Wall clock time and date at job start Tue Mar 31 2020 21:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47417 * 2 1 4 4 N 1.46495 * 109.46906 * 239.99739 * 2 1 3 5 5 C 1.34780 * 119.99619 * 85.00637 * 4 2 1 6 6 N 1.34778 * 119.99762 * 179.97438 * 5 4 2 7 7 O 1.21586 * 120.00374 * 359.97438 * 5 4 2 8 8 C 1.50706 * 109.46934 * 120.00293 * 2 1 3 9 9 O 1.21278 * 119.99814 * 102.80001 * 8 2 1 10 10 N 1.34770 * 119.99723 * 283.08016 * 8 2 1 11 11 C 1.44553 * 118.70643 * 185.06694 * 10 8 2 12 12 C 1.54753 * 109.61119 * 270.60667 * 11 10 8 13 13 C 1.47066 * 110.52156 * 288.36498 * 12 11 10 14 14 C 1.52803 * 114.32313 * 62.90526 * 13 12 11 15 15 C 1.50727 * 109.28132 * 275.69660 * 14 13 12 16 16 C 1.54000 * 110.87817 * 213.00145 * 15 14 13 17 17 C 1.54462 * 104.82027 * 120.03794 * 16 15 14 18 18 N 1.48185 * 104.62122 * 23.87223 * 17 16 15 19 19 C 1.36938 * 127.79939 * 140.64260 * 18 17 16 20 20 H 1.08002 * 119.99750 * 193.37536 * 19 18 17 21 21 C 1.38816 * 120.00086 * 13.37992 * 19 18 17 22 22 N 1.31619 * 120.00218 * 12.27529 * 21 19 18 23 23 Si 1.86798 * 119.99983 * 192.27197 * 21 19 18 24 24 H 1.48508 * 109.47171 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47076 * 119.99978 * 23 21 19 26 26 H 1.48503 * 109.47192 * 240.00200 * 23 21 19 27 27 C 1.48232 * 104.39677 * 320.64649 * 18 17 16 28 28 C 1.47652 * 118.71026 * 4.79360 * 10 8 2 29 29 H 1.09006 * 109.46814 * 52.80617 * 1 2 3 30 30 H 1.09001 * 109.47380 * 172.80741 * 1 2 3 31 31 H 1.08998 * 109.47014 * 292.80916 * 1 2 3 32 32 H 0.96993 * 120.00691 * 265.00137 * 4 2 1 33 33 H 0.96997 * 120.00397 * 0.02562 * 6 5 4 34 34 H 0.97006 * 119.99633 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.44747 * 30.65213 * 11 10 8 36 36 H 1.09001 * 109.44478 * 150.59049 * 11 10 8 37 37 H 1.09011 * 109.26199 * 48.63051 * 12 11 10 38 38 H 1.08994 * 109.26789 * 168.08864 * 12 11 10 39 39 H 1.09002 * 108.51340 * 184.15956 * 13 12 11 40 40 H 1.09001 * 108.51635 * 301.64734 * 13 12 11 41 41 H 1.08995 * 109.50443 * 35.63832 * 14 13 12 42 42 H 1.09003 * 109.50733 * 155.75315 * 14 13 12 43 43 H 1.09003 * 110.36672 * 238.87354 * 16 15 14 44 44 H 1.08995 * 110.36791 * 1.20378 * 16 15 14 45 45 H 1.09002 * 110.40903 * 142.65770 * 17 16 15 46 46 H 1.09001 * 110.40672 * 264.96986 * 17 16 15 47 47 H 0.96996 * 120.00173 * 179.97438 * 22 21 19 48 48 H 1.09000 * 110.41387 * 280.41392 * 27 18 17 49 49 H 1.08995 * 110.41855 * 157.96181 * 27 18 17 50 50 H 1.08998 * 108.97040 * 258.68922 * 28 10 8 51 51 H 1.08999 * 108.96485 * 17.37597 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 7 2.5968 -0.6535 -3.4574 7 8 1.8576 1.1614 -2.4118 8 6 2.0323 -0.7105 1.2305 9 8 2.4538 -1.8446 1.1462 10 7 2.0079 -0.0876 2.4254 11 6 2.5974 -0.7511 3.5664 12 6 1.5304 -1.6262 4.2668 13 6 0.5493 -0.7824 4.9657 14 6 -0.2614 0.1318 4.0481 15 6 0.5210 1.3929 3.7844 16 6 -0.4218 2.5996 3.6210 17 6 -0.0070 3.5794 4.7407 18 7 1.3982 3.2233 5.0479 19 6 2.4361 4.0706 5.3310 20 1 3.4512 3.7019 5.3249 21 6 2.1835 5.4033 5.6259 22 7 0.9532 5.8012 5.8716 23 14 3.5897 6.6320 5.6742 24 1 4.8650 5.9373 5.3638 25 1 3.3500 7.6983 4.6689 26 1 3.6719 7.2373 7.0278 27 6 1.4267 1.7429 4.9793 28 6 1.3854 1.2482 2.5163 29 1 -0.3633 0.6213 -0.8187 30 1 -0.3634 -1.0196 -0.1287 31 1 -0.3633 0.3984 0.9473 32 1 2.2490 -1.6318 -1.1526 33 1 2.8274 -1.5946 -3.4139 34 1 2.6891 -0.1696 -4.2931 35 1 3.4222 -1.3812 3.2336 36 1 2.9709 -0.0044 4.2672 37 1 1.0166 -2.2327 3.5209 38 1 2.0194 -2.2815 4.9875 39 1 -0.1408 -1.4297 5.5068 40 1 1.0787 -0.1640 5.6906 41 1 -0.4565 -0.3792 3.1054 42 1 -1.2068 0.3839 4.5285 43 1 -0.2824 3.0601 2.6429 44 1 -1.4589 2.2911 3.7518 45 1 -0.0697 4.6088 4.3875 46 1 -0.6369 3.4410 5.6195 47 1 0.7767 6.7324 6.0781 48 1 1.0278 1.3120 5.8977 49 1 2.4426 1.3898 4.8027 50 1 2.1702 2.0045 2.5301 51 1 0.7578 1.4070 1.6394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724125455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:17 Heat of formation + Delta-G solvation = -47.650734 kcal Electronic energy + Delta-G solvation = -32075.409152 eV Core-core repulsion = 28009.984832 eV Total energy + Delta-G solvation = -4065.424320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.16668 -40.92265 -39.86093 -37.29645 -36.16837 -35.16062 -34.76356 -34.45874 -32.44930 -31.22412 -30.23782 -28.38154 -27.43810 -26.51822 -25.53894 -24.06936 -23.09179 -22.02386 -21.49559 -20.37632 -19.57482 -19.43499 -18.76526 -18.29455 -17.74469 -17.29312 -16.76708 -16.61496 -16.43395 -16.05969 -15.83265 -15.68454 -15.32298 -15.17272 -15.01925 -14.61253 -14.58212 -14.16674 -13.87698 -13.75426 -13.49478 -13.37901 -13.07489 -12.99817 -12.81663 -12.68836 -12.57930 -12.44478 -12.11107 -12.04357 -11.89801 -11.62565 -11.54993 -11.50073 -11.33840 -11.08009 -10.97593 -10.84664 -10.71458 -10.56624 -10.14416 -9.65442 -8.80751 -7.86410 -5.18306 1.38885 1.46230 1.48251 1.57233 1.62002 2.09626 2.19920 2.51027 3.21558 3.32212 3.59112 3.60352 3.72293 3.82447 3.99555 4.03579 4.05942 4.10571 4.13234 4.23095 4.47832 4.49884 4.52870 4.59157 4.70150 4.73026 4.76404 4.82740 4.86915 4.94815 5.08615 5.10754 5.17314 5.18259 5.25474 5.31898 5.33187 5.40616 5.44285 5.50360 5.57604 5.66278 5.68946 5.79986 5.83743 6.01691 6.24484 6.26382 6.96868 7.03984 7.08092 7.60719 7.76632 8.54006 9.26802 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.003707 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.851697 B = 7552.403627 C = 8760.280756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 H 0.097 0.903 4 N -0.722 5.722 5 C 0.703 3.297 6 N -0.845 5.845 7 O -0.639 6.639 8 C 0.513 3.487 9 O -0.561 6.561 10 N -0.586 5.586 11 C 0.105 3.895 12 C -0.115 4.115 13 C -0.136 4.136 14 C -0.091 4.091 15 C -0.067 4.067 16 C -0.120 4.120 17 C 0.158 3.842 18 N -0.619 5.619 19 C -0.229 4.229 20 H 0.077 0.923 21 C -0.061 4.061 22 N -0.944 5.944 23 Si 0.967 3.033 24 H -0.268 1.268 25 H -0.294 1.294 26 H -0.294 1.294 27 C 0.131 3.869 28 C 0.118 3.882 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.413 0.587 33 H 0.414 0.586 34 H 0.423 0.577 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.047 0.953 46 H -0.004 1.004 47 H 0.247 0.753 48 H 0.033 0.967 49 H 0.052 0.948 50 H 0.053 0.947 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.315 -18.949 -13.031 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.115 0.885 4 N -0.380 5.380 5 C 0.401 3.599 6 N -0.414 5.414 7 O -0.521 6.521 8 C 0.301 3.699 9 O -0.440 6.440 10 N -0.317 5.317 11 C -0.018 4.018 12 C -0.153 4.153 13 C -0.173 4.173 14 C -0.128 4.128 15 C -0.070 4.070 16 C -0.159 4.159 17 C 0.032 3.968 18 N -0.343 5.343 19 C -0.358 4.358 20 H 0.094 0.906 21 C -0.255 4.255 22 N -0.593 5.593 23 Si 0.796 3.204 24 H -0.192 1.192 25 H -0.221 1.221 26 H -0.222 1.222 27 C 0.007 3.993 28 C -0.004 4.004 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.251 0.749 33 H 0.245 0.755 34 H 0.256 0.744 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.066 0.934 46 H 0.014 0.986 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.260 -18.356 -12.848 22.441 hybrid contribution 0.946 0.690 0.185 1.185 sum -0.314 -17.666 -12.663 21.738 Atomic orbital electron populations 1.22225 0.91445 1.03887 1.04068 1.20589 0.96705 0.96864 0.82540 0.88518 1.44702 1.71190 1.14575 1.07564 1.16090 0.77984 0.84402 0.81431 1.42734 1.71911 1.15737 1.11008 1.90967 1.59298 1.16402 1.85403 1.20682 0.78012 0.86152 0.85077 1.90634 1.48683 1.18536 1.86183 1.47653 1.56889 1.18826 1.08290 1.21703 0.96173 0.96425 0.87461 1.21003 0.96864 0.97749 0.99727 1.20727 0.98707 0.98616 0.99282 1.21095 0.97911 0.93567 1.00254 1.21295 0.95351 0.95827 0.94478 1.22737 0.98740 0.95201 0.99256 1.21398 0.84370 0.97538 0.93468 1.45316 1.06453 1.01318 1.81221 1.19318 0.87058 0.90440 1.38997 0.90568 1.25531 0.98596 0.99556 1.01784 1.70100 1.19824 1.15479 1.53892 0.85184 0.79359 0.79226 0.76611 1.19212 1.22086 1.22164 1.22294 0.97453 0.83953 0.95595 1.22418 0.96684 0.81975 0.99291 0.91045 0.90636 0.89623 0.74869 0.75526 0.74389 0.90553 0.90155 0.92307 0.89828 0.91273 0.91396 0.91160 0.91080 0.91687 0.89583 0.93404 0.98572 0.94402 0.94932 0.92947 0.92825 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 8.99 71.98 0.65 -2.42 16 2 C 0.14 3.28 2.12 44.25 0.09 3.37 16 3 H 0.10 2.59 6.76 -2.39 -0.02 2.57 16 4 N -0.72 -14.62 5.04 -461.40 -2.32 -16.95 16 5 C 0.70 15.68 8.80 179.05 1.58 17.26 16 6 N -0.84 -10.32 8.88 -184.74 -1.64 -11.96 16 7 O -0.64 -20.42 16.84 -3.99 -0.07 -20.49 16 8 C 0.51 12.80 6.89 87.66 0.60 13.41 16 9 O -0.56 -15.66 15.39 -3.02 -0.05 -15.71 16 10 N -0.59 -14.66 2.27 -817.94 -1.86 -16.52 16 11 C 0.11 2.55 5.27 87.34 0.46 3.01 16 12 C -0.12 -2.42 5.72 29.35 0.17 -2.25 16 13 C -0.14 -3.00 4.94 28.68 0.14 -2.86 16 14 C -0.09 -2.10 4.88 29.79 0.15 -1.96 16 15 C -0.07 -1.96 0.68 -51.86 -0.04 -1.99 16 16 C -0.12 -3.94 6.21 31.43 0.20 -3.74 16 17 C 0.16 7.28 5.93 86.55 0.51 7.80 16 18 N -0.62 -29.95 3.39 -688.50 -2.33 -32.28 16 19 C -0.23 -12.42 10.35 84.03 0.87 -11.55 16 20 H 0.08 4.01 7.86 -2.91 -0.02 3.98 16 21 C -0.06 -3.41 5.37 84.86 0.46 -2.95 16 22 N -0.94 -55.93 10.89 21.65 0.24 -55.70 16 23 Si 0.97 45.42 29.57 68.60 2.03 47.45 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 27 C 0.13 4.85 4.44 86.37 0.38 5.23 16 28 C 0.12 3.22 3.99 86.55 0.35 3.57 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.57 5.61 -2.39 -0.01 1.55 16 32 H 0.41 7.03 7.74 -92.71 -0.72 6.32 16 33 H 0.41 2.40 8.84 -92.71 -0.82 1.58 16 34 H 0.42 4.24 8.93 -92.70 -0.83 3.42 16 35 H 0.08 1.89 7.39 -2.39 -0.02 1.87 16 36 H 0.08 2.10 5.15 -2.39 -0.01 2.09 16 37 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.74 4.61 -2.39 -0.01 1.72 16 41 H 0.07 1.48 7.16 -2.39 -0.02 1.46 16 42 H 0.07 1.61 7.42 -2.39 -0.02 1.59 16 43 H 0.06 2.07 7.49 -2.39 -0.02 2.05 16 44 H 0.09 2.38 7.34 -2.39 -0.02 2.36 16 45 H 0.05 2.55 6.48 -2.39 -0.02 2.54 16 46 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 48 H 0.03 1.23 5.96 -2.39 -0.01 1.22 16 49 H 0.05 1.90 5.12 -2.39 -0.01 1.88 16 50 H 0.05 1.77 7.96 -2.39 -0.02 1.75 16 51 H 0.10 2.44 3.73 -2.39 -0.01 2.43 16 Total: -1.00 -72.42 376.88 -0.80 -73.22 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -1.36 Total: 25.01 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 6.56 Total: 23.92 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -7.92 Total: -133.40 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -0.11 Total: -36.19 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -72.42 -0.80 -73.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724125455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.574 kcal (2) G-P(sol) polarization free energy of solvation -72.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds