Wall clock time and date at job start Tue Mar 31 2020 21:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.53004 * 109.47023 * 240.00219 * 2 1 3 5 5 N 1.46499 * 109.47198 * 185.00121 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.54990 * 113.20622 * 61.45206 * 8 6 5 10 10 C 1.54059 * 104.76301 * 146.47543 * 9 8 6 11 11 N 1.48234 * 106.70356 * 1.00684 * 10 9 8 12 12 C 1.48811 * 105.17676 * 332.52411 * 11 10 9 13 13 C 1.47680 * 108.91172 * 88.17080 * 11 10 9 14 14 C 1.52994 * 109.28229 * 312.92254 * 13 11 10 15 15 C 1.54011 * 113.03460 * 299.51202 * 8 6 5 16 16 N 1.46893 * 109.47222 * 120.00518 * 2 1 3 17 17 C 1.46901 * 111.00002 * 274.99677 * 16 2 1 18 18 C 1.50699 * 109.47447 * 179.97438 * 17 16 2 19 19 O 1.21296 * 119.99473 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00376 * 179.97438 * 18 17 16 21 21 C 1.37105 * 120.00236 * 180.02562 * 20 18 17 22 22 H 1.07993 * 119.99775 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99841 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99924 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00154 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47077 * 90.00426 * 25 23 21 27 27 H 1.48497 * 109.46995 * 210.00057 * 25 23 21 28 28 H 1.48494 * 109.47056 * 330.00123 * 25 23 21 29 29 H 1.09005 * 109.47209 * 59.99074 * 1 2 3 30 30 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46778 * 300.00011 * 1 2 3 32 32 H 1.09009 * 109.46730 * 64.99908 * 4 2 1 33 33 H 1.08998 * 109.46846 * 305.00453 * 4 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 35 35 H 1.09002 * 110.37621 * 265.29846 * 9 8 6 36 36 H 1.09000 * 110.37683 * 27.53812 * 9 8 6 37 37 H 1.09000 * 110.01439 * 120.32201 * 10 9 8 38 38 H 1.09000 * 110.00955 * 241.65243 * 10 9 8 39 39 H 1.09005 * 110.92677 * 284.56003 * 12 11 10 40 40 H 1.08990 * 110.93484 * 160.88897 * 12 11 10 41 41 H 1.08999 * 109.50055 * 72.86111 * 13 11 10 42 42 H 1.09000 * 109.50632 * 192.97600 * 13 11 10 43 43 H 1.08996 * 109.36833 * 64.97415 * 14 13 11 44 44 H 1.09008 * 109.36270 * 184.71844 * 14 13 11 45 45 H 1.08999 * 109.63304 * 291.84741 * 15 8 6 46 46 H 1.09005 * 109.63037 * 52.43440 * 15 8 6 47 47 H 1.00897 * 111.00541 * 151.04270 * 16 2 1 48 48 H 1.09001 * 109.47268 * 300.00240 * 17 16 2 49 49 H 1.08998 * 109.47179 * 59.99719 * 17 16 2 50 50 H 0.97005 * 120.00056 * 0.02562 * 20 18 17 51 51 H 0.97002 * 120.00103 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1734 -1.4238 -2.1938 7 8 3.5702 -1.8787 -3.1425 8 6 5.6757 -1.5265 -2.1364 9 6 6.1860 -2.3460 -0.9239 10 6 7.4573 -3.0511 -1.4336 11 7 7.6481 -2.6215 -2.8395 12 6 6.2830 -2.3010 -3.3376 13 6 8.4456 -1.3787 -2.8562 14 6 7.8781 -0.4003 -1.8259 15 6 6.3718 -0.1538 -2.0788 16 7 2.0196 -0.6926 1.1993 17 6 2.0825 0.2224 2.3468 18 6 2.5874 -0.5220 3.5559 19 8 2.8677 -1.6990 3.4700 20 7 2.7284 0.1202 4.7324 21 6 3.1882 -0.5570 5.8323 22 1 3.4378 -1.6049 5.7558 23 6 3.3330 0.1050 7.0453 24 7 3.7742 -0.5439 8.0994 25 14 2.9019 1.9178 7.1774 26 1 1.4725 2.0605 7.5538 27 1 3.7528 2.5546 8.2145 28 1 3.1377 2.5792 5.8690 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7515 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2952 34 1 3.9824 -0.4622 -0.4320 35 1 6.4267 -1.6837 -0.0923 36 1 5.4390 -3.0794 -0.6201 37 1 8.3161 -2.7524 -0.8325 38 1 7.3281 -4.1324 -1.3876 39 1 5.7185 -3.2114 -3.5394 40 1 6.3304 -1.6692 -4.2244 41 1 9.4819 -1.6080 -2.6079 42 1 8.3993 -0.9298 -3.8484 43 1 8.0052 -0.8145 -0.8258 44 1 8.4120 0.5475 -1.8952 45 1 6.2347 0.3664 -3.0268 46 1 5.9473 0.4384 -1.2681 47 1 2.9172 -1.1206 1.0286 48 1 2.7589 1.0461 2.1182 49 1 1.0872 0.6162 2.5525 50 1 2.5045 1.0615 4.8010 51 1 3.8757 -0.0817 8.9462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714295649.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:24 Heat of formation + Delta-G solvation = -56.049139 kcal Electronic energy + Delta-G solvation = -30445.356057 eV Core-core repulsion = 26379.567555 eV Total energy + Delta-G solvation = -4065.788502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.56546 -39.40799 -38.57547 -37.08478 -34.29133 -33.90200 -32.64462 -32.32170 -31.74015 -30.93140 -29.52279 -27.03797 -26.37861 -24.94494 -23.89445 -23.31724 -21.96174 -20.77413 -20.55098 -19.63228 -19.38468 -18.46129 -17.57461 -16.61859 -16.38380 -16.28123 -15.74732 -15.52666 -15.33396 -14.91824 -14.62149 -14.47139 -14.23837 -13.92411 -13.41221 -13.25957 -13.21299 -13.10453 -13.00061 -12.89004 -12.73089 -12.57770 -12.25628 -12.09898 -12.04242 -11.88579 -11.85839 -11.64035 -11.38289 -11.24942 -11.11613 -11.07093 -10.98799 -10.79880 -10.65490 -10.03507 -9.90971 -9.63715 -9.30791 -8.85638 -8.67364 -8.31137 -8.23712 -6.36917 -3.88725 2.38486 2.88087 2.96282 3.01737 3.10177 3.62974 3.65681 3.92457 4.04611 4.12143 4.25144 4.37109 4.52104 4.62232 4.68668 4.69066 4.71507 4.80948 5.00668 5.02705 5.08962 5.13207 5.15677 5.18700 5.31510 5.39918 5.42509 5.48038 5.50547 5.56304 5.60375 5.61337 5.65178 5.67710 5.75339 5.77528 5.83853 5.84161 5.85857 5.86818 6.10400 6.24790 6.43942 6.61503 6.95906 7.20226 7.40686 7.51644 7.97737 8.07986 8.53069 8.88704 9.35880 9.75313 10.76077 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.002831 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.830283 B = 9887.650458 C =11425.449535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.048 0.952 4 C 0.118 3.882 5 N -0.728 5.728 6 C 0.542 3.458 7 O -0.536 6.536 8 C -0.121 4.121 9 C -0.139 4.139 10 C 0.031 3.969 11 N -0.495 5.495 12 C 0.059 3.941 13 C 0.032 3.968 14 C -0.157 4.157 15 C -0.104 4.104 16 N -0.663 5.663 17 C 0.046 3.954 18 C 0.448 3.552 19 O -0.564 6.564 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.398 0.602 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.348 0.652 48 H 0.044 0.956 49 H 0.090 0.910 50 H 0.370 0.630 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.307 5.725 -21.592 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.006 4.006 5 N -0.381 5.381 6 C 0.327 3.673 7 O -0.412 6.412 8 C -0.126 4.126 9 C -0.178 4.178 10 C -0.098 4.098 11 N -0.215 5.215 12 C -0.070 4.070 13 C -0.097 4.097 14 C -0.195 4.195 15 C -0.142 4.142 16 N -0.298 5.298 17 C -0.087 4.087 18 C 0.233 3.767 19 O -0.445 6.445 20 N -0.228 5.228 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.519 5.519 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.233 0.767 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.170 0.830 48 H 0.062 0.938 49 H 0.108 0.892 50 H 0.203 0.797 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.831 3.880 -22.286 22.944 hybrid contribution 0.194 3.012 1.221 3.256 sum 4.025 6.893 -21.065 22.527 Atomic orbital electron populations 1.21738 0.93265 1.03101 1.01548 1.21816 0.97224 0.95834 0.88982 0.93399 1.21625 0.79271 1.02147 0.97573 1.46052 1.08044 1.60283 1.23684 1.19922 0.88494 0.76962 0.81891 1.90702 1.70011 1.47152 1.33338 1.22670 0.91785 0.98683 0.99483 1.22980 0.98767 0.99469 0.96571 1.23080 0.96754 1.00948 0.88989 1.66444 1.11402 1.26711 1.16976 1.23358 0.88621 0.99821 0.95161 1.22616 0.98133 0.89617 0.99292 1.22533 0.95182 1.00800 1.01018 1.22079 0.95219 0.94312 1.02553 1.60104 1.34911 1.32131 1.02681 1.21797 1.01562 0.93879 0.91412 1.19674 0.84743 0.88242 0.84003 1.90577 1.53839 1.15788 1.84344 1.42207 1.60022 1.11014 1.09594 1.19429 1.40397 0.97953 0.85718 0.86263 1.25043 0.97413 0.98416 0.95231 1.69619 1.44873 1.36620 1.00835 0.86674 0.79392 0.84882 0.78420 1.19557 1.20155 1.19589 0.92433 0.91381 0.92016 0.90768 0.90175 0.76668 0.90079 0.90346 0.90457 0.89698 0.88889 0.89885 0.90126 0.90596 0.90698 0.91001 0.91155 0.91184 0.83045 0.93820 0.89232 0.79710 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.41 37.16 0.35 -1.01 16 2 C 0.07 0.75 2.81 -67.72 -0.19 0.56 16 3 H 0.05 0.46 7.80 -51.93 -0.40 0.05 16 4 C 0.12 1.24 5.31 -4.04 -0.02 1.22 16 5 N -0.73 -7.58 4.96 -60.29 -0.30 -7.88 16 6 C 0.54 6.38 6.78 -10.99 -0.07 6.30 16 7 O -0.54 -8.07 16.18 5.55 0.09 -7.98 16 8 C -0.12 -1.16 0.94 -152.87 -0.14 -1.30 16 9 C -0.14 -1.32 5.49 -25.13 -0.14 -1.45 16 10 C 0.03 0.27 6.20 -2.53 -0.02 0.26 16 11 N -0.50 -4.59 6.07 -228.98 -1.39 -5.98 16 12 C 0.06 0.59 5.45 -1.55 -0.01 0.58 16 13 C 0.03 0.24 5.86 -3.40 -0.02 0.22 16 14 C -0.16 -1.10 5.53 -25.84 -0.14 -1.25 16 15 C -0.10 -0.81 5.12 -25.30 -0.13 -0.94 16 16 N -0.66 -9.37 5.92 -107.99 -0.64 -10.01 16 17 C 0.05 0.70 5.96 -4.98 -0.03 0.67 16 18 C 0.45 9.68 7.82 -10.99 -0.09 9.60 16 19 O -0.56 -14.58 15.78 5.54 0.09 -14.49 16 20 N -0.59 -13.49 5.09 -10.96 -0.06 -13.54 16 21 C -0.31 -8.45 10.16 -14.93 -0.15 -8.60 16 22 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.23 13.96 55.50 0.77 -24.46 16 25 Si 0.88 18.83 27.74 -169.99 -4.71 14.11 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.62 7.45 -51.93 -0.39 0.24 16 32 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.40 3.78 7.06 -40.82 -0.29 3.49 16 35 H 0.08 0.73 6.93 -51.93 -0.36 0.37 16 36 H 0.08 0.84 8.00 -51.93 -0.42 0.43 16 37 H 0.08 0.62 6.94 -51.93 -0.36 0.26 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.06 7.94 -51.93 -0.41 0.64 16 40 H 0.08 0.79 7.74 -51.93 -0.40 0.39 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16 43 H 0.07 0.56 5.37 -51.93 -0.28 0.28 16 44 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 45 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 46 H 0.07 0.52 7.83 -51.93 -0.41 0.11 16 47 H 0.35 5.11 6.41 -39.29 -0.25 4.86 16 48 H 0.04 0.56 8.06 -51.93 -0.42 0.15 16 49 H 0.09 1.23 7.44 -51.93 -0.39 0.85 16 50 H 0.37 7.41 5.76 -40.82 -0.24 7.17 16 51 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -33.10 394.18 -9.46 -42.56 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -8.35 Total: 15.84 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -0.90 Total: 5.90 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -1.61 Total: -61.87 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.18 Total: -22.47 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.71 Total: 14.11 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.10 -9.46 -42.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714295649.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.490 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds