Wall clock time and date at job start Tue Mar 31 2020 21:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.53004 * 109.47023 * 240.00219 * 2 1 3 5 5 N 1.46499 * 109.47198 * 185.00121 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.54990 * 113.20622 * 61.45206 * 8 6 5 10 10 C 1.54059 * 104.76301 * 146.47543 * 9 8 6 11 11 N 1.48234 * 106.70356 * 1.00684 * 10 9 8 12 12 C 1.48811 * 105.17676 * 332.52411 * 11 10 9 13 13 C 1.47680 * 108.91172 * 88.17080 * 11 10 9 14 14 C 1.52994 * 109.28229 * 312.92254 * 13 11 10 15 15 C 1.54011 * 113.03460 * 299.51202 * 8 6 5 16 16 N 1.46893 * 109.47222 * 120.00518 * 2 1 3 17 17 C 1.46901 * 111.00002 * 274.99677 * 16 2 1 18 18 C 1.50699 * 109.47447 * 179.97438 * 17 16 2 19 19 O 1.21296 * 119.99473 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00376 * 179.97438 * 18 17 16 21 21 C 1.37105 * 120.00236 * 180.02562 * 20 18 17 22 22 H 1.07993 * 119.99775 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99841 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99924 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00154 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47077 * 90.00426 * 25 23 21 27 27 H 1.48497 * 109.46995 * 210.00057 * 25 23 21 28 28 H 1.48494 * 109.47056 * 330.00123 * 25 23 21 29 29 H 1.09005 * 109.47209 * 59.99074 * 1 2 3 30 30 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46778 * 300.00011 * 1 2 3 32 32 H 1.09009 * 109.46730 * 64.99908 * 4 2 1 33 33 H 1.08998 * 109.46846 * 305.00453 * 4 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 35 35 H 1.09002 * 110.37621 * 265.29846 * 9 8 6 36 36 H 1.09000 * 110.37683 * 27.53812 * 9 8 6 37 37 H 1.09000 * 110.01439 * 120.32201 * 10 9 8 38 38 H 1.09000 * 110.00955 * 241.65243 * 10 9 8 39 39 H 1.09005 * 110.92677 * 284.56003 * 12 11 10 40 40 H 1.08990 * 110.93484 * 160.88897 * 12 11 10 41 41 H 1.08999 * 109.50055 * 72.86111 * 13 11 10 42 42 H 1.09000 * 109.50632 * 192.97600 * 13 11 10 43 43 H 1.08996 * 109.36833 * 64.97415 * 14 13 11 44 44 H 1.09008 * 109.36270 * 184.71844 * 14 13 11 45 45 H 1.08999 * 109.63304 * 291.84741 * 15 8 6 46 46 H 1.09005 * 109.63037 * 52.43440 * 15 8 6 47 47 H 1.00897 * 111.00541 * 151.04270 * 16 2 1 48 48 H 1.09001 * 109.47268 * 300.00240 * 17 16 2 49 49 H 1.08998 * 109.47179 * 59.99719 * 17 16 2 50 50 H 0.97005 * 120.00056 * 0.02562 * 20 18 17 51 51 H 0.97002 * 120.00103 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1734 -1.4238 -2.1938 7 8 3.5702 -1.8787 -3.1425 8 6 5.6757 -1.5265 -2.1364 9 6 6.1860 -2.3460 -0.9239 10 6 7.4573 -3.0511 -1.4336 11 7 7.6481 -2.6215 -2.8395 12 6 6.2830 -2.3010 -3.3376 13 6 8.4456 -1.3787 -2.8562 14 6 7.8781 -0.4003 -1.8259 15 6 6.3718 -0.1538 -2.0788 16 7 2.0196 -0.6926 1.1993 17 6 2.0825 0.2224 2.3468 18 6 2.5874 -0.5220 3.5559 19 8 2.8677 -1.6990 3.4700 20 7 2.7284 0.1202 4.7324 21 6 3.1882 -0.5570 5.8323 22 1 3.4378 -1.6049 5.7558 23 6 3.3330 0.1050 7.0453 24 7 3.7742 -0.5439 8.0994 25 14 2.9019 1.9178 7.1774 26 1 1.4725 2.0605 7.5538 27 1 3.7528 2.5546 8.2145 28 1 3.1377 2.5792 5.8690 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7515 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2952 34 1 3.9824 -0.4622 -0.4320 35 1 6.4267 -1.6837 -0.0923 36 1 5.4390 -3.0794 -0.6201 37 1 8.3161 -2.7524 -0.8325 38 1 7.3281 -4.1324 -1.3876 39 1 5.7185 -3.2114 -3.5394 40 1 6.3304 -1.6692 -4.2244 41 1 9.4819 -1.6080 -2.6079 42 1 8.3993 -0.9298 -3.8484 43 1 8.0052 -0.8145 -0.8258 44 1 8.4120 0.5475 -1.8952 45 1 6.2347 0.3664 -3.0268 46 1 5.9473 0.4384 -1.2681 47 1 2.9172 -1.1206 1.0286 48 1 2.7589 1.0461 2.1182 49 1 1.0872 0.6162 2.5525 50 1 2.5045 1.0615 4.8010 51 1 3.8757 -0.0817 8.9462 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714295649.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:23 Heat of formation + Delta-G solvation = -84.506998 kcal Electronic energy + Delta-G solvation = -30446.590083 eV Core-core repulsion = 26379.567555 eV Total energy + Delta-G solvation = -4067.022527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.33615 -40.50312 -40.04389 -38.20347 -36.02308 -35.11121 -33.76022 -33.40537 -32.97738 -31.94066 -30.28385 -28.29587 -27.50447 -25.71156 -25.43873 -24.09951 -22.76347 -21.67216 -21.33014 -21.25093 -20.44766 -20.15809 -18.51031 -17.73770 -17.29462 -17.22775 -16.98061 -16.85170 -16.45667 -16.20041 -15.66384 -15.57017 -15.26487 -14.99586 -14.88834 -14.45330 -14.25157 -14.09182 -13.97279 -13.77240 -13.67514 -13.61615 -13.48727 -13.33684 -12.97813 -12.84168 -12.72744 -12.59995 -12.55146 -12.40675 -12.11505 -11.97393 -11.89019 -11.82762 -11.67781 -11.53981 -11.50975 -10.82200 -10.43581 -10.24647 -10.22293 -9.55765 -9.39096 -8.40807 -6.01907 1.30221 1.36538 1.45145 1.45997 1.95613 2.02732 2.23519 2.68005 2.90781 3.15700 3.33016 3.39032 3.51123 3.64120 3.67894 3.91856 4.03546 4.05036 4.09493 4.10883 4.18051 4.32927 4.34748 4.41038 4.41255 4.52574 4.55606 4.57877 4.61389 4.74339 4.81642 4.86339 4.90357 4.92321 4.93035 4.98832 5.04187 5.06739 5.11051 5.24166 5.26567 5.44841 5.53159 5.72620 5.89794 5.94934 6.02566 6.30725 6.33464 6.59869 6.88738 7.07345 7.40270 7.96929 8.76811 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.002831 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.830283 B = 9887.650458 C =11425.449535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.080 3.920 3 H 0.075 0.925 4 C 0.121 3.879 5 N -0.720 5.720 6 C 0.539 3.461 7 O -0.574 6.574 8 C -0.117 4.117 9 C -0.136 4.136 10 C 0.031 3.969 11 N -0.504 5.504 12 C 0.060 3.940 13 C 0.030 3.970 14 C -0.152 4.152 15 C -0.100 4.100 16 N -0.684 5.684 17 C 0.060 3.940 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.589 5.589 21 C -0.328 4.328 22 H 0.054 0.946 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.259 1.259 27 H -0.277 1.277 28 H -0.228 1.228 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.405 0.595 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.342 0.658 48 H 0.083 0.917 49 H 0.115 0.885 50 H 0.390 0.610 51 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.083 10.014 -22.795 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.029 4.029 3 H 0.092 0.908 4 C -0.003 4.003 5 N -0.372 5.372 6 C 0.326 3.674 7 O -0.453 6.453 8 C -0.121 4.121 9 C -0.175 4.175 10 C -0.097 4.097 11 N -0.225 5.225 12 C -0.069 4.069 13 C -0.098 4.098 14 C -0.190 4.190 15 C -0.138 4.138 16 N -0.320 5.320 17 C -0.072 4.072 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.231 5.231 21 C -0.457 4.457 22 H 0.072 0.928 23 C -0.214 4.214 24 N -0.576 5.576 25 Si 0.785 3.215 26 H -0.184 1.184 27 H -0.202 1.202 28 H -0.151 1.151 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.241 0.759 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.163 0.837 48 H 0.101 0.899 49 H 0.133 0.867 50 H 0.226 0.774 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.599 8.193 -23.505 25.151 hybrid contribution 0.267 1.498 1.546 2.169 sum 3.866 9.691 -21.959 24.312 Atomic orbital electron populations 1.21759 0.92585 1.02447 1.02825 1.21855 0.97563 0.96532 0.86963 0.90758 1.21598 0.79140 1.01259 0.98313 1.46004 1.08131 1.59597 1.23418 1.20303 0.89384 0.76258 0.81477 1.90682 1.70911 1.48818 1.34898 1.22614 0.90419 0.99999 0.99105 1.22946 0.98522 0.99171 0.96844 1.23075 0.96887 1.00537 0.89196 1.66420 1.11014 1.28083 1.16941 1.23265 0.88989 0.98967 0.95654 1.22698 0.98222 0.88897 0.99956 1.22499 0.94580 1.01411 1.00536 1.22098 0.95576 0.92918 1.03166 1.60098 1.34867 1.33085 1.03911 1.21728 1.03335 0.93736 0.88369 1.20984 0.82328 0.87927 0.85209 1.90562 1.55318 1.18569 1.85390 1.42019 1.60525 1.11770 1.08807 1.18993 1.42403 0.96012 0.88332 0.92754 1.26122 0.96389 1.05016 0.93854 1.69807 1.46291 1.39651 1.01815 0.85369 0.79293 0.76516 0.80354 1.18379 1.20184 1.15075 0.90074 0.93079 0.91792 0.89557 0.92342 0.75869 0.89356 0.92375 0.89185 0.90466 0.91139 0.89427 0.89211 0.89929 0.91031 0.89336 0.90703 0.90325 0.83747 0.89904 0.86703 0.77445 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.41 71.98 0.68 -1.63 16 2 C 0.08 1.44 2.81 44.92 0.13 1.57 16 3 H 0.07 1.02 7.80 -2.39 -0.02 1.00 16 4 C 0.12 2.36 5.31 86.38 0.46 2.82 16 5 N -0.72 -14.15 4.96 -463.05 -2.30 -16.44 16 6 C 0.54 12.57 6.78 87.66 0.59 13.16 16 7 O -0.57 -17.59 16.18 -3.04 -0.05 -17.64 16 8 C -0.12 -2.16 0.94 -51.12 -0.05 -2.21 16 9 C -0.14 -2.58 5.49 31.63 0.17 -2.40 16 10 C 0.03 0.56 6.20 86.40 0.54 1.09 16 11 N -0.50 -9.05 6.07 -878.36 -5.33 -14.38 16 12 C 0.06 1.21 5.45 86.72 0.47 1.68 16 13 C 0.03 0.40 5.86 86.15 0.50 0.90 16 14 C -0.15 -1.77 5.53 31.17 0.17 -1.60 16 15 C -0.10 -1.35 5.12 31.52 0.16 -1.19 16 16 N -0.68 -17.94 5.92 -495.59 -2.94 -20.87 16 17 C 0.06 1.63 5.96 85.56 0.51 2.14 16 18 C 0.45 18.99 7.82 87.66 0.69 19.67 16 19 O -0.61 -32.72 15.78 -3.08 -0.05 -32.77 16 20 N -0.59 -26.38 5.09 -306.99 -1.56 -27.94 16 21 C -0.33 -18.68 10.16 84.04 0.85 -17.83 16 22 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 23 C -0.02 -0.82 5.50 84.93 0.47 -0.36 16 24 N -0.94 -55.43 13.96 21.66 0.30 -55.13 16 25 Si 0.96 37.29 27.74 68.60 1.90 39.19 16 26 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 27 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 28 H -0.23 -7.17 6.52 99.48 0.65 -6.52 16 29 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.05 7.45 -2.38 -0.02 1.04 16 32 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.41 6.93 7.06 -92.71 -0.65 6.28 16 35 H 0.09 1.53 6.93 -2.39 -0.02 1.52 16 36 H 0.06 1.32 8.00 -2.39 -0.02 1.30 16 37 H 0.09 1.35 6.94 -2.39 -0.02 1.34 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.71 7.94 -2.38 -0.02 1.69 16 40 H 0.09 1.64 7.74 -2.39 -0.02 1.62 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 0.98 7.87 -2.39 -0.02 0.96 16 43 H 0.07 0.91 5.37 -2.39 -0.01 0.89 16 44 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.07 0.98 8.11 -2.39 -0.02 0.96 16 46 H 0.08 0.95 7.83 -2.38 -0.02 0.93 16 47 H 0.34 9.66 6.41 -89.70 -0.58 9.08 16 48 H 0.08 1.67 8.06 -2.39 -0.02 1.65 16 49 H 0.12 2.61 7.44 -2.39 -0.02 2.59 16 50 H 0.39 14.20 5.76 -92.70 -0.53 13.67 16 51 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -78.40 394.18 -4.53 -82.93 By element: Atomic # 1 Polarization: 48.11 SS G_CDS: -0.86 Total: 47.25 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 6.35 Total: 15.81 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -11.82 Total: -134.77 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -0.10 Total: -50.41 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 1.90 Total: 39.19 kcal Total: -78.40 -4.53 -82.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714295649.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.580 kcal (2) G-P(sol) polarization free energy of solvation -78.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds