Wall clock time and date at job start Tue Mar 31 2020 21:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47216 * 2 1 4 4 C 1.53003 * 109.47331 * 119.99761 * 2 1 3 5 5 N 1.46505 * 109.46914 * 64.99872 * 4 2 1 6 6 N 1.40123 * 126.16277 * 95.00249 * 5 4 2 7 7 H 0.96999 * 125.91068 * 359.97438 * 6 5 4 8 8 C 1.36607 * 108.17636 * 180.24965 * 6 5 4 9 9 C 1.50696 * 125.77018 * 179.75044 * 8 6 5 10 10 C 1.50702 * 109.47471 * 274.99805 * 9 8 6 11 11 O 1.21278 * 119.99679 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99834 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99794 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47166 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.47108 * 294.99681 * 14 13 12 16 16 C 1.53008 * 109.47153 * 175.00068 * 14 13 12 17 17 N 1.46502 * 109.47578 * 54.99609 * 14 13 12 18 18 C 1.46498 * 119.99684 * 60.00029 * 17 14 13 19 19 C 1.36932 * 119.99844 * 240.00371 * 17 14 13 20 20 H 1.07992 * 120.00499 * 22.81786 * 19 17 14 21 21 C 1.38813 * 119.99418 * 202.81838 * 19 17 14 22 22 N 1.31620 * 120.00512 * 11.59595 * 21 19 17 23 23 Si 1.86806 * 119.99983 * 191.59610 * 21 19 17 24 24 H 1.48501 * 109.46963 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47034 * 119.99477 * 23 21 19 26 26 H 1.48498 * 109.47498 * 239.99933 * 23 21 19 27 27 C 1.34826 * 108.45117 * 359.62627 * 8 6 5 28 28 C 1.34866 * 126.16497 * 275.03053 * 5 4 2 29 29 O 1.21782 * 126.19576 * 359.95301 * 28 5 4 30 30 H 1.09000 * 109.46972 * 60.00162 * 1 2 3 31 31 H 1.08996 * 109.47490 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47153 * 300.00182 * 1 2 3 33 33 H 1.08999 * 109.47164 * 240.00249 * 2 1 3 34 34 H 1.09003 * 109.47234 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47018 * 299.99810 * 3 2 1 36 36 H 1.08999 * 109.46851 * 60.00057 * 3 2 1 37 37 H 1.08995 * 109.47089 * 305.00218 * 4 2 1 38 38 H 1.08994 * 109.47369 * 184.99647 * 4 2 1 39 39 H 1.09002 * 109.47131 * 35.00514 * 9 8 6 40 40 H 1.09003 * 109.46948 * 154.99828 * 9 8 6 41 41 H 0.97001 * 120.00394 * 359.97438 * 12 10 9 42 42 H 1.09010 * 109.47055 * 299.99681 * 13 12 10 43 43 H 1.09003 * 109.47272 * 59.99517 * 13 12 10 44 44 H 1.08994 * 109.47232 * 59.99565 * 16 14 13 45 45 H 1.09003 * 109.46985 * 180.02562 * 16 14 13 46 46 H 1.09000 * 109.46978 * 299.99295 * 16 14 13 47 47 H 1.09006 * 109.47206 * 93.84957 * 18 17 14 48 48 H 1.09001 * 109.47119 * 213.85124 * 18 17 14 49 49 H 1.09003 * 109.47301 * 333.85022 * 18 17 14 50 50 H 0.96998 * 119.99940 * 180.02562 * 22 21 19 51 51 H 1.08003 * 125.95673 * 180.14455 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 7 2.4407 -3.1875 0.7114 7 1 3.3411 -3.1102 0.3590 8 6 1.7194 -4.3424 0.8205 9 6 2.1882 -5.7156 0.4138 10 6 1.9277 -5.9205 -1.0563 11 8 1.4125 -5.0380 -1.7096 12 7 2.2673 -7.0843 -1.6451 13 6 2.0146 -7.2832 -3.0744 14 6 2.4893 -8.6779 -3.4869 15 1 3.5716 -8.7415 -3.3739 16 6 2.1132 -8.9331 -4.9480 17 7 1.8495 -9.6835 -2.6351 18 6 0.3894 -9.7999 -2.6095 19 6 2.6163 -10.5145 -1.8628 20 1 3.6177 -10.2215 -1.5843 21 6 2.1063 -11.7336 -1.4378 22 7 0.9876 -12.1954 -1.9552 23 14 3.0077 -12.7188 -0.1315 24 1 4.2302 -11.9861 0.2854 25 1 2.1208 -12.9100 1.0441 26 1 3.3883 -14.0432 -0.6850 27 6 0.5181 -4.0462 1.3563 28 6 0.4724 -2.6513 1.5877 29 8 -0.4630 -2.0311 2.0605 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -0.2617 2.1369 38 1 3.1263 -0.6443 1.2952 39 1 3.2565 -5.8077 0.6098 40 1 1.6475 -6.4688 0.9870 41 1 2.6797 -7.7899 -1.1227 42 1 0.9463 -7.1906 -3.2708 43 1 2.5559 -6.5303 -3.6473 44 1 2.5893 -8.1850 -5.5817 45 1 2.4511 -9.9270 -5.2417 46 1 1.0310 -8.8696 -5.0610 47 1 0.0726 -10.5574 -3.3265 48 1 0.0653 -10.0880 -1.6095 49 1 -0.0563 -8.8408 -2.8736 50 1 0.6311 -13.0471 -1.6579 51 1 -0.2729 -4.7505 1.5681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725174329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:47 Heat of formation + Delta-G solvation = 17.306390 kcal Electronic energy + Delta-G solvation = -29972.881696 eV Core-core repulsion = 25910.274129 eV Total energy + Delta-G solvation = -4062.607568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.68057 -39.44001 -37.19747 -36.70899 -36.56906 -33.87098 -33.07932 -32.07694 -29.97862 -29.89627 -29.25162 -27.37483 -26.34465 -26.08604 -25.15128 -23.10906 -21.37571 -21.04230 -20.42068 -20.05148 -19.36083 -18.09686 -17.07832 -16.85391 -16.14545 -15.91658 -15.74578 -15.50610 -15.13966 -14.91986 -14.49855 -14.09132 -13.98938 -13.67975 -13.55957 -13.36294 -12.97063 -12.89758 -12.80540 -12.59494 -12.48090 -12.43261 -12.30475 -12.22027 -11.85183 -11.49215 -11.45463 -11.15800 -11.13042 -11.04572 -10.89849 -10.82726 -10.45794 -10.33477 -9.97371 -9.85153 -9.79748 -9.70354 -9.19976 -8.68380 -8.62862 -7.87287 -6.87534 -5.82307 -3.30390 1.46902 1.64436 2.79733 3.27059 3.29481 3.35394 3.38921 3.58489 3.70878 4.31540 4.38055 4.40328 4.47285 4.70408 4.86167 4.98334 5.02782 5.08261 5.28216 5.29384 5.31393 5.35448 5.42753 5.47099 5.52038 5.59902 5.66761 5.79772 5.82613 5.84115 5.91067 6.01964 6.05083 6.12565 6.24152 6.25347 6.36835 6.37613 6.68868 6.78467 6.79866 6.95108 7.12129 7.33858 7.42037 7.64296 7.73452 7.86402 8.28792 8.34331 8.47056 9.12981 9.75900 10.25585 11.21966 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.002372 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.235976 B =11799.888946 C =12547.821298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.144 4.144 4 C 0.139 3.861 5 N -0.416 5.416 6 N -0.492 5.492 7 H 0.437 0.563 8 C 0.216 3.784 9 C -0.092 4.092 10 C 0.509 3.491 11 O -0.545 6.545 12 N -0.701 5.701 13 C 0.107 3.893 14 C 0.158 3.842 15 H 0.068 0.932 16 C -0.157 4.157 17 N -0.594 5.594 18 C 0.165 3.835 19 C -0.263 4.263 20 H 0.069 0.931 21 C 0.006 3.994 22 N -0.902 5.902 23 Si 0.903 3.097 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C -0.337 4.337 28 C 0.537 3.463 29 O -0.555 6.555 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.412 0.588 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.041 0.959 45 H 0.059 0.941 46 H 0.050 0.950 47 H 0.027 0.973 48 H 0.043 0.957 49 H -0.002 1.002 50 H 0.253 0.747 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.069 19.473 3.891 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 C -0.202 4.202 4 C 0.018 3.982 5 N -0.239 5.239 6 N -0.213 5.213 7 H 0.282 0.718 8 C 0.099 3.901 9 C -0.133 4.133 10 C 0.293 3.707 11 O -0.424 6.424 12 N -0.352 5.352 13 C -0.019 4.019 14 C 0.049 3.951 15 H 0.086 0.914 16 C -0.217 4.217 17 N -0.317 5.317 18 C 0.020 3.980 19 C -0.392 4.392 20 H 0.087 0.913 21 C -0.194 4.194 22 N -0.546 5.546 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C -0.368 4.368 28 C 0.336 3.664 29 O -0.435 6.435 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.248 0.752 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.045 0.955 48 H 0.062 0.938 49 H 0.017 0.983 50 H 0.063 0.937 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.178 20.545 3.741 21.777 hybrid contribution 1.103 -1.155 0.529 1.683 sum 7.282 19.389 4.271 21.147 Atomic orbital electron populations 1.21854 0.93690 1.03167 1.01506 1.21615 0.97791 0.96301 0.97903 1.21782 1.00706 0.95192 1.02520 1.21802 1.00474 0.76044 0.99842 1.48478 1.13096 1.01316 1.61019 1.43778 1.14692 0.99466 1.63343 0.71840 1.20093 0.91353 0.86295 0.92397 1.20544 1.04747 0.92224 0.95828 1.20105 0.79201 0.82908 0.88441 1.90738 1.43457 1.42804 1.65373 1.45855 1.61720 1.16164 1.11497 1.21969 1.01112 0.98755 0.80031 1.20614 0.96886 0.87324 0.90295 0.91404 1.22192 1.01257 1.01141 0.97095 1.44000 1.02192 1.37802 1.47724 1.20732 0.82268 0.94276 1.00696 1.19208 0.98365 0.97082 1.24558 0.91309 1.25058 0.97782 0.96431 1.00095 1.70079 1.21620 1.19854 1.43050 0.86225 0.78930 0.80125 0.81400 1.20343 1.21616 1.21800 1.21715 0.99738 0.96596 1.18784 1.16917 0.80570 0.88910 0.80036 1.90843 1.34370 1.68477 1.49780 0.93030 0.91767 0.92259 0.90822 0.92632 0.91999 0.92251 0.88262 0.89918 0.87051 0.84975 0.75181 0.91972 0.92536 0.94025 0.92193 0.93132 0.95490 0.93780 0.98346 0.93696 0.82292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.28 37.16 0.31 -1.35 16 2 C -0.12 -1.04 3.13 -90.62 -0.28 -1.32 16 3 C -0.14 -0.93 9.19 37.16 0.34 -0.58 16 4 C 0.14 1.21 5.82 -4.04 -0.02 1.19 16 5 N -0.42 -4.85 3.52 -63.24 -0.22 -5.07 16 6 N -0.49 -4.85 7.30 33.67 0.25 -4.61 16 7 H 0.44 2.91 8.96 -182.58 -1.64 1.27 16 8 C 0.22 2.48 5.70 -81.68 -0.47 2.01 16 9 C -0.09 -0.89 6.23 -29.04 -0.18 -1.07 16 10 C 0.51 7.07 7.82 -10.99 -0.09 6.99 16 11 O -0.55 -9.61 16.03 5.56 0.09 -9.52 16 12 N -0.70 -10.21 5.39 -60.29 -0.32 -10.53 16 13 C 0.11 1.71 4.93 -4.04 -0.02 1.69 16 14 C 0.16 2.79 2.87 -67.93 -0.19 2.60 16 15 H 0.07 1.18 7.86 -51.93 -0.41 0.77 16 16 C -0.16 -2.63 9.19 37.16 0.34 -2.29 16 17 N -0.59 -12.94 2.29 -173.48 -0.40 -13.34 16 18 C 0.16 3.77 8.00 59.85 0.48 4.25 16 19 C -0.26 -6.30 9.33 -15.06 -0.14 -6.44 16 20 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 21 C 0.01 0.14 5.12 -17.43 -0.09 0.05 16 22 N -0.90 -24.68 10.63 55.49 0.59 -24.09 16 23 Si 0.90 20.08 29.57 -169.99 -5.03 15.06 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 C -0.34 -4.74 10.73 -39.56 -0.42 -5.17 16 28 C 0.54 8.23 6.53 -14.99 -0.10 8.13 16 29 O -0.55 -10.13 16.34 5.12 0.08 -10.05 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.95 5.73 -51.93 -0.30 0.65 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.41 5.93 7.89 -40.82 -0.32 5.61 16 42 H 0.06 1.11 6.86 -51.92 -0.36 0.75 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.87 7.67 -51.93 -0.40 0.47 16 47 H 0.03 0.68 7.43 -51.93 -0.39 0.30 16 48 H 0.04 1.09 7.20 -51.93 -0.37 0.72 16 49 H 0.00 -0.04 6.53 -51.93 -0.34 -0.38 16 50 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 51 H 0.16 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 411.44 15.07 6.20 6.20 Total: -1.00 -33.26 411.44 -9.28 -42.54 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -9.98 Total: 4.71 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -0.54 Total: 8.70 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.11 Total: -57.64 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.17 Total: -19.57 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.26 -9.28 -42.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725174329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.846 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds