Wall clock time and date at job start Tue Mar 31 2020 22:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46766 * 124.34632 * 2 1 4 4 C 1.54475 * 105.46997 * 162.98325 * 3 2 1 5 5 C 1.54626 * 101.76657 * 25.41651 * 4 3 2 6 6 H 1.09000 * 110.48854 * 94.01157 * 5 4 3 7 7 C 1.50706 * 110.48914 * 216.52211 * 5 4 3 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 5 4 9 9 N 1.34773 * 120.00081 * 179.72674 * 7 5 4 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 5 11 11 C 1.52992 * 109.47161 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.46954 * 180.02562 * 11 10 9 13 13 C 1.46848 * 110.99995 * 294.20448 * 12 11 10 14 14 C 1.53033 * 109.52741 * 174.16599 * 13 12 11 15 15 C 1.53121 * 109.28233 * 59.17711 * 14 13 12 16 16 N 1.46494 * 109.52409 * 182.44485 * 15 14 13 17 17 C 1.36939 * 119.99980 * 274.68269 * 16 15 14 18 18 H 1.07997 * 119.99992 * 359.97438 * 17 16 15 19 19 C 1.38812 * 119.99962 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99861 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00160 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47208 * 89.99749 * 21 19 17 23 23 H 1.48497 * 109.47164 * 210.00088 * 21 19 17 24 24 H 1.48500 * 109.47031 * 329.99909 * 21 19 17 25 25 C 1.53122 * 109.15834 * 302.34966 * 15 14 13 26 26 C 1.46854 * 111.00094 * 170.00049 * 12 11 10 27 27 C 1.34419 * 124.34991 * 179.97438 * 2 1 3 28 28 O 1.21280 * 124.94405 * 0.44864 * 27 2 1 29 29 H 1.09001 * 109.46786 * 90.00335 * 1 2 3 30 30 H 1.09003 * 109.46915 * 209.99588 * 1 2 3 31 31 H 1.08994 * 109.46934 * 329.99864 * 1 2 3 32 32 H 1.09000 * 110.24569 * 43.98615 * 3 2 1 33 33 H 1.09002 * 110.31697 * 282.02071 * 3 2 1 34 34 H 1.09001 * 110.97057 * 267.29871 * 4 3 2 35 35 H 1.08998 * 110.99870 * 143.55129 * 4 3 2 36 36 H 0.96998 * 120.00525 * 359.97438 * 9 7 5 37 37 H 1.09004 * 109.46587 * 299.99661 * 10 9 7 38 38 H 1.08998 * 109.47213 * 59.99069 * 10 9 7 39 39 H 1.09004 * 109.47116 * 299.99365 * 11 10 9 40 40 H 1.08993 * 109.47352 * 59.99609 * 11 10 9 41 41 H 1.09006 * 109.46088 * 294.17984 * 13 12 11 42 42 H 1.08997 * 109.45851 * 54.14531 * 13 12 11 43 43 H 1.09010 * 109.49829 * 299.23768 * 14 13 12 44 44 H 1.08991 * 109.50619 * 179.12357 * 14 13 12 45 45 H 1.08996 * 109.51895 * 62.25071 * 15 14 13 46 46 H 0.96998 * 120.00320 * 94.68571 * 16 15 14 47 47 H 0.96998 * 119.99837 * 179.97438 * 20 19 17 48 48 H 1.08998 * 109.50575 * 297.71018 * 25 15 14 49 49 H 1.08998 * 109.49929 * 177.58832 * 25 15 14 50 50 H 1.08997 * 109.45625 * 305.85132 * 26 12 11 51 51 H 1.08997 * 109.46217 * 65.81833 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2118 0.0000 4 6 3.7010 0.7488 0.4357 5 6 3.6898 -0.7377 0.0101 6 1 4.1216 -0.8532 -0.9840 7 6 4.4404 -1.5785 1.0106 8 8 4.9463 -1.0577 1.9820 9 7 4.5451 -2.9098 0.8283 10 6 5.2743 -3.7272 1.8012 11 6 5.2425 -5.1924 1.3620 12 7 5.9731 -6.0120 2.3378 13 6 7.4022 -5.6745 2.3435 14 6 8.1041 -6.4399 3.4676 15 6 7.9166 -7.9438 3.2490 16 7 8.5366 -8.6800 4.3534 17 6 9.8719 -8.9805 4.3117 18 1 10.4679 -8.6751 3.4645 19 6 10.4592 -9.6786 5.3579 20 7 11.7426 -9.9679 5.3176 21 14 9.4279 -10.2087 6.8224 22 1 8.8630 -11.5582 6.5675 23 1 10.2793 -10.2501 8.0384 24 1 8.3216 -9.2393 7.0256 25 6 6.4196 -8.2615 3.1988 26 6 5.7666 -7.4433 2.0824 27 6 2.2236 -1.1098 0.0005 28 8 1.7948 -2.2442 -0.0068 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.8984 1.9383 0.7102 33 1 2.3309 1.6444 -0.9998 34 1 3.8269 0.8448 1.5141 35 1 4.4758 1.3010 -0.0961 36 1 4.1371 -3.3269 0.0535 37 1 6.3083 -3.3871 1.8590 38 1 4.8052 -3.6314 2.7804 39 1 4.2083 -5.5321 1.3046 40 1 5.7113 -5.2884 0.3828 41 1 7.8442 -5.9497 1.3858 42 1 7.5217 -4.6031 2.5040 43 1 7.6719 -6.1548 4.4269 44 1 9.1675 -6.2011 3.4616 45 1 8.3827 -8.2359 2.3081 46 1 8.0012 -8.9547 5.1142 47 1 12.1531 -10.4553 6.0488 48 1 5.9609 -8.0052 4.1538 49 1 6.2796 -9.3241 3.0007 50 1 4.6981 -7.6565 2.0533 51 1 6.2162 -7.7101 1.1260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717017640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:13 Heat of formation + Delta-G solvation = -75.265050 kcal Electronic energy + Delta-G solvation = -29241.766776 eV Core-core repulsion = 25175.145009 eV Total energy + Delta-G solvation = -4066.621767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.01538 -40.40260 -39.89086 -37.62303 -37.15996 -35.79312 -34.14648 -33.81099 -32.10002 -31.75909 -29.85385 -28.41567 -27.70409 -25.94202 -24.47001 -23.80231 -23.02904 -22.31583 -21.80653 -20.98813 -20.58279 -19.51625 -18.58442 -17.93170 -17.58411 -17.18222 -16.81391 -16.61621 -16.35967 -16.16798 -15.66816 -15.58358 -15.37138 -14.94779 -14.90035 -14.77059 -14.66813 -14.51732 -14.23309 -14.13850 -13.74340 -13.46276 -13.40137 -13.13973 -13.09040 -12.96247 -12.83570 -12.69495 -12.45157 -12.29280 -12.10225 -12.03285 -11.87764 -11.84272 -11.63044 -11.24608 -11.18790 -10.94255 -10.90811 -10.15695 -9.76616 -9.33668 -9.27560 -8.02432 -5.35216 1.16689 1.37854 1.40670 1.48179 1.52231 1.95373 2.14950 2.48481 2.99345 3.17964 3.28450 3.35061 3.55177 3.74129 3.82135 3.95581 3.96987 4.03733 4.15562 4.16551 4.27756 4.34743 4.35671 4.40952 4.47075 4.53059 4.63865 4.66932 4.71512 4.72544 4.79654 4.86507 4.88775 4.93184 4.97737 4.99263 5.09208 5.14166 5.18391 5.34782 5.38186 5.46852 5.53610 5.76505 5.96181 6.08800 6.11900 6.22288 6.41097 6.96733 7.08114 7.09878 7.85162 8.04652 9.19213 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.028642 B = 0.001762 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.350427 B =15891.109352 C =16243.248084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.620 5.620 3 C 0.101 3.899 4 C -0.115 4.115 5 C -0.143 4.143 6 H 0.166 0.834 7 C 0.525 3.475 8 O -0.572 6.572 9 N -0.709 5.709 10 C 0.127 3.873 11 C 0.054 3.946 12 N -0.544 5.544 13 C 0.065 3.935 14 C -0.125 4.125 15 C 0.174 3.826 16 N -0.752 5.752 17 C -0.228 4.228 18 H 0.055 0.945 19 C -0.066 4.066 20 N -0.985 5.985 21 Si 0.956 3.044 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.255 1.255 25 C -0.116 4.116 26 C 0.070 3.930 27 C 0.516 3.484 28 O -0.560 6.560 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.415 0.585 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.038 0.962 46 H 0.365 0.635 47 H 0.257 0.743 48 H 0.065 0.935 49 H 0.073 0.927 50 H 0.097 0.903 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.524 25.922 -17.459 40.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.353 5.353 3 C -0.020 4.020 4 C -0.153 4.153 5 C -0.167 4.167 6 H 0.183 0.817 7 C 0.310 3.690 8 O -0.451 6.451 9 N -0.361 5.361 10 C 0.003 3.997 11 C -0.074 4.074 12 N -0.269 5.269 13 C -0.063 4.063 14 C -0.165 4.165 15 C 0.066 3.934 16 N -0.395 5.395 17 C -0.359 4.359 18 H 0.073 0.927 19 C -0.257 4.257 20 N -0.636 5.636 21 Si 0.784 3.216 22 H -0.203 1.203 23 H -0.224 1.224 24 H -0.180 1.180 25 C -0.155 4.155 26 C -0.058 4.058 27 C 0.302 3.698 28 O -0.439 6.439 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.142 0.858 36 H 0.251 0.749 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.198 0.802 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.115 0.885 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -26.474 25.781 -16.396 40.428 hybrid contribution 0.417 -1.104 0.163 1.192 sum -26.058 24.677 -16.233 39.388 Atomic orbital electron populations 1.21746 0.76527 1.03791 1.03010 1.48308 1.07621 1.07541 1.71797 1.22450 0.88856 0.86345 1.04381 1.22668 0.98320 0.90536 1.03742 1.22235 0.93464 0.98324 1.02703 0.81698 1.20323 0.79799 0.82650 0.86185 1.90719 1.49604 1.72948 1.31827 1.45835 1.55147 1.07086 1.27992 1.21202 0.96377 0.90059 0.92077 1.22133 1.00118 0.91327 0.93790 1.61773 1.09898 1.05196 1.50073 1.22052 0.87167 0.99898 0.97202 1.22085 0.98764 0.96975 0.98681 1.20470 0.92735 0.90304 0.89888 1.42818 1.06501 1.67882 1.22266 1.19030 0.85575 1.27876 1.03394 0.92722 1.25498 0.96902 1.01621 1.01694 1.69887 1.11956 1.47201 1.34511 0.85387 0.78412 0.78793 0.79043 1.20282 1.22367 1.17971 1.21805 0.93912 0.99869 0.99908 1.22008 1.01440 0.85940 0.96427 1.20612 0.88803 0.84742 0.75612 1.90732 1.78827 1.22323 1.52016 0.91105 0.92421 0.88212 0.88100 0.87682 0.90337 0.85798 0.74865 0.91918 0.92536 0.88861 0.92787 0.94526 0.90238 0.92673 0.93824 0.94433 0.80231 0.93421 0.91579 0.90853 0.88503 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.96 127.77 1.40 2.04 16 2 N -0.62 -6.36 3.33 -842.88 -2.81 -9.17 16 3 C 0.10 0.36 7.35 86.83 0.64 1.00 16 4 C -0.11 -0.86 6.48 31.65 0.21 -0.66 16 5 C -0.14 -1.72 3.33 -11.55 -0.04 -1.76 16 6 H 0.17 0.92 8.14 -2.39 -0.02 0.91 16 7 C 0.52 10.71 7.12 87.66 0.62 11.34 16 8 O -0.57 -16.07 15.49 -3.04 -0.05 -16.12 16 9 N -0.71 -13.26 5.29 -463.05 -2.45 -15.71 16 10 C 0.13 2.74 5.60 86.38 0.48 3.23 16 11 C 0.05 1.03 5.07 86.30 0.44 1.47 16 12 N -0.54 -13.37 4.66 -896.38 -4.17 -17.54 16 13 C 0.07 1.81 5.29 86.32 0.46 2.27 16 14 C -0.12 -4.51 5.68 30.65 0.17 -4.33 16 15 C 0.17 6.75 2.84 45.07 0.13 6.88 16 16 N -0.75 -36.18 4.93 -322.57 -1.59 -37.77 16 17 C -0.23 -13.31 10.42 84.03 0.88 -12.43 16 18 H 0.05 3.50 8.06 -2.91 -0.02 3.48 16 19 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 20 N -0.98 -64.44 13.97 21.65 0.30 -64.14 16 21 Si 0.96 46.90 27.74 68.60 1.90 48.80 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 24 H -0.25 -11.46 6.52 99.48 0.65 -10.82 16 25 C -0.12 -3.52 5.57 30.65 0.17 -3.35 16 26 C 0.07 1.65 5.46 86.32 0.47 2.13 16 27 C 0.52 8.34 7.44 87.90 0.65 8.99 16 28 O -0.56 -13.10 16.71 -3.03 -0.05 -13.15 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.65 7.93 -2.39 -0.02 0.63 16 31 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.08 1.03 7.00 -2.39 -0.02 1.02 16 35 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.41 6.22 7.97 -92.71 -0.74 5.48 16 37 H 0.06 1.48 6.43 -2.39 -0.02 1.47 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.58 7.99 -2.39 -0.02 1.57 16 40 H 0.05 0.90 8.12 -2.39 -0.02 0.88 16 41 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.08 2.09 6.21 -2.39 -0.01 2.08 16 43 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 46 H 0.36 16.93 5.66 -92.71 -0.52 16.40 16 47 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 48 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.10 1.87 8.01 -2.39 -0.02 1.85 16 51 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -82.11 402.57 -2.16 -84.27 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.39 Total: 27.24 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 7.15 Total: 13.29 kcal Atomic # 7 Polarization: -133.62 SS G_CDS: -10.72 Total: -144.33 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.10 Total: -29.27 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.90 Total: 48.80 kcal Total: -82.11 -2.16 -84.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717017640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.001 kcal (2) G-P(sol) polarization free energy of solvation -82.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds