Wall clock time and date at job start Tue Mar 31 2020 22:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46006 * 118.53538 * 2 1 4 4 C 1.52990 * 110.04079 * 161.86152 * 3 2 1 5 5 N 1.47182 * 108.72961 * 50.29164 * 4 3 2 6 6 C 1.46895 * 111.00195 * 54.36577 * 5 4 3 7 7 C 1.50709 * 109.46924 * 170.70547 * 6 5 4 8 8 O 1.21278 * 120.00228 * 353.79022 * 7 6 5 9 9 N 1.34774 * 119.99553 * 173.78865 * 7 6 5 10 10 C 1.46504 * 119.99994 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.66764 * 31.76203 * 10 9 7 12 12 C 1.54891 * 110.75669 * 268.33286 * 10 9 7 13 13 C 1.54260 * 104.19435 * 203.73914 * 12 10 9 14 14 C 1.53877 * 106.60063 * 23.60893 * 13 12 10 15 15 H 1.08999 * 110.07015 * 240.69028 * 14 13 12 16 16 C 1.53004 * 110.03101 * 119.28208 * 14 13 12 17 17 N 1.46503 * 109.46827 * 67.83789 * 16 14 13 18 18 C 1.36934 * 119.99402 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00485 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00016 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00322 * 179.97438 * 20 18 17 22 22 Si 1.86811 * 119.99635 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46914 * 89.99430 * 22 20 18 24 24 H 1.48499 * 109.46747 * 209.99637 * 22 20 18 25 25 H 1.48498 * 109.46926 * 329.99554 * 22 20 18 26 26 C 1.54262 * 106.59685 * 0.02562 * 14 13 12 27 27 C 1.46909 * 110.17459 * 291.00115 * 5 4 3 28 28 C 1.33714 * 118.53469 * 180.02562 * 2 1 3 29 29 O 1.21278 * 118.62583 * 1.94660 * 28 2 1 30 30 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46752 * 299.97713 * 1 2 3 32 32 H 1.08995 * 109.46849 * 59.97801 * 1 2 3 33 33 H 1.09001 * 109.38049 * 41.68437 * 3 2 1 34 34 H 1.09004 * 109.28302 * 281.97460 * 3 2 1 35 35 H 1.09001 * 109.58742 * 290.51687 * 4 3 2 36 36 H 1.09000 * 109.59305 * 170.06387 * 4 3 2 37 37 H 1.08993 * 109.47435 * 290.71089 * 6 5 4 38 38 H 1.09001 * 109.47085 * 50.71271 * 6 5 4 39 39 H 0.97001 * 120.00373 * 0.02562 * 9 7 6 40 40 H 1.09000 * 110.48499 * 322.41950 * 12 10 9 41 41 H 1.09001 * 110.48965 * 85.06048 * 12 10 9 42 42 H 1.09002 * 110.03732 * 264.32262 * 13 12 10 43 43 H 1.09011 * 110.07523 * 142.91634 * 13 12 10 44 44 H 1.08997 * 109.46590 * 187.83172 * 16 14 13 45 45 H 1.08998 * 109.47346 * 307.83330 * 16 14 13 46 46 H 0.96995 * 120.00653 * 359.97438 * 17 16 14 47 47 H 0.97006 * 120.00353 * 180.02562 * 21 20 18 48 48 H 1.08998 * 110.48517 * 217.71519 * 26 14 13 49 49 H 1.08998 * 110.49173 * 95.06777 * 26 14 13 50 50 H 1.09005 * 109.38314 * 290.14666 * 27 5 4 51 51 H 1.08993 * 109.30476 * 170.40506 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6129 1.0908 0.4474 5 7 4.2093 -0.0014 -0.3384 6 6 4.0669 0.2478 -1.7790 7 6 4.8803 -0.7626 -2.5464 8 8 5.6038 -1.5347 -1.9539 9 7 4.8035 -0.8079 -3.8912 10 6 5.5937 -1.7904 -4.6372 11 1 5.7241 -2.7021 -4.0541 12 6 6.9639 -1.1957 -5.0471 13 6 7.3891 -2.0334 -6.2707 14 6 6.0984 -2.6098 -6.8788 15 1 6.1310 -3.6992 -6.8620 16 6 5.9288 -2.1130 -8.3160 17 7 6.9726 -2.6982 -9.1612 18 6 7.0219 -2.3961 -10.4959 19 1 6.2917 -1.7263 -10.9254 20 6 8.0112 -2.9501 -11.2968 21 7 8.0583 -2.6602 -12.5798 22 14 9.2748 -4.1081 -10.5538 23 1 8.7747 -5.5041 -10.6347 24 1 10.5512 -3.9952 -11.3043 25 1 9.5027 -3.7455 -9.1320 26 6 4.9339 -2.1017 -6.0038 27 6 3.6018 -1.2855 0.0363 28 6 2.1038 -1.1747 -0.0005 29 8 1.4466 -2.1934 -0.0371 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3633 0.5142 -0.8898 33 1 1.6607 1.9673 0.6838 34 1 2.1469 1.7009 -1.0065 35 1 3.6377 0.8350 1.5067 36 1 4.1724 2.0108 0.2780 37 1 3.0178 0.1595 -2.0611 38 1 4.4222 1.2518 -2.0109 39 1 4.2251 -0.1901 -4.3652 40 1 6.8575 -0.1462 -5.3215 41 1 7.6860 -1.3082 -4.2383 42 1 8.0485 -2.8430 -5.9582 43 1 7.8951 -1.4005 -6.9999 44 1 4.9492 -2.4106 -8.6900 45 1 6.0110 -1.0263 -8.3369 46 1 7.6287 -3.2994 -8.7755 47 1 8.7494 -3.0476 -13.1395 48 1 4.1745 -2.8756 -5.8927 49 1 4.4999 -1.1987 -6.4331 50 1 3.9200 -1.5562 1.0431 51 1 3.9250 -2.0551 -0.6645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717875817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:34 Heat of formation + Delta-G solvation = -41.380655 kcal Electronic energy + Delta-G solvation = -29702.019335 eV Core-core repulsion = 25636.866906 eV Total energy + Delta-G solvation = -4065.152429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47703 -39.98147 -38.38626 -37.52962 -35.51238 -34.94576 -33.52577 -31.36710 -30.61760 -29.92343 -29.01250 -28.11438 -27.05253 -25.24912 -24.43363 -23.11321 -21.91749 -21.13968 -20.72758 -19.39627 -19.06572 -17.88633 -17.53506 -17.32075 -16.96014 -16.53352 -16.27128 -15.98704 -15.60216 -15.23763 -14.98239 -14.51260 -14.30959 -13.93361 -13.77591 -13.61115 -13.53108 -13.40106 -13.14187 -13.01964 -12.75166 -12.59226 -12.34725 -12.20907 -12.05803 -12.00677 -11.90313 -11.58061 -11.37770 -10.95567 -10.88058 -10.86396 -10.50403 -10.42042 -10.26619 -10.01874 -9.97310 -9.57650 -9.34942 -9.16809 -8.87924 -8.85963 -7.21263 -5.75889 -3.10948 2.08777 2.31517 2.38518 2.72974 3.37441 3.38949 3.42205 3.46716 3.85081 4.18254 4.24930 4.31450 4.54215 4.60076 4.60680 4.65995 4.75480 4.79624 4.80557 4.86604 4.92255 4.96561 4.99006 5.15461 5.31025 5.36445 5.37646 5.48263 5.51250 5.52057 5.59326 5.71980 5.72914 5.83206 5.92096 6.02827 6.07881 6.11323 6.19793 6.20908 6.32882 6.46004 6.53449 6.71873 6.80875 6.82678 7.28856 7.59988 8.00701 8.01345 8.43392 9.23076 9.95624 10.15880 11.42576 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.001893 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.173554 B =14789.848582 C =15037.125211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.614 5.614 3 C 0.073 3.927 4 C 0.037 3.963 5 N -0.505 5.505 6 C 0.026 3.974 7 C 0.512 3.488 8 O -0.520 6.520 9 N -0.722 5.722 10 C 0.139 3.861 11 H 0.096 0.904 12 C -0.130 4.130 13 C -0.119 4.119 14 C -0.100 4.100 15 H 0.074 0.926 16 C 0.165 3.835 17 N -0.756 5.756 18 C -0.243 4.243 19 H 0.089 0.911 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.276 1.276 26 C -0.120 4.120 27 C 0.040 3.960 28 C 0.482 3.518 29 O -0.544 6.544 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.399 0.601 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.025 0.975 45 H 0.027 0.973 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.117 0.883 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.542 12.000 30.255 35.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.349 5.349 3 C -0.051 4.051 4 C -0.091 4.091 5 N -0.228 5.228 6 C -0.105 4.105 7 C 0.297 3.703 8 O -0.395 6.395 9 N -0.373 5.373 10 C 0.035 3.965 11 H 0.114 0.886 12 C -0.169 4.169 13 C -0.157 4.157 14 C -0.119 4.119 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.401 5.401 18 C -0.373 4.373 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.202 1.202 26 C -0.159 4.159 27 C -0.091 4.091 28 C 0.269 3.731 29 O -0.420 6.420 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.131 0.869 39 H 0.233 0.767 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.043 0.957 45 H 0.045 0.955 46 H 0.194 0.806 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.135 0.865 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.882 10.961 30.556 34.925 hybrid contribution -0.263 -0.259 -0.126 0.390 sum -13.145 10.702 30.430 34.833 Atomic orbital electron populations 1.21762 0.79362 1.04707 1.01350 1.47433 1.07595 1.06041 1.73810 1.22205 0.94764 0.85470 1.02681 1.22688 0.91094 0.96104 0.99212 1.62191 1.55489 1.01900 1.03243 1.22148 0.99300 1.00352 0.88710 1.20361 0.82717 0.84796 0.82434 1.90719 1.39147 1.41127 1.68541 1.46019 1.47067 1.37932 1.06295 1.22085 0.90686 0.91783 0.91993 0.88565 1.22709 0.96311 0.99837 0.98008 1.22175 0.97430 0.99518 0.96604 1.21924 0.93741 1.00541 0.95710 0.90768 1.20714 0.92173 0.95931 0.87381 1.42722 1.33730 1.56746 1.06943 1.19060 1.11669 1.23731 0.82865 0.89306 1.24680 0.98919 1.00270 0.95409 1.69701 1.36238 1.48175 1.04203 0.86547 0.81922 0.81619 0.78477 1.21092 1.21755 1.20222 1.22601 0.98044 1.01720 0.93506 1.22612 0.86253 0.94002 1.06207 1.21506 0.92626 0.83098 0.75859 1.90726 1.67417 1.34425 1.49471 0.89096 0.92097 0.92136 0.89700 0.91149 0.88934 0.87734 0.91660 0.86915 0.76674 0.91423 0.91571 0.92067 0.90312 0.95697 0.95547 0.80614 0.93092 0.91134 0.90744 0.86534 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.41 10.55 59.85 0.63 1.04 16 2 N -0.61 -4.08 3.04 -182.47 -0.55 -4.63 16 3 C 0.07 0.24 5.71 -4.31 -0.02 0.21 16 4 C 0.04 0.13 6.03 -3.68 -0.02 0.11 16 5 N -0.51 -3.52 4.73 -237.55 -1.12 -4.64 16 6 C 0.03 0.17 4.53 -4.97 -0.02 0.14 16 7 C 0.51 5.09 7.27 -10.98 -0.08 5.01 16 8 O -0.52 -7.22 14.44 5.56 0.08 -7.14 16 9 N -0.72 -6.38 5.18 -51.86 -0.27 -6.64 16 10 C 0.14 1.54 3.27 -65.92 -0.22 1.33 16 11 H 0.10 1.23 7.55 -51.93 -0.39 0.84 16 12 C -0.13 -1.56 6.51 -25.07 -0.16 -1.73 16 13 C -0.12 -1.71 6.18 -25.62 -0.16 -1.86 16 14 C -0.10 -1.46 2.96 -89.50 -0.27 -1.73 16 15 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 16 C 0.17 3.10 5.27 -4.04 -0.02 3.08 16 17 N -0.76 -17.91 5.19 -59.91 -0.31 -18.22 16 18 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 20 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 21 N -0.94 -29.55 13.97 55.49 0.78 -28.78 16 22 Si 0.88 22.30 27.74 -169.99 -4.71 17.59 16 23 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.28 -6.53 6.52 56.52 0.37 -6.17 16 26 C -0.12 -1.36 5.98 -25.06 -0.15 -1.51 16 27 C 0.04 0.35 5.51 -5.19 -0.03 0.32 16 28 C 0.48 4.70 6.83 -11.67 -0.08 4.62 16 29 O -0.54 -7.56 16.07 5.56 0.09 -7.47 16 30 H 0.09 0.74 6.68 -51.93 -0.35 0.39 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.13 8.12 -51.93 -0.42 -0.29 16 34 H 0.07 0.17 7.07 -51.93 -0.37 -0.20 16 35 H 0.09 0.31 8.08 -51.93 -0.42 -0.11 16 36 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.07 0.38 6.20 -51.93 -0.32 0.06 16 38 H 0.11 0.44 8.09 -51.93 -0.42 0.02 16 39 H 0.40 2.47 8.57 -40.82 -0.35 2.12 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 1.28 7.61 -51.92 -0.40 0.89 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.36 8.39 5.41 -40.82 -0.22 8.17 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.07 0.77 7.73 -51.93 -0.40 0.37 16 50 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.12 1.40 6.02 -51.93 -0.31 1.09 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -37.08 396.72 -9.51 -46.60 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.61 Total: 5.43 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.85 Total: 1.93 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -1.48 Total: -62.91 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.17 Total: -14.62 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.08 -9.51 -46.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717875817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.215 kcal (2) G-P(sol) polarization free energy of solvation -37.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds