Wall clock time and date at job start Tue Mar 31 2020 22:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46006 * 118.53538 * 2 1 4 4 C 1.52990 * 110.04079 * 161.86152 * 3 2 1 5 5 N 1.47182 * 108.72961 * 50.29164 * 4 3 2 6 6 C 1.46895 * 111.00195 * 54.36577 * 5 4 3 7 7 C 1.50709 * 109.46924 * 170.70547 * 6 5 4 8 8 O 1.21278 * 120.00228 * 353.79022 * 7 6 5 9 9 N 1.34774 * 119.99553 * 173.78865 * 7 6 5 10 10 C 1.46504 * 119.99994 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.66764 * 31.76203 * 10 9 7 12 12 C 1.54891 * 110.75669 * 268.33286 * 10 9 7 13 13 C 1.54260 * 104.19435 * 203.73914 * 12 10 9 14 14 C 1.53877 * 106.60063 * 23.60893 * 13 12 10 15 15 H 1.08999 * 110.07015 * 240.69028 * 14 13 12 16 16 C 1.53004 * 110.03101 * 119.28208 * 14 13 12 17 17 N 1.46503 * 109.46827 * 67.83789 * 16 14 13 18 18 C 1.36934 * 119.99402 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00485 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00016 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00322 * 179.97438 * 20 18 17 22 22 Si 1.86811 * 119.99635 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46914 * 89.99430 * 22 20 18 24 24 H 1.48499 * 109.46747 * 209.99637 * 22 20 18 25 25 H 1.48498 * 109.46926 * 329.99554 * 22 20 18 26 26 C 1.54262 * 106.59685 * 0.02562 * 14 13 12 27 27 C 1.46909 * 110.17459 * 291.00115 * 5 4 3 28 28 C 1.33714 * 118.53469 * 180.02562 * 2 1 3 29 29 O 1.21278 * 118.62583 * 1.94660 * 28 2 1 30 30 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46752 * 299.97713 * 1 2 3 32 32 H 1.08995 * 109.46849 * 59.97801 * 1 2 3 33 33 H 1.09001 * 109.38049 * 41.68437 * 3 2 1 34 34 H 1.09004 * 109.28302 * 281.97460 * 3 2 1 35 35 H 1.09001 * 109.58742 * 290.51687 * 4 3 2 36 36 H 1.09000 * 109.59305 * 170.06387 * 4 3 2 37 37 H 1.08993 * 109.47435 * 290.71089 * 6 5 4 38 38 H 1.09001 * 109.47085 * 50.71271 * 6 5 4 39 39 H 0.97001 * 120.00373 * 0.02562 * 9 7 6 40 40 H 1.09000 * 110.48499 * 322.41950 * 12 10 9 41 41 H 1.09001 * 110.48965 * 85.06048 * 12 10 9 42 42 H 1.09002 * 110.03732 * 264.32262 * 13 12 10 43 43 H 1.09011 * 110.07523 * 142.91634 * 13 12 10 44 44 H 1.08997 * 109.46590 * 187.83172 * 16 14 13 45 45 H 1.08998 * 109.47346 * 307.83330 * 16 14 13 46 46 H 0.96995 * 120.00653 * 359.97438 * 17 16 14 47 47 H 0.97006 * 120.00353 * 180.02562 * 21 20 18 48 48 H 1.08998 * 110.48517 * 217.71519 * 26 14 13 49 49 H 1.08998 * 110.49173 * 95.06777 * 26 14 13 50 50 H 1.09005 * 109.38314 * 290.14666 * 27 5 4 51 51 H 1.08993 * 109.30476 * 170.40506 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6129 1.0908 0.4474 5 7 4.2093 -0.0014 -0.3384 6 6 4.0669 0.2478 -1.7790 7 6 4.8803 -0.7626 -2.5464 8 8 5.6038 -1.5347 -1.9539 9 7 4.8035 -0.8079 -3.8912 10 6 5.5937 -1.7904 -4.6372 11 1 5.7241 -2.7021 -4.0541 12 6 6.9639 -1.1957 -5.0471 13 6 7.3891 -2.0334 -6.2707 14 6 6.0984 -2.6098 -6.8788 15 1 6.1310 -3.6992 -6.8620 16 6 5.9288 -2.1130 -8.3160 17 7 6.9726 -2.6982 -9.1612 18 6 7.0219 -2.3961 -10.4959 19 1 6.2917 -1.7263 -10.9254 20 6 8.0112 -2.9501 -11.2968 21 7 8.0583 -2.6602 -12.5798 22 14 9.2748 -4.1081 -10.5538 23 1 8.7747 -5.5041 -10.6347 24 1 10.5512 -3.9952 -11.3043 25 1 9.5027 -3.7455 -9.1320 26 6 4.9339 -2.1017 -6.0038 27 6 3.6018 -1.2855 0.0363 28 6 2.1038 -1.1747 -0.0005 29 8 1.4466 -2.1934 -0.0371 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3633 0.5142 -0.8898 33 1 1.6607 1.9673 0.6838 34 1 2.1469 1.7009 -1.0065 35 1 3.6377 0.8350 1.5067 36 1 4.1724 2.0108 0.2780 37 1 3.0178 0.1595 -2.0611 38 1 4.4222 1.2518 -2.0109 39 1 4.2251 -0.1901 -4.3652 40 1 6.8575 -0.1462 -5.3215 41 1 7.6860 -1.3082 -4.2383 42 1 8.0485 -2.8430 -5.9582 43 1 7.8951 -1.4005 -6.9999 44 1 4.9492 -2.4106 -8.6900 45 1 6.0110 -1.0263 -8.3369 46 1 7.6287 -3.2994 -8.7755 47 1 8.7494 -3.0476 -13.1395 48 1 4.1745 -2.8756 -5.8927 49 1 4.4999 -1.1987 -6.4331 50 1 3.9200 -1.5562 1.0431 51 1 3.9250 -2.0551 -0.6645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717875817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:33 Heat of formation + Delta-G solvation = -71.043278 kcal Electronic energy + Delta-G solvation = -29703.305603 eV Core-core repulsion = 25636.866906 eV Total energy + Delta-G solvation = -4066.438697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.07004 -40.81468 -39.38806 -38.25536 -36.59026 -35.97974 -34.80865 -33.27952 -31.07168 -30.74032 -30.21319 -29.00890 -27.76016 -26.12479 -25.60835 -23.73146 -23.64060 -21.93584 -21.65412 -20.67908 -19.69331 -19.48192 -18.45700 -17.95037 -17.55489 -17.26358 -17.06067 -16.86361 -16.55048 -16.33456 -15.90333 -15.69084 -15.57389 -15.03063 -14.79335 -14.53597 -14.40355 -14.25053 -14.08232 -14.03759 -13.76970 -13.56387 -13.40921 -13.05644 -13.00857 -12.89459 -12.78702 -12.69224 -12.37891 -12.18202 -12.14027 -12.01830 -11.85548 -11.74592 -11.61413 -11.59774 -11.28998 -10.95928 -10.83342 -10.00639 -9.85862 -9.37697 -9.28288 -8.03100 -5.35720 1.37596 1.38432 1.40213 1.47688 1.65148 1.82214 2.07973 2.47885 2.83784 3.28403 3.37753 3.53236 3.55183 3.74138 3.79132 3.85900 3.98322 4.03948 4.16636 4.21765 4.33968 4.35719 4.38325 4.46017 4.50511 4.53432 4.58700 4.60951 4.64306 4.67180 4.72387 4.75197 4.89957 4.91408 4.96881 4.99660 5.14882 5.16826 5.24158 5.27507 5.37879 5.49375 5.58241 5.62308 5.76059 5.80115 6.21372 6.25310 6.61489 6.95222 7.08352 7.31114 7.85792 8.04236 9.18403 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.001893 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.173554 B =14789.848582 C =15037.125211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.607 5.607 3 C 0.069 3.931 4 C 0.037 3.963 5 N -0.517 5.517 6 C 0.033 3.967 7 C 0.506 3.494 8 O -0.565 6.565 9 N -0.711 5.711 10 C 0.147 3.853 11 H 0.078 0.922 12 C -0.120 4.120 13 C -0.119 4.119 14 C -0.093 4.093 15 H 0.071 0.929 16 C 0.162 3.838 17 N -0.759 5.759 18 C -0.233 4.233 19 H 0.058 0.942 20 C -0.066 4.066 21 N -0.984 5.984 22 Si 0.953 3.047 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.251 1.251 26 C -0.109 4.109 27 C 0.048 3.952 28 C 0.479 3.521 29 O -0.599 6.599 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.075 0.925 38 H 0.148 0.852 39 H 0.415 0.585 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.024 0.976 45 H 0.028 0.972 46 H 0.365 0.635 47 H 0.257 0.743 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.119 0.881 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.077 14.090 32.556 38.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.340 5.340 3 C -0.054 4.054 4 C -0.090 4.090 5 N -0.240 5.240 6 C -0.097 4.097 7 C 0.293 3.707 8 O -0.443 6.443 9 N -0.364 5.364 10 C 0.042 3.958 11 H 0.096 0.904 12 C -0.159 4.159 13 C -0.157 4.157 14 C -0.113 4.113 15 H 0.089 0.911 16 C 0.037 3.963 17 N -0.404 5.404 18 C -0.364 4.364 19 H 0.076 0.924 20 C -0.257 4.257 21 N -0.634 5.634 22 Si 0.780 3.220 23 H -0.206 1.206 24 H -0.222 1.222 25 H -0.176 1.176 26 C -0.147 4.147 27 C -0.083 4.083 28 C 0.266 3.734 29 O -0.480 6.480 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.151 0.849 37 H 0.093 0.907 38 H 0.165 0.835 39 H 0.252 0.748 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.042 0.958 45 H 0.046 0.954 46 H 0.198 0.802 47 H 0.066 0.934 48 H 0.097 0.903 49 H 0.108 0.892 50 H 0.137 0.863 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.463 13.139 32.900 37.899 hybrid contribution -0.185 -0.787 -0.840 1.166 sum -13.648 12.352 32.060 36.969 Atomic orbital electron populations 1.21849 0.78862 1.03384 1.03323 1.47573 1.08158 1.06410 1.71858 1.22499 0.94351 0.83948 1.04560 1.22855 0.91489 0.95836 0.98792 1.62206 1.55907 1.01940 1.03962 1.22190 0.99046 1.00547 0.87935 1.21075 0.82313 0.84777 0.82546 1.90706 1.41231 1.42977 1.69394 1.45882 1.46746 1.37569 1.06194 1.21791 0.90558 0.91722 0.91767 0.90361 1.22610 0.96609 0.99983 0.96665 1.22125 0.97082 0.99479 0.96999 1.21827 0.95519 1.00365 0.93558 0.91054 1.20900 0.90572 0.95801 0.89065 1.42760 1.35014 1.56990 1.05682 1.19060 1.10284 1.22100 0.84939 0.92442 1.25509 1.01609 1.02746 0.95840 1.69879 1.37469 1.50164 1.05935 0.85433 0.78595 0.79183 0.78766 1.20552 1.22206 1.17597 1.22504 0.96853 1.02605 0.92756 1.22387 0.85798 0.94632 1.05511 1.21677 0.92858 0.83361 0.75467 1.90698 1.68393 1.36490 1.52399 0.92087 0.89884 0.90290 0.87034 0.89275 0.88796 0.84948 0.90739 0.83481 0.74775 0.90403 0.92155 0.92147 0.92339 0.95801 0.95381 0.80179 0.93370 0.90251 0.89164 0.86289 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.55 127.77 1.35 2.01 16 2 N -0.61 -6.78 3.04 -850.20 -2.58 -9.36 16 3 C 0.07 0.16 5.71 86.47 0.49 0.65 16 4 C 0.04 0.13 6.03 86.25 0.52 0.65 16 5 N -0.52 -6.07 4.73 -905.47 -4.28 -10.34 16 6 C 0.03 0.32 4.53 85.56 0.39 0.71 16 7 C 0.51 9.23 7.27 87.66 0.64 9.87 16 8 O -0.57 -15.56 14.44 -3.02 -0.04 -15.61 16 9 N -0.71 -10.96 5.18 -436.38 -2.26 -13.22 16 10 C 0.15 3.02 3.27 46.29 0.15 3.17 16 11 H 0.08 1.95 7.55 -2.39 -0.02 1.93 16 12 C -0.12 -2.69 6.51 31.67 0.21 -2.48 16 13 C -0.12 -3.24 6.18 31.32 0.19 -3.05 16 14 C -0.09 -2.59 2.96 -10.07 -0.03 -2.62 16 15 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 16 C 0.16 5.93 5.27 86.38 0.46 6.38 16 17 N -0.76 -35.46 5.19 -343.44 -1.78 -37.24 16 18 C -0.23 -13.39 10.47 84.03 0.88 -12.51 16 19 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 21 N -0.98 -63.58 13.97 21.65 0.30 -63.28 16 22 Si 0.95 46.09 27.74 68.60 1.90 47.99 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 25 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 26 C -0.11 -2.22 5.98 31.68 0.19 -2.03 16 27 C 0.05 0.84 5.51 85.42 0.47 1.31 16 28 C 0.48 9.22 6.83 87.68 0.60 9.82 16 29 O -0.60 -17.45 16.07 -3.02 -0.05 -17.50 16 30 H 0.06 1.00 6.68 -2.39 -0.02 0.98 16 31 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.11 -0.23 8.12 -2.39 -0.02 -0.25 16 34 H 0.09 -0.04 7.07 -2.38 -0.02 -0.06 16 35 H 0.09 0.34 8.08 -2.39 -0.02 0.32 16 36 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 37 H 0.07 0.62 6.20 -2.39 -0.01 0.61 16 38 H 0.15 0.44 8.09 -2.39 -0.02 0.42 16 39 H 0.42 3.75 8.57 -92.71 -0.79 2.96 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.06 1.84 7.61 -2.38 -0.02 1.83 16 44 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.37 16.42 5.41 -92.71 -0.50 15.92 16 47 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 48 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.09 1.59 7.73 -2.39 -0.02 1.57 16 50 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 51 H 0.09 2.25 6.02 -2.39 -0.01 2.23 16 Total: -1.00 -84.76 396.72 -2.24 -87.00 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -0.42 Total: 23.13 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 6.97 Total: 8.43 kcal Atomic # 7 Polarization: -122.84 SS G_CDS: -10.60 Total: -133.44 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.09 Total: -33.11 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 47.99 kcal Total: -84.76 -2.24 -87.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717875817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.952 kcal (2) G-P(sol) polarization free energy of solvation -84.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds