Wall clock time and date at job start Tue Mar 31 2020 22:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46766 * 124.34632 * 2 1 4 4 C 1.54475 * 105.46997 * 162.98325 * 3 2 1 5 5 C 1.54626 * 101.76657 * 25.41651 * 4 3 2 6 6 H 1.09000 * 110.48854 * 94.01157 * 5 4 3 7 7 C 1.50706 * 110.48914 * 216.52211 * 5 4 3 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 5 4 9 9 N 1.34773 * 120.00081 * 179.72674 * 7 5 4 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 5 11 11 C 1.52992 * 109.47161 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.46954 * 180.02562 * 11 10 9 13 13 C 1.46848 * 110.99995 * 294.20448 * 12 11 10 14 14 C 1.53033 * 109.52741 * 174.16599 * 13 12 11 15 15 C 1.53121 * 109.28233 * 59.17711 * 14 13 12 16 16 N 1.46494 * 109.52409 * 182.44485 * 15 14 13 17 17 C 1.36939 * 119.99980 * 274.68269 * 16 15 14 18 18 H 1.07997 * 119.99992 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99962 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99861 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00160 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47208 * 89.99749 * 21 19 17 23 23 H 1.48497 * 109.47164 * 210.00088 * 21 19 17 24 24 H 1.48500 * 109.47031 * 329.99909 * 21 19 17 25 25 C 1.53122 * 109.15834 * 302.34966 * 15 14 13 26 26 C 1.46854 * 111.00094 * 170.00049 * 12 11 10 27 27 C 1.34419 * 124.34991 * 179.97438 * 2 1 3 28 28 O 1.21280 * 124.94405 * 0.44864 * 27 2 1 29 29 H 1.09001 * 109.46786 * 90.00335 * 1 2 3 30 30 H 1.09003 * 109.46915 * 209.99588 * 1 2 3 31 31 H 1.08994 * 109.46934 * 329.99864 * 1 2 3 32 32 H 1.09000 * 110.24569 * 43.98615 * 3 2 1 33 33 H 1.09002 * 110.31697 * 282.02071 * 3 2 1 34 34 H 1.09001 * 110.97057 * 267.29871 * 4 3 2 35 35 H 1.08998 * 110.99870 * 143.55129 * 4 3 2 36 36 H 0.96998 * 120.00525 * 359.97438 * 9 7 5 37 37 H 1.09004 * 109.46587 * 299.99661 * 10 9 7 38 38 H 1.08998 * 109.47213 * 59.99069 * 10 9 7 39 39 H 1.09004 * 109.47116 * 299.99365 * 11 10 9 40 40 H 1.08993 * 109.47352 * 59.99609 * 11 10 9 41 41 H 1.09006 * 109.46088 * 294.17984 * 13 12 11 42 42 H 1.08997 * 109.45851 * 54.14531 * 13 12 11 43 43 H 1.09010 * 109.49829 * 299.23768 * 14 13 12 44 44 H 1.08991 * 109.50619 * 179.12357 * 14 13 12 45 45 H 1.08996 * 109.51895 * 62.25071 * 15 14 13 46 46 H 0.96998 * 120.00320 * 94.68571 * 16 15 14 47 47 H 0.96998 * 119.99837 * 179.97438 * 20 19 17 48 48 H 1.08998 * 109.50575 * 297.71018 * 25 15 14 49 49 H 1.08998 * 109.49929 * 177.58832 * 25 15 14 50 50 H 1.08997 * 109.45625 * 305.85132 * 26 12 11 51 51 H 1.08997 * 109.46217 * 65.81833 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7488 0.4357 5 6 3.6898 -0.7377 0.0101 6 1 4.1216 -0.8532 -0.9840 7 6 4.4404 -1.5785 1.0106 8 8 4.9463 -1.0577 1.9820 9 7 4.5451 -2.9098 0.8283 10 6 5.2743 -3.7272 1.8012 11 6 5.2425 -5.1924 1.3620 12 7 5.9731 -6.0120 2.3378 13 6 7.4022 -5.6745 2.3435 14 6 8.1041 -6.4399 3.4676 15 6 7.9166 -7.9438 3.2490 16 7 8.5366 -8.6800 4.3534 17 6 9.8719 -8.9805 4.3117 18 1 10.4679 -8.6751 3.4645 19 6 10.4592 -9.6786 5.3579 20 7 11.7426 -9.9679 5.3176 21 14 9.4279 -10.2087 6.8224 22 1 8.8630 -11.5582 6.5675 23 1 10.2793 -10.2501 8.0384 24 1 8.3216 -9.2393 7.0256 25 6 6.4196 -8.2615 3.1988 26 6 5.7666 -7.4433 2.0824 27 6 2.2236 -1.1098 0.0005 28 8 1.7948 -2.2442 -0.0068 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.8984 1.9383 0.7102 33 1 2.3309 1.6444 -0.9998 34 1 3.8269 0.8448 1.5141 35 1 4.4758 1.3010 -0.0961 36 1 4.1371 -3.3269 0.0535 37 1 6.3083 -3.3871 1.8590 38 1 4.8052 -3.6314 2.7804 39 1 4.2083 -5.5321 1.3046 40 1 5.7113 -5.2884 0.3828 41 1 7.8442 -5.9497 1.3858 42 1 7.5217 -4.6031 2.5040 43 1 7.6719 -6.1548 4.4269 44 1 9.1675 -6.2011 3.4616 45 1 8.3827 -8.2359 2.3081 46 1 8.0012 -8.9547 5.1142 47 1 12.1531 -10.4553 6.0488 48 1 5.9609 -8.0052 4.1538 49 1 6.2796 -9.3241 3.0007 50 1 4.6981 -7.6565 2.0533 51 1 6.2162 -7.7101 1.1260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717017640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:14 Heat of formation + Delta-G solvation = -46.700213 kcal Electronic energy + Delta-G solvation = -29240.528111 eV Core-core repulsion = 25175.145009 eV Total energy + Delta-G solvation = -4065.383102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41007 -39.48411 -38.80531 -37.00194 -35.84069 -34.50004 -33.41066 -32.23999 -30.62888 -30.31824 -28.97882 -27.61587 -27.21872 -24.39751 -23.10762 -22.95412 -21.87498 -21.18121 -21.04495 -19.97427 -19.46642 -17.94662 -17.49383 -17.41084 -16.79688 -16.37782 -15.81598 -15.53490 -15.36172 -14.72576 -14.66311 -14.49077 -14.28855 -14.13341 -13.98656 -13.72574 -13.35916 -13.24500 -13.12137 -13.07281 -13.01451 -12.74640 -12.46568 -12.31741 -11.95261 -11.72586 -11.65849 -11.57949 -11.40921 -10.90985 -10.82258 -10.59886 -10.47380 -10.29754 -10.21249 -10.08308 -9.73679 -9.53572 -9.33435 -9.27423 -8.85308 -8.26255 -7.21459 -5.73151 -3.08020 1.82923 2.19914 2.51576 2.82696 3.41757 3.45613 3.49162 3.65262 3.79676 4.02475 4.30315 4.34672 4.57065 4.63440 4.66508 4.70761 4.74068 4.91027 4.92093 4.96428 5.11554 5.17964 5.23779 5.26432 5.31226 5.39697 5.52754 5.53392 5.60510 5.65503 5.72972 5.83379 5.84920 5.85852 5.99672 6.10777 6.13625 6.23256 6.27315 6.43549 6.44594 6.60685 6.82114 7.04094 7.15590 7.20456 7.25035 7.53669 7.87254 8.03702 8.46361 9.25428 9.98314 10.18887 11.45318 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028642 B = 0.001762 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.350427 B =15891.109352 C =16243.248084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.621 5.621 3 C 0.100 3.900 4 C -0.117 4.117 5 C -0.150 4.150 6 H 0.136 0.864 7 C 0.531 3.469 8 O -0.531 6.531 9 N -0.716 5.716 10 C 0.121 3.879 11 C 0.046 3.954 12 N -0.534 5.534 13 C 0.054 3.946 14 C -0.132 4.132 15 C 0.182 3.818 16 N -0.749 5.749 17 C -0.241 4.241 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.936 5.936 21 Si 0.885 3.115 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.276 1.276 25 C -0.125 4.125 26 C 0.065 3.935 27 C 0.527 3.473 28 O -0.517 6.517 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.405 0.595 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.568 24.274 -16.139 37.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.355 5.355 3 C -0.023 4.023 4 C -0.156 4.156 5 C -0.174 4.174 6 H 0.153 0.847 7 C 0.315 3.685 8 O -0.408 6.408 9 N -0.367 5.367 10 C -0.003 4.003 11 C -0.083 4.083 12 N -0.259 5.259 13 C -0.074 4.074 14 C -0.173 4.173 15 C 0.072 3.928 16 N -0.390 5.390 17 C -0.371 4.371 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.584 5.584 21 Si 0.715 3.285 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.202 1.202 25 C -0.164 4.164 26 C -0.063 4.063 27 C 0.313 3.687 28 O -0.393 6.393 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.240 0.760 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.086 0.914 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -23.445 24.074 -15.023 36.809 hybrid contribution -0.497 -0.687 -0.160 0.863 sum -23.942 23.388 -15.183 36.752 Atomic orbital electron populations 1.21602 0.77359 1.03511 1.02131 1.48089 1.06802 1.07244 1.73381 1.22220 0.90448 0.87304 1.02289 1.22627 0.96355 0.91651 1.04918 1.22176 0.94907 0.97990 1.02370 0.84675 1.19661 0.80291 0.82433 0.86089 1.90738 1.47795 1.72216 1.30002 1.45866 1.55635 1.07107 1.28092 1.21394 0.97054 0.89290 0.92550 1.22169 0.99698 0.92482 0.93947 1.61840 1.10829 1.04683 1.48556 1.22242 0.86420 1.00048 0.98683 1.22275 0.99879 0.97609 0.97514 1.20213 0.90494 0.90038 0.92010 1.42785 1.08105 1.67308 1.20842 1.19081 0.83862 1.29319 1.04840 0.89317 1.24670 0.95645 1.00695 0.98258 1.69706 1.09804 1.45504 1.33340 0.86538 0.79794 0.78655 0.83507 1.21172 1.21827 1.20234 1.21904 0.96922 0.98874 0.98656 1.22026 1.00177 0.86598 0.97526 1.20294 0.87897 0.84726 0.75778 1.90766 1.78050 1.20703 1.49752 0.92284 0.90453 0.90723 0.89725 0.90551 0.87866 0.88323 0.75991 0.90921 0.90382 0.90222 0.94403 0.95049 0.91126 0.91767 0.91237 0.93159 0.80628 0.93137 0.91405 0.91365 0.91103 0.94833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.43 10.96 59.85 0.66 1.08 16 2 N -0.62 -3.83 3.33 -180.28 -0.60 -4.43 16 3 C 0.10 0.34 7.35 -3.12 -0.02 0.31 16 4 C -0.12 -0.57 6.48 -25.10 -0.16 -0.73 16 5 C -0.15 -1.03 3.33 -91.78 -0.31 -1.34 16 6 H 0.14 0.58 8.14 -51.93 -0.42 0.15 16 7 C 0.53 5.59 7.12 -10.98 -0.08 5.51 16 8 O -0.53 -7.40 15.49 5.56 0.09 -7.31 16 9 N -0.72 -7.04 5.29 -60.29 -0.32 -7.36 16 10 C 0.12 1.35 5.60 -4.04 -0.02 1.33 16 11 C 0.05 0.49 5.07 -3.83 -0.02 0.47 16 12 N -0.53 -7.10 4.66 -234.68 -1.09 -8.20 16 13 C 0.05 0.78 5.29 -3.84 -0.02 0.76 16 14 C -0.13 -2.37 5.68 -26.65 -0.15 -2.52 16 15 C 0.18 3.55 2.84 -67.81 -0.19 3.35 16 16 N -0.75 -17.99 4.93 -53.31 -0.26 -18.26 16 17 C -0.24 -6.87 10.42 -15.06 -0.16 -7.03 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 20 N -0.94 -29.72 13.97 55.49 0.78 -28.95 16 21 Si 0.88 22.55 27.74 -169.99 -4.71 17.83 16 22 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 25 C -0.12 -2.00 5.57 -26.65 -0.15 -2.15 16 26 C 0.06 0.86 5.46 -3.83 -0.02 0.84 16 27 C 0.53 4.59 7.44 -10.86 -0.08 4.51 16 28 O -0.52 -6.16 16.71 5.56 0.09 -6.07 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.45 7.93 -51.93 -0.41 0.04 16 31 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.10 0.72 7.00 -51.93 -0.36 0.36 16 35 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.41 3.34 7.97 -40.82 -0.33 3.02 16 37 H 0.07 0.88 6.43 -51.93 -0.33 0.54 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 0.80 7.99 -51.93 -0.41 0.38 16 40 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 41 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.96 6.21 -51.93 -0.32 0.63 16 43 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 45 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 46 H 0.36 8.60 5.66 -40.82 -0.23 8.36 16 47 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 49 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.07 0.82 8.01 -51.93 -0.42 0.41 16 51 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 402.57 15.07 6.07 6.07 Total: -1.00 -36.23 402.57 -9.54 -45.77 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -8.75 Total: 6.52 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -0.82 Total: 4.39 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -1.50 Total: -67.19 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.18 Total: -13.38 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.83 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.23 -9.54 -45.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717017640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.932 kcal (2) G-P(sol) polarization free energy of solvation -36.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds