Wall clock time and date at job start Tue Mar 31 2020 22:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47850 * 111.00115 * 2 1 4 4 C 1.55107 * 104.90447 * 146.23781 * 3 2 1 5 5 C 1.55141 * 101.56301 * 323.15924 * 4 3 2 6 6 H 1.09007 * 110.70439 * 276.96952 * 5 4 3 7 7 C 1.52999 * 110.71020 * 153.90745 * 5 4 3 8 8 C 1.50698 * 109.47004 * 177.40116 * 7 5 4 9 9 O 1.21283 * 120.00472 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99538 * 179.97438 * 8 7 5 11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 7 12 12 H 1.09002 * 112.85201 * 24.08188 * 11 10 8 13 13 C 1.53784 * 113.61491 * 155.28109 * 11 10 8 14 14 C 1.53783 * 87.08338 * 139.98310 * 13 11 10 15 15 H 1.08993 * 113.61667 * 89.11182 * 14 13 11 16 16 N 1.46903 * 113.61032 * 219.93579 * 14 13 11 17 17 C 1.46900 * 110.99596 * 204.99429 * 16 14 13 18 18 C 1.50699 * 109.46751 * 179.97438 * 17 16 14 19 19 O 1.21295 * 120.00142 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99822 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00129 * 179.97438 * 20 18 17 22 22 H 1.08006 * 119.99837 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00084 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00170 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99972 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47343 * 59.99768 * 25 23 21 27 27 H 1.48501 * 109.47421 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47161 * 300.00096 * 25 23 21 29 29 C 1.53780 * 87.07825 * 334.56565 * 14 13 11 30 30 C 1.47447 * 110.99844 * 120.84076 * 2 1 3 31 31 H 1.09002 * 109.46957 * 299.16509 * 1 2 3 32 32 H 1.09006 * 109.46633 * 59.15558 * 1 2 3 33 33 H 1.08993 * 109.46961 * 179.15812 * 1 2 3 34 34 H 1.08997 * 110.37161 * 265.19197 * 3 2 1 35 35 H 1.08999 * 110.37043 * 27.41917 * 3 2 1 36 36 H 1.09000 * 111.14896 * 205.04907 * 4 3 2 37 37 H 1.09004 * 110.92617 * 81.16867 * 4 3 2 38 38 H 1.09003 * 109.46690 * 57.40465 * 7 5 4 39 39 H 1.08993 * 109.46773 * 297.40801 * 7 5 4 40 40 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 41 41 H 1.09000 * 113.61044 * 254.52540 * 13 11 10 42 42 H 1.09001 * 113.61354 * 25.42535 * 13 11 10 43 43 H 1.00898 * 111.00185 * 328.95276 * 16 14 13 44 44 H 1.08994 * 109.47525 * 300.00268 * 17 16 14 45 45 H 1.09001 * 109.46604 * 60.00447 * 17 16 14 46 46 H 0.96996 * 120.00256 * 0.02562 * 20 18 17 47 47 H 0.97000 * 120.00338 * 179.97438 * 24 23 21 48 48 H 1.08998 * 113.61772 * 270.88604 * 29 14 13 49 49 H 1.09001 * 113.61751 * 139.98662 * 29 14 13 50 50 H 1.08997 * 109.88944 * 117.33423 * 30 2 1 51 51 H 1.09003 * 109.88585 * 356.14576 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3803 0.0000 4 6 3.3052 1.3061 0.8330 5 6 2.9159 0.2822 1.9315 6 1 2.3752 0.7725 2.7412 7 6 4.1569 -0.4338 2.4682 8 6 3.7551 -1.3737 3.5755 9 8 2.5907 -1.4625 3.9030 10 7 4.6897 -2.1163 4.2013 11 6 4.2999 -3.0255 5.2819 12 1 3.2563 -3.3338 5.2199 13 6 5.2770 -4.1956 5.4849 14 6 5.0756 -3.9986 6.9967 15 1 4.2439 -4.5727 7.4049 16 7 6.3100 -4.1474 7.7791 17 6 6.0119 -4.5384 9.1634 18 6 7.2995 -4.6818 9.9331 19 8 8.3610 -4.4778 9.3828 20 7 7.2715 -5.0367 11.2330 21 6 8.4429 -5.1676 11.9332 22 1 9.3881 -4.9860 11.4433 23 6 8.4141 -5.5330 13.2735 24 7 7.2640 -5.7525 13.8701 25 14 10.0101 -5.7107 14.2277 26 1 10.7356 -4.4150 14.2246 27 1 9.7089 -6.1066 15.6269 28 1 10.8547 -6.7524 13.5900 29 6 4.7179 -2.5371 6.6789 30 6 1.9974 -0.7057 1.1819 31 1 -0.3633 0.5008 0.8974 32 1 -0.3633 0.5269 -0.8824 33 1 -0.3633 -1.0275 -0.0151 34 1 2.2149 1.7038 -1.0182 35 1 1.2881 2.0596 0.4705 36 1 3.5482 2.2745 1.2704 37 1 4.1322 0.9342 0.2280 38 1 4.8624 0.3020 2.8542 39 1 4.6262 -0.9997 1.6635 40 1 5.6209 -2.0456 3.9392 41 1 4.8995 -5.1488 5.1148 42 1 6.2911 -3.9811 5.1478 43 1 6.9366 -4.8076 7.3437 44 1 5.3915 -3.7741 9.6313 45 1 5.4798 -5.4898 9.1655 46 1 6.4227 -5.2002 11.6730 47 1 7.2438 -6.0079 14.8056 48 1 5.5792 -1.8692 6.6682 49 1 3.8893 -2.1512 7.2726 50 1 2.5697 -1.5785 0.8676 51 1 1.1755 -1.0119 1.8291 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731490931.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:14 Heat of formation + Delta-G solvation = -77.900732 kcal Electronic energy + Delta-G solvation = -28243.178433 eV Core-core repulsion = 24176.442375 eV Total energy + Delta-G solvation = -4066.736058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.29339 -40.35401 -39.87693 -39.03942 -36.13051 -35.41560 -34.33913 -33.56274 -33.18341 -30.84463 -28.68950 -28.12662 -26.68596 -26.32603 -25.76728 -23.74384 -22.01308 -21.74174 -21.25866 -21.02130 -20.44486 -19.88688 -18.04148 -17.90366 -17.38074 -17.06316 -16.84918 -16.50954 -16.36398 -16.07801 -16.02028 -15.74923 -15.24873 -15.05147 -15.00624 -14.42100 -14.33998 -14.19193 -13.98590 -13.65320 -13.50260 -13.36853 -13.25908 -13.10425 -12.87065 -12.73384 -12.53792 -12.43808 -12.33380 -12.21115 -12.14938 -12.11047 -11.89111 -11.72485 -11.59211 -11.53272 -11.49266 -10.74690 -10.33383 -10.02060 -9.96845 -9.32708 -9.31912 -8.46582 -5.95729 1.40104 1.42048 1.53059 1.69162 2.05001 2.23418 2.30768 2.98917 3.08656 3.20757 3.48985 3.54403 3.59907 3.67091 3.71013 3.88019 3.96687 3.98410 4.08476 4.30708 4.35478 4.40140 4.45313 4.45879 4.50812 4.55432 4.57396 4.61779 4.69345 4.81079 4.83423 4.85770 4.86262 4.93911 4.97706 5.03407 5.09247 5.10996 5.15577 5.20938 5.37572 5.40559 5.62311 5.92425 5.98090 6.07955 6.14256 6.43355 6.59674 6.63816 7.12083 7.32874 7.55889 8.10789 8.70525 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.040097 B = 0.001398 C = 0.001384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.137964 B =20017.899737 C =20220.744471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.550 5.550 3 C 0.035 3.965 4 C -0.118 4.118 5 C -0.092 4.092 6 H 0.063 0.937 7 C -0.123 4.123 8 C 0.508 3.492 9 O -0.584 6.584 10 N -0.709 5.709 11 C 0.129 3.871 12 H 0.102 0.898 13 C -0.132 4.132 14 C 0.057 3.943 15 H 0.084 0.916 16 N -0.665 5.665 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.337 4.337 22 H 0.080 0.920 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.271 1.271 29 C -0.138 4.138 30 C 0.053 3.947 31 H 0.021 0.979 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.416 0.584 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.348 0.652 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.084 0.916 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 10.933 -27.133 31.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.274 5.274 3 C -0.092 4.092 4 C -0.155 4.155 5 C -0.112 4.112 6 H 0.081 0.919 7 C -0.163 4.163 8 C 0.296 3.704 9 O -0.464 6.464 10 N -0.360 5.360 11 C 0.023 3.977 12 H 0.120 0.880 13 C -0.170 4.170 14 C -0.053 4.053 15 H 0.102 0.898 16 N -0.298 5.298 17 C -0.069 4.069 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.177 4.177 30 C -0.074 4.074 31 H 0.040 0.960 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.253 0.747 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.168 0.832 44 H 0.116 0.884 45 H 0.085 0.915 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.193 11.341 -27.380 31.679 hybrid contribution -0.125 -0.804 1.785 1.962 sum -11.318 10.538 -25.594 29.904 Atomic orbital electron populations 1.22548 0.87423 1.02139 1.00781 1.63626 1.08485 1.15295 1.39981 1.23185 0.96036 0.88725 1.01250 1.22825 0.97647 0.99303 0.95760 1.22082 0.95427 0.96153 0.97496 0.91872 1.21723 0.99284 0.98460 0.96863 1.21321 0.85243 0.80721 0.83111 1.90685 1.20375 1.68083 1.67248 1.45940 1.11523 1.42291 1.36256 1.22139 0.99317 0.90391 0.85834 0.87956 1.23521 1.00670 0.98789 0.94030 1.22924 0.91757 0.97546 0.93102 0.89838 1.60185 1.14329 1.54702 1.00570 1.21591 0.93625 1.01166 0.90478 1.20876 0.91754 0.82082 0.82780 1.90482 1.33865 1.56663 1.69891 1.41942 1.09120 1.60771 1.09212 1.19658 0.87446 1.45930 0.93569 0.90208 1.26044 1.01836 0.96156 0.97162 1.69666 1.26326 1.46942 1.13198 0.84983 0.77349 0.78842 0.77133 1.19736 1.19532 1.19579 1.23543 1.00985 0.97022 0.96183 1.22794 0.97957 0.97155 0.89535 0.95988 0.90251 0.91639 0.89188 0.93734 0.89193 0.89106 0.86234 0.86277 0.74743 0.89402 0.88013 0.83227 0.88397 0.91467 0.77028 0.91300 0.89693 0.92210 0.91143 0.94234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.12 127.69 1.16 1.44 16 2 N -0.55 -8.74 5.45 -911.24 -4.96 -13.70 16 3 C 0.04 0.42 6.73 86.84 0.58 1.00 16 4 C -0.12 -1.08 6.54 32.05 0.21 -0.87 16 5 C -0.09 -1.25 2.52 -9.61 -0.02 -1.27 16 6 H 0.06 1.13 7.97 -2.38 -0.02 1.11 16 7 C -0.12 -1.26 5.10 29.85 0.15 -1.11 16 8 C 0.51 8.95 7.64 87.66 0.67 9.62 16 9 O -0.58 -15.42 14.59 -3.04 -0.04 -15.47 16 10 N -0.71 -10.43 5.35 -440.03 -2.36 -12.79 16 11 C 0.13 2.33 4.24 45.52 0.19 2.52 16 12 H 0.10 2.14 7.47 -2.39 -0.02 2.12 16 13 C -0.13 -2.15 7.40 31.12 0.23 -1.92 16 14 C 0.06 1.25 4.14 45.44 0.19 1.43 16 15 H 0.08 1.71 7.87 -2.39 -0.02 1.70 16 16 N -0.67 -19.86 6.19 -492.86 -3.05 -22.91 16 17 C 0.06 2.17 6.01 85.56 0.51 2.68 16 18 C 0.44 20.71 7.82 87.66 0.69 21.40 16 19 O -0.62 -34.12 15.78 -3.08 -0.05 -34.17 16 20 N -0.57 -29.47 5.29 -306.98 -1.62 -31.09 16 21 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -49.75 13.05 21.66 0.28 -49.46 16 25 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 29 C -0.14 -2.98 7.68 31.12 0.24 -2.74 16 30 C 0.05 0.92 5.61 86.65 0.49 1.41 16 31 H 0.02 0.33 8.10 -2.39 -0.02 0.31 16 32 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.04 0.53 7.78 -2.39 -0.02 0.51 16 36 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 0.64 8.05 -2.39 -0.02 0.62 16 38 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.12 0.74 8.00 -2.39 -0.02 0.72 16 40 H 0.42 3.89 8.73 -92.71 -0.81 3.08 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.10 1.57 8.12 -2.39 -0.02 1.55 16 43 H 0.35 10.66 8.24 -89.70 -0.74 9.92 16 44 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.07 1.99 8.13 -2.39 -0.02 1.97 16 46 H 0.40 19.38 7.90 -92.71 -0.73 18.64 16 47 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 48 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.07 1.22 7.73 -2.39 -0.02 1.20 16 51 H 0.04 0.87 7.21 -2.39 -0.02 0.85 16 Total: -1.00 -73.06 412.33 -4.53 -77.59 By element: Atomic # 1 Polarization: 43.43 SS G_CDS: -1.33 Total: 42.10 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: 6.57 Total: 15.09 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -11.71 Total: -129.95 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -0.09 Total: -49.64 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -73.06 -4.53 -77.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731490931.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.309 kcal (2) G-P(sol) polarization free energy of solvation -73.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds