Wall clock time and date at job start Tue Mar 31 2020 21:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47216 * 2 1 4 4 C 1.53003 * 109.47331 * 119.99761 * 2 1 3 5 5 N 1.46505 * 109.46914 * 64.99872 * 4 2 1 6 6 N 1.40123 * 126.16277 * 95.00249 * 5 4 2 7 7 H 0.96999 * 125.91068 * 359.97438 * 6 5 4 8 8 C 1.36607 * 108.17636 * 180.24965 * 6 5 4 9 9 C 1.50696 * 125.77018 * 179.75044 * 8 6 5 10 10 C 1.50702 * 109.47471 * 274.99805 * 9 8 6 11 11 O 1.21278 * 119.99679 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99834 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99794 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.47166 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.47108 * 294.99681 * 14 13 12 16 16 C 1.53008 * 109.47153 * 175.00068 * 14 13 12 17 17 N 1.46502 * 109.47578 * 54.99609 * 14 13 12 18 18 C 1.46498 * 119.99684 * 60.00029 * 17 14 13 19 19 C 1.36932 * 119.99844 * 240.00371 * 17 14 13 20 20 H 1.07992 * 120.00499 * 22.81786 * 19 17 14 21 21 C 1.38813 * 119.99418 * 202.81838 * 19 17 14 22 22 N 1.31620 * 120.00512 * 11.59595 * 21 19 17 23 23 Si 1.86806 * 119.99983 * 191.59610 * 21 19 17 24 24 H 1.48501 * 109.46963 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47034 * 119.99477 * 23 21 19 26 26 H 1.48498 * 109.47498 * 239.99933 * 23 21 19 27 27 C 1.34826 * 108.45117 * 359.62627 * 8 6 5 28 28 C 1.34866 * 126.16497 * 275.03053 * 5 4 2 29 29 O 1.21782 * 126.19576 * 359.95301 * 28 5 4 30 30 H 1.09000 * 109.46972 * 60.00162 * 1 2 3 31 31 H 1.08996 * 109.47490 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47153 * 300.00182 * 1 2 3 33 33 H 1.08999 * 109.47164 * 240.00249 * 2 1 3 34 34 H 1.09003 * 109.47234 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47018 * 299.99810 * 3 2 1 36 36 H 1.08999 * 109.46851 * 60.00057 * 3 2 1 37 37 H 1.08995 * 109.47089 * 305.00218 * 4 2 1 38 38 H 1.08994 * 109.47369 * 184.99647 * 4 2 1 39 39 H 1.09002 * 109.47131 * 35.00514 * 9 8 6 40 40 H 1.09003 * 109.46948 * 154.99828 * 9 8 6 41 41 H 0.97001 * 120.00394 * 359.97438 * 12 10 9 42 42 H 1.09010 * 109.47055 * 299.99681 * 13 12 10 43 43 H 1.09003 * 109.47272 * 59.99517 * 13 12 10 44 44 H 1.08994 * 109.47232 * 59.99565 * 16 14 13 45 45 H 1.09003 * 109.46985 * 180.02562 * 16 14 13 46 46 H 1.09000 * 109.46978 * 299.99295 * 16 14 13 47 47 H 1.09006 * 109.47206 * 93.84957 * 18 17 14 48 48 H 1.09001 * 109.47119 * 213.85124 * 18 17 14 49 49 H 1.09003 * 109.47301 * 333.85022 * 18 17 14 50 50 H 0.96998 * 119.99940 * 180.02562 * 22 21 19 51 51 H 1.08003 * 125.95673 * 180.14455 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 7 2.4407 -3.1875 0.7114 7 1 3.3411 -3.1102 0.3590 8 6 1.7194 -4.3424 0.8205 9 6 2.1882 -5.7156 0.4138 10 6 1.9277 -5.9205 -1.0563 11 8 1.4125 -5.0380 -1.7096 12 7 2.2673 -7.0843 -1.6451 13 6 2.0146 -7.2832 -3.0744 14 6 2.4893 -8.6779 -3.4869 15 1 3.5716 -8.7415 -3.3739 16 6 2.1132 -8.9331 -4.9480 17 7 1.8495 -9.6835 -2.6351 18 6 0.3894 -9.7999 -2.6095 19 6 2.6163 -10.5145 -1.8628 20 1 3.6177 -10.2215 -1.5843 21 6 2.1063 -11.7336 -1.4378 22 7 0.9876 -12.1954 -1.9552 23 14 3.0077 -12.7188 -0.1315 24 1 4.2302 -11.9861 0.2854 25 1 2.1208 -12.9100 1.0441 26 1 3.3883 -14.0432 -0.6850 27 6 0.5181 -4.0462 1.3563 28 6 0.4724 -2.6513 1.5877 29 8 -0.4630 -2.0311 2.0605 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6054 -0.2617 2.1369 38 1 3.1263 -0.6443 1.2952 39 1 3.2565 -5.8077 0.6098 40 1 1.6475 -6.4688 0.9870 41 1 2.6797 -7.7899 -1.1227 42 1 0.9463 -7.1906 -3.2708 43 1 2.5559 -6.5303 -3.6473 44 1 2.5893 -8.1850 -5.5817 45 1 2.4511 -9.9270 -5.2417 46 1 1.0310 -8.8696 -5.0610 47 1 0.0726 -10.5574 -3.3265 48 1 0.0653 -10.0880 -1.6095 49 1 -0.0563 -8.8408 -2.8736 50 1 0.6311 -13.0471 -1.6579 51 1 -0.2729 -4.7505 1.5681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725174329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:46 Heat of formation + Delta-G solvation = -5.247108 kcal Electronic energy + Delta-G solvation = -29973.859689 eV Core-core repulsion = 25910.274129 eV Total energy + Delta-G solvation = -4063.585561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.66124 -40.61985 -38.47869 -38.04409 -37.39789 -35.34892 -34.05312 -33.57919 -31.26086 -30.94197 -30.52829 -28.14463 -27.97127 -27.35283 -26.21094 -24.85105 -22.39611 -21.99129 -21.26253 -21.20509 -20.79666 -19.02204 -18.79335 -18.00083 -17.15570 -17.10177 -16.92712 -16.79165 -16.37133 -15.83085 -15.75706 -15.52062 -15.08413 -14.74539 -14.57028 -14.54586 -14.36201 -14.28768 -13.86163 -13.80870 -13.58541 -13.45618 -13.19024 -13.07775 -12.99511 -12.87267 -12.79219 -12.63218 -12.46943 -12.25602 -12.21535 -12.00218 -11.94131 -11.77740 -11.73037 -11.45121 -10.96160 -10.84366 -10.57680 -10.13774 -9.88614 -8.89864 -8.72860 -7.73610 -5.21985 0.51336 0.75855 1.54183 1.56870 1.65250 1.71359 2.16819 2.50131 2.58562 2.82996 3.42840 3.46297 3.68803 3.69834 3.77058 3.96796 4.00044 4.11056 4.19990 4.25629 4.39077 4.42781 4.57764 4.60726 4.62805 4.65185 4.72433 4.77369 4.80798 4.83536 4.91574 4.97820 4.99480 5.01252 5.08602 5.13069 5.28206 5.28480 5.33932 5.40131 5.41781 5.46954 5.64756 5.75090 5.80643 6.15605 6.40755 6.60616 6.72730 7.22616 7.27871 7.35564 7.94432 8.40814 9.30416 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.002372 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.235976 B =11799.888946 C =12547.821298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.138 4.138 4 C 0.132 3.868 5 N -0.412 5.412 6 N -0.469 5.469 7 H 0.456 0.544 8 C 0.235 3.765 9 C -0.082 4.082 10 C 0.512 3.488 11 O -0.585 6.585 12 N -0.701 5.701 13 C 0.118 3.882 14 C 0.157 3.843 15 H 0.080 0.920 16 C -0.151 4.151 17 N -0.602 5.602 18 C 0.185 3.815 19 C -0.249 4.249 20 H 0.088 0.912 21 C -0.056 4.056 22 N -0.942 5.942 23 Si 0.964 3.036 24 H -0.254 1.254 25 H -0.300 1.300 26 H -0.306 1.306 27 C -0.378 4.378 28 C 0.517 3.483 29 O -0.602 6.602 30 H 0.057 0.943 31 H 0.026 0.974 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.159 0.841 40 H 0.148 0.852 41 H 0.415 0.585 42 H 0.041 0.959 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.039 0.961 46 H 0.039 0.961 47 H -0.005 1.005 48 H 0.017 0.983 49 H 0.016 0.984 50 H 0.243 0.757 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.855 21.000 4.085 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 C -0.195 4.195 4 C 0.013 3.987 5 N -0.233 5.233 6 N -0.191 5.191 7 H 0.305 0.695 8 C 0.114 3.886 9 C -0.123 4.123 10 C 0.298 3.702 11 O -0.466 6.466 12 N -0.351 5.351 13 C -0.008 4.008 14 C 0.050 3.950 15 H 0.098 0.902 16 C -0.211 4.211 17 N -0.325 5.325 18 C 0.040 3.960 19 C -0.379 4.379 20 H 0.106 0.894 21 C -0.251 4.251 22 N -0.590 5.590 23 Si 0.794 3.206 24 H -0.177 1.177 25 H -0.227 1.227 26 H -0.234 1.234 27 C -0.409 4.409 28 C 0.316 3.684 29 O -0.487 6.487 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.142 0.858 39 H 0.177 0.823 40 H 0.166 0.834 41 H 0.252 0.748 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.014 0.986 48 H 0.036 0.964 49 H 0.035 0.965 50 H 0.052 0.948 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.072 22.128 3.916 24.626 hybrid contribution -0.021 -1.557 0.367 1.600 sum 10.052 20.570 4.283 23.292 Atomic orbital electron populations 1.21814 0.96082 1.00617 1.01498 1.21568 0.95607 0.98173 0.97662 1.21737 1.01998 0.92996 1.02804 1.22119 1.02865 0.74169 0.99576 1.48522 1.12468 1.02575 1.59741 1.43879 1.15021 0.98611 1.61609 0.69534 1.20234 0.90396 0.87408 0.90566 1.20618 1.07924 0.91129 0.92590 1.20665 0.77852 0.81866 0.89803 1.90738 1.45105 1.43992 1.66751 1.45824 1.61790 1.16578 1.10943 1.21715 0.99920 0.97772 0.81370 1.20789 0.97230 0.86881 0.90090 0.90175 1.22101 1.00831 1.01109 0.97066 1.44153 1.01632 1.38198 1.48544 1.20355 0.83467 0.94015 0.98153 1.19661 0.98682 0.96447 1.23106 0.89405 1.25794 0.98766 0.98016 1.02519 1.70260 1.23656 1.20031 1.45031 0.85244 0.78483 0.78233 0.78661 1.17747 1.22743 1.23377 1.21762 1.01258 0.96363 1.21521 1.17138 0.81182 0.89515 0.80526 1.90789 1.36179 1.69432 1.52261 0.92397 0.95528 0.92878 0.91413 0.90453 0.91926 0.91836 0.88677 0.85845 0.82308 0.83425 0.74785 0.94083 0.90769 0.90567 0.94151 0.94190 0.98643 0.96410 0.96522 0.94785 0.83035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.28 71.98 0.60 -2.75 16 2 C -0.11 -1.81 3.13 -10.79 -0.03 -1.84 16 3 C -0.14 -1.42 9.19 71.98 0.66 -0.75 16 4 C 0.13 2.04 5.82 86.38 0.50 2.55 16 5 N -0.41 -9.15 3.52 -472.12 -1.66 -10.81 16 6 N -0.47 -7.96 7.30 -47.38 -0.35 -8.31 16 7 H 0.46 4.13 8.96 -213.31 -1.91 2.22 16 8 C 0.23 4.89 5.70 41.03 0.23 5.12 16 9 C -0.08 -1.28 6.23 29.10 0.18 -1.10 16 10 C 0.51 12.81 7.82 87.66 0.69 13.49 16 11 O -0.58 -19.60 16.03 -3.02 -0.05 -19.65 16 12 N -0.70 -18.34 5.39 -463.06 -2.49 -20.83 16 13 C 0.12 3.49 4.93 86.38 0.43 3.92 16 14 C 0.16 5.20 2.87 44.99 0.13 5.33 16 15 H 0.08 2.49 7.86 -2.39 -0.02 2.47 16 16 C -0.15 -4.80 9.19 71.98 0.66 -4.14 16 17 N -0.60 -25.55 2.29 -702.77 -1.61 -27.16 16 18 C 0.19 8.58 8.00 127.77 1.02 9.60 16 19 C -0.25 -11.50 9.33 84.03 0.78 -10.72 16 20 H 0.09 3.69 7.81 -2.91 -0.02 3.67 16 21 C -0.06 -2.85 5.12 84.86 0.43 -2.41 16 22 N -0.94 -52.80 10.63 21.65 0.23 -52.57 16 23 Si 0.96 40.93 29.57 68.60 2.03 42.96 16 24 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 25 H -0.30 -13.12 7.11 99.48 0.71 -12.42 16 26 H -0.31 -13.61 7.11 99.48 0.71 -12.90 16 27 C -0.38 -10.75 10.73 22.28 0.24 -10.51 16 28 C 0.52 16.30 6.53 85.02 0.56 16.86 16 29 O -0.60 -23.42 16.34 -4.61 -0.08 -23.50 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.03 0.82 5.73 -2.39 -0.01 0.80 16 32 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.16 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.42 10.49 7.89 -92.71 -0.73 9.76 16 42 H 0.04 1.40 6.86 -2.38 -0.02 1.39 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.04 1.33 7.67 -2.39 -0.02 1.32 16 47 H 0.00 -0.25 7.43 -2.38 -0.02 -0.27 16 48 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 49 H 0.02 0.69 6.53 -2.39 -0.02 0.67 16 50 H 0.24 13.49 8.31 -92.71 -0.77 12.72 16 51 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -76.83 411.44 1.39 -75.44 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -1.71 Total: 21.79 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 7.08 Total: 22.63 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -5.88 Total: -119.68 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -0.12 Total: -43.15 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -76.83 1.39 -75.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725174329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.189 kcal (2) G-P(sol) polarization free energy of solvation -76.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds