Wall clock time and date at job start Tue Mar 31 2020 21:16:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46495 * 109.47211 * 2 1
4 4 N 1.28445 * 125.19123 * 85.53104 * 3 2 1
5 5 C 1.30863 * 110.92647 * 179.97438 * 4 3 2
6 6 C 1.50697 * 126.06643 * 179.97438 * 5 4 3
7 7 C 1.52997 * 109.47567 * 265.02897 * 6 5 4
8 8 C 1.53010 * 109.46937 * 145.02881 * 6 5 4
9 9 C 1.39676 * 107.86212 * 0.26627 * 5 4 3
10 10 C 1.36596 * 125.19010 * 265.52800 * 3 2 1
11 11 C 1.47165 * 126.88408 * 0.02562 * 10 3 2
12 12 O 1.21626 * 120.00085 * 343.15126 * 11 10 3
13 13 N 1.34774 * 120.00075 * 163.16051 * 11 10 3
14 14 C 1.46504 * 120.00093 * 359.88062 * 13 11 10
15 15 C 1.46503 * 120.00097 * 179.88823 * 13 11 10
16 16 C 1.53000 * 109.47252 * 89.99350 * 15 13 11
17 17 H 1.09004 * 109.47024 * 305.00117 * 16 15 13
18 18 O 1.42898 * 109.47294 * 65.00094 * 16 15 13
19 19 C 1.53001 * 109.46954 * 184.99983 * 16 15 13
20 20 N 1.46504 * 109.46874 * 179.97438 * 19 16 15
21 21 C 1.36936 * 119.99747 * 180.02562 * 20 19 16
22 22 H 1.08008 * 120.00363 * 359.97438 * 21 20 19
23 23 C 1.38816 * 119.99996 * 180.02562 * 21 20 19
24 24 N 1.31620 * 119.99619 * 359.97438 * 23 21 20
25 25 Si 1.86803 * 120.00093 * 180.02562 * 23 21 20
26 26 H 1.48498 * 109.46761 * 359.97438 * 25 23 21
27 27 H 1.48496 * 109.47485 * 119.99689 * 25 23 21
28 28 H 1.48499 * 109.46679 * 239.99794 * 25 23 21
29 29 H 1.09003 * 109.46782 * 304.98361 * 1 2 3
30 30 H 1.08997 * 109.47305 * 64.98861 * 1 2 3
31 31 H 1.09000 * 109.47451 * 184.99042 * 1 2 3
32 32 H 1.08997 * 109.46824 * 239.99673 * 2 1 3
33 33 H 1.09002 * 109.47110 * 120.00158 * 2 1 3
34 34 H 1.09001 * 109.47522 * 25.03403 * 6 5 4
35 35 H 1.09003 * 109.46867 * 300.00020 * 7 6 5
36 36 H 1.08997 * 109.46943 * 60.00160 * 7 6 5
37 37 H 1.09006 * 109.47356 * 180.02562 * 7 6 5
38 38 H 1.08995 * 109.47006 * 60.00010 * 8 6 5
39 39 H 1.08998 * 109.46543 * 180.02562 * 8 6 5
40 40 H 1.09003 * 109.46808 * 299.99996 * 8 6 5
41 41 H 1.07997 * 127.31665 * 179.73655 * 9 5 4
42 42 H 1.08996 * 109.46862 * 83.29347 * 14 13 11
43 43 H 1.09000 * 109.46989 * 203.29693 * 14 13 11
44 44 H 1.09004 * 109.46846 * 323.28954 * 14 13 11
45 45 H 1.09002 * 109.47112 * 209.99453 * 15 13 11
46 46 H 1.08998 * 109.46869 * 329.99716 * 15 13 11
47 47 H 0.96701 * 113.99836 * 59.99852 * 18 16 15
48 48 H 1.08994 * 109.47351 * 300.00057 * 19 16 15
49 49 H 1.09001 * 109.47167 * 60.00276 * 19 16 15
50 50 H 0.97000 * 120.00317 * 359.97438 * 20 19 16
51 51 H 0.97002 * 119.99191 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 7 2.1880 2.1063 1.0465
5 6 2.6350 3.2935 0.7251
6 6 2.9506 4.4123 1.6841
7 6 1.7407 5.3415 1.7998
8 6 4.1537 5.2034 1.1665
9 6 2.7612 3.3419 -0.6651
10 6 2.3628 2.0943 -1.1129
11 6 2.3143 1.6310 -2.5089
12 8 2.2383 0.4419 -2.7528
13 7 2.3541 2.5245 -3.5172
14 6 2.4432 3.9570 -3.2235
15 6 2.3083 2.0631 -4.9069
16 6 0.8525 1.9881 -5.3717
17 1 0.2842 1.3595 -4.6860
18 8 0.2902 3.3017 -5.3907
19 6 0.7964 1.3890 -6.7784
20 7 -0.5976 1.3166 -7.2231
21 6 -0.8962 0.8104 -8.4599
22 1 -0.1041 0.4649 -9.1078
23 6 -2.2170 0.7423 -8.8816
24 7 -3.1823 1.1638 -8.0923
25 14 -2.6245 0.0512 -10.5685
26 1 -1.3705 -0.3511 -11.2546
27 1 -3.5087 -1.1324 -10.4183
28 1 -3.3182 1.0882 -11.3739
29 1 -0.3633 0.5892 0.8420
30 1 -0.3634 0.4345 -0.9313
31 1 -0.3634 -1.0237 0.0894
32 1 1.8933 -0.5139 -0.8899
33 1 1.8933 -0.5139 0.8900
34 1 3.1840 3.9959 2.6640
35 1 1.5074 5.7580 0.8199
36 1 0.8837 4.7779 2.1686
37 1 1.9693 6.1510 2.4932
38 1 3.9204 5.6198 0.1866
39 1 4.3823 6.0123 1.8605
40 1 5.0157 4.5413 1.0841
41 1 3.0998 4.1749 -1.2632
42 1 3.4841 4.2275 -3.0465
43 1 2.0587 4.5260 -4.0700
44 1 1.8528 4.1832 -2.3355
45 1 2.8562 2.7613 -5.5398
46 1 2.7633 1.0752 -4.9770
47 1 0.7469 3.9165 -5.9811
48 1 1.3647 2.0175 -7.4639
49 1 1.2253 0.3870 -6.7639
50 1 -1.3091 1.6265 -6.6412
51 1 -4.1053 1.1158 -8.3868
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001725697990.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:16:57
Heat of formation + Delta-G solvation = 7.500377 kcal
Electronic energy + Delta-G solvation = -30326.499059 eV
Core-core repulsion = 26263.466271 eV
Total energy + Delta-G solvation = -4063.032788 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.80979 -39.83504 -37.52307 -36.42791 -35.42375 -34.03023 -33.78916 -31.81551
-31.06227 -29.45390 -29.19453 -27.44156 -27.10741 -25.73988 -24.25814 -23.33818
-22.79849 -21.65764 -21.20285 -20.44743 -18.92991 -17.38442 -17.16334 -16.87706
-16.43887 -16.18818 -15.69563 -15.37287 -15.02162 -14.87953 -14.61249 -14.44684
-14.36817 -13.97802 -13.70507 -13.45999 -13.42298 -13.11671 -12.96090 -12.68751
-12.54760 -12.43983 -12.29057 -12.20881 -11.94027 -11.72782 -11.59092 -11.45649
-11.41403 -11.35314 -10.94027 -10.83772 -10.72563 -10.58680 -10.19442 -10.09933
-9.82754 -9.69942 -9.23159 -9.02729 -8.89792 -8.60447 -6.91596 -5.74458
-3.03955 1.15195 2.14329 2.39698 2.88844 3.06260 3.43770 3.48847
3.51543 4.11710 4.20531 4.55121 4.57277 4.68981 4.71895 4.79096
4.89507 4.92920 4.99169 5.04242 5.09624 5.11326 5.16288 5.26288
5.29564 5.35623 5.37003 5.46743 5.55515 5.56467 5.59635 5.60300
5.64405 5.70417 5.74159 5.76124 5.91234 5.95669 5.99026 6.04537
6.20210 6.30650 6.38380 6.52991 6.61678 6.72426 7.11832 7.69598
7.87612 7.99185 8.01452 8.43669 9.55183 10.13011 10.48756 11.47989
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.017454 B = 0.002390 C = 0.002284
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1603.796987 B =11714.700608 C =12257.868768
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.106 3.894
3 N -0.253 5.253
4 N -0.276 5.276
5 C 0.027 3.973
6 C -0.009 4.009
7 C -0.142 4.142
8 C -0.143 4.143
9 C -0.195 4.195
10 C -0.029 4.029
11 C 0.587 3.413
12 O -0.538 6.538
13 N -0.588 5.588
14 C 0.066 3.934
15 C 0.088 3.912
16 C 0.087 3.913
17 H 0.100 0.900
18 O -0.550 6.550
19 C 0.127 3.873
20 N -0.725 5.725
21 C -0.242 4.242
22 H 0.070 0.930
23 C -0.014 4.014
24 N -0.929 5.929
25 Si 0.907 3.093
26 H -0.280 1.280
27 H -0.291 1.291
28 H -0.291 1.291
29 H 0.063 0.937
30 H 0.065 0.935
31 H 0.082 0.918
32 H 0.123 0.877
33 H 0.096 0.904
34 H 0.082 0.918
35 H 0.058 0.942
36 H 0.056 0.944
37 H 0.060 0.940
38 H 0.059 0.941
39 H 0.061 0.939
40 H 0.056 0.944
41 H 0.170 0.830
42 H 0.058 0.942
43 H 0.082 0.918
44 H 0.084 0.916
45 H 0.085 0.915
46 H 0.096 0.904
47 H 0.367 0.633
48 H 0.020 0.980
49 H 0.027 0.973
50 H 0.389 0.611
51 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.232 8.489 20.521 27.507
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C -0.013 4.013
3 N -0.040 5.040
4 N -0.108 5.108
5 C -0.129 4.129
6 C -0.029 4.029
7 C -0.200 4.200
8 C -0.201 4.201
9 C -0.224 4.224
10 C -0.158 4.158
11 C 0.374 3.626
12 O -0.415 6.415
13 N -0.319 5.319
14 C -0.076 4.076
15 C -0.035 4.035
16 C 0.026 3.974
17 H 0.118 0.882
18 O -0.354 6.354
19 C -0.002 4.002
20 N -0.370 5.370
21 C -0.373 4.373
22 H 0.088 0.912
23 C -0.210 4.210
24 N -0.578 5.578
25 Si 0.738 3.262
26 H -0.206 1.206
27 H -0.218 1.218
28 H -0.218 1.218
29 H 0.082 0.918
30 H 0.084 0.916
31 H 0.101 0.899
32 H 0.141 0.859
33 H 0.115 0.885
34 H 0.100 0.900
35 H 0.077 0.923
36 H 0.075 0.925
37 H 0.079 0.921
38 H 0.078 0.922
39 H 0.080 0.920
40 H 0.075 0.925
41 H 0.188 0.812
42 H 0.076 0.924
43 H 0.100 0.900
44 H 0.102 0.898
45 H 0.104 0.896
46 H 0.115 0.885
47 H 0.213 0.787
48 H 0.038 0.962
49 H 0.045 0.955
50 H 0.223 0.777
51 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 15.429 6.672 21.541 27.323
hybrid contribution 0.035 0.358 -1.882 1.916
sum 15.464 7.030 19.658 25.981
Atomic orbital electron populations
1.22112 0.93340 1.03654 1.03291 1.22303 0.96281 0.76485 1.06233
1.45771 1.44268 1.12244 1.01744 1.73080 1.19174 1.04763 1.13825
1.21948 1.03958 0.93348 0.93675 1.19401 0.95911 0.91062 0.96507
1.21819 0.97237 0.98781 1.02183 1.21825 0.97022 0.99723 1.01513
1.22612 1.07953 0.96917 0.94912 1.21315 1.10727 0.93924 0.89797
1.16973 0.76918 0.85575 0.83122 1.90781 1.50681 1.15696 1.84393
1.47344 1.71852 1.06949 1.05783 1.22412 1.01149 0.80264 1.03809
1.22328 0.98665 1.02347 0.80145 1.22544 0.92047 0.84770 0.98024
0.88242 1.86634 1.59600 1.21111 1.68031 1.21212 0.89571 0.97742
0.91680 1.42247 1.00963 1.75779 1.18032 1.19264 0.91899 1.33539
0.92582 0.91201 1.24770 0.95704 1.02021 0.98492 1.69699 0.99108
1.52679 1.36303 0.86113 0.77922 0.78278 0.83842 1.20566 1.21841
1.21847 0.91775 0.91591 0.89915 0.85927 0.88519 0.89979 0.92258
0.92535 0.92064 0.92165 0.91972 0.92458 0.81246 0.92352 0.89979
0.89764 0.89642 0.88537 0.78675 0.96208 0.95489 0.77672 0.93555
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.76 10.24 37.16 0.38 -1.38 16
2 C 0.11 1.18 6.80 -4.04 -0.03 1.16 16
3 N -0.25 -3.25 3.35 -57.14 -0.19 -3.44 16
4 N -0.28 -3.51 11.90 33.64 0.40 -3.11 16
5 C 0.03 0.29 6.12 -82.47 -0.51 -0.21 16
6 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16
7 C -0.14 -1.01 9.18 37.16 0.34 -0.67 16
8 C -0.14 -0.85 8.79 37.16 0.33 -0.53 16
9 C -0.20 -2.05 7.92 -38.98 -0.31 -2.36 16
10 C -0.03 -0.38 6.68 -82.06 -0.55 -0.92 16
11 C 0.59 8.31 7.62 -12.64 -0.10 8.21 16
12 O -0.54 -8.99 14.28 5.25 0.08 -8.91 16
13 N -0.59 -7.08 2.84 -182.94 -0.52 -7.60 16
14 C 0.07 0.57 8.50 59.85 0.51 1.08 16
15 C 0.09 1.11 5.03 -4.04 -0.02 1.09 16
16 C 0.09 1.42 3.30 -26.73 -0.09 1.33 16
17 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16
18 O -0.55 -8.91 12.04 -35.23 -0.42 -9.34 16
19 C 0.13 2.51 5.92 -4.04 -0.02 2.49 16
20 N -0.73 -18.86 5.49 -59.90 -0.33 -19.19 16
21 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16
22 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16
23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16
24 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16
25 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16
26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
27 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16
28 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16
29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16
30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16
31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
32 H 0.12 1.50 5.91 -51.93 -0.31 1.19 16
33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16
34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16
35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16
38 H 0.06 0.32 7.37 -51.93 -0.38 -0.06 16
39 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16
40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16
41 H 0.17 1.31 4.42 -52.49 -0.23 1.08 16
42 H 0.06 0.37 7.35 -51.93 -0.38 -0.01 16
43 H 0.08 0.64 7.26 -51.93 -0.38 0.26 16
44 H 0.08 0.74 5.36 -51.93 -0.28 0.46 16
45 H 0.09 0.83 8.07 -51.93 -0.42 0.42 16
46 H 0.10 1.30 7.42 -51.93 -0.39 0.92 16
47 H 0.37 4.62 9.04 45.56 0.41 5.03 16
48 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16
49 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
50 H 0.39 10.94 7.54 -40.82 -0.31 10.63 16
51 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16
LS Contribution 410.55 15.07 6.19 6.19
Total: -1.00 -35.56 410.55 -7.42 -42.98
By element:
Atomic # 1 Polarization: 19.21 SS G_CDS: -7.70 Total: 11.51 kcal
Atomic # 6 Polarization: 1.99 SS G_CDS: -0.62 Total: 1.37 kcal
Atomic # 7 Polarization: -61.55 SS G_CDS: 0.09 Total: -61.47 kcal
Atomic # 8 Polarization: -17.90 SS G_CDS: -0.35 Total: -18.25 kcal
Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal
Total LS contribution 6.19 Total: 6.19 kcal
Total: -35.56 -7.42 -42.98 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001725697990.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.478 kcal
(2) G-P(sol) polarization free energy of solvation -35.558 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.919 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.500 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds