7.57 -11.67 -0.09 8.30 16
28 O -0.55 -10.56 16.07 5.55 0.09 -10.47 16
29 H 0.09 1.06 6.67 -51.93 -0.35 0.71 16
30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
33 H 0.08 0.48 8.13 -51.93 -0.42 0.05 16
34 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16
35 H 0.10 0.71 7.91 -51.93 -0.41 0.30 16
36 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16
37 H 0.11 1.17 7.93 -51.93 -0.41 0.76 16
38 H 0.41 7.58 7.42 -40.82 -0.30 7.27 16
39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
40 H 0.07 1.32 7.41 -51.93 -0.38 0.94 16
41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
42 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16
43 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16
44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
46 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16
47 H 0.08 2.08 6.19 -51.93 -0.32 1.76 16
48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
49 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16
50 H 0.14 2.57 6.00 -51.93 -0.31 2.26 16
51 H 0.07 1.06 8.05 -51.93 -0.42 0.65 16
LS Contribution 391.31 15.07 5.90 5.90
Total: -1.00 -30.68 391.31 -9.93 -40.62
By element:
Atomic # 1 Polarization: 16.42 SS G_CDS: -8.68 Total: 7.73 kcal
Atomic # 6 Polarization: 17.41 SS G_CDS: -0.54 Total: 16.87 kcal
Atomic # 7 Polarization: -63.12 SS G_CDS: -1.75 Total: -64.87 kcal
Atomic # 8 Polarization: -21.77 SS G_CDS: 0.17 Total: -21.60 kcal
Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -30.68 -9.93 -40.62 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001714108793.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.540 kcal
(2) G-P(sol) polarization free energy of solvation -30.682 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.142 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds