Wall clock time and date at job start Tue Mar 31 2020 22:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 119.99641 * 2 1 4 4 C 1.53004 * 109.46959 * 90.00272 * 3 2 1 5 5 N 1.46904 * 109.46693 * 179.97438 * 4 3 2 6 6 C 1.46904 * 110.99635 * 169.99998 * 5 4 3 7 7 C 1.53236 * 109.33651 * 187.25598 * 6 5 4 8 8 N 1.47087 * 108.52147 * 306.16486 * 7 6 5 9 9 C 1.36936 * 120.88407 * 231.16845 * 8 7 6 10 10 H 1.07998 * 119.99598 * 26.59334 * 9 8 7 11 11 C 1.38806 * 120.00158 * 206.59999 * 9 8 7 12 12 N 1.31619 * 119.99954 * 17.00294 * 11 9 8 13 13 Si 1.86797 * 119.99983 * 197.00554 * 11 9 8 14 14 H 1.48506 * 109.47332 * 90.00045 * 13 11 9 15 15 H 1.48505 * 109.47110 * 209.99412 * 13 11 9 16 16 H 1.48496 * 109.47418 * 329.99768 * 13 11 9 17 17 C 1.47077 * 118.23286 * 51.18596 * 8 7 6 18 18 C 1.46897 * 110.99877 * 294.29490 * 5 4 3 19 19 C 1.34773 * 120.00359 * 179.97438 * 2 1 3 20 20 O 1.21273 * 120.00415 * 180.02562 * 19 2 1 21 21 C 1.50701 * 119.99714 * 0.02562 * 19 2 1 22 22 H 1.09005 * 110.86056 * 303.79024 * 21 19 2 23 23 C 1.54630 * 110.97095 * 67.62325 * 21 19 2 24 24 C 1.51275 * 104.19986 * 93.31953 * 23 21 19 25 25 O 1.21277 * 124.94373 * 196.21906 * 24 23 21 26 26 N 1.34422 * 110.11446 * 16.25338 * 24 23 21 27 27 C 1.46503 * 124.35047 * 180.39022 * 26 24 23 28 28 C 1.46761 * 111.29989 * 0.40594 * 26 24 23 29 29 H 1.09002 * 109.47335 * 90.00191 * 1 2 3 30 30 H 1.09008 * 109.46928 * 210.00146 * 1 2 3 31 31 H 1.09003 * 109.47423 * 330.00103 * 1 2 3 32 32 H 1.08999 * 109.47316 * 329.99762 * 3 2 1 33 33 H 1.08998 * 109.46846 * 209.99854 * 3 2 1 34 34 H 1.08999 * 109.47523 * 59.99616 * 4 3 2 35 35 H 1.08998 * 109.47000 * 299.99488 * 4 3 2 36 36 H 1.08999 * 109.49146 * 307.20818 * 6 5 4 37 37 H 1.08999 * 109.49556 * 67.29168 * 6 5 4 38 38 H 1.09002 * 109.63635 * 65.87771 * 7 6 5 39 39 H 1.09003 * 109.63051 * 186.46149 * 7 6 5 40 40 H 0.97006 * 120.00085 * 180.02562 * 12 11 9 41 41 H 1.09007 * 109.62606 * 189.10520 * 17 8 7 42 42 H 1.08995 * 109.62857 * 68.52944 * 17 8 7 43 43 H 1.08987 * 109.49969 * 292.70962 * 18 5 4 44 44 H 1.09003 * 109.49014 * 52.76581 * 18 5 4 45 45 H 1.09003 * 110.48445 * 212.00400 * 23 21 19 46 46 H 1.08999 * 110.48612 * 334.63782 * 23 21 19 47 47 H 1.08996 * 109.46563 * 270.02392 * 27 26 24 48 48 H 1.08997 * 109.46879 * 30.02303 * 27 26 24 49 49 H 1.08994 * 109.47217 * 150.02060 * 27 26 24 50 50 H 1.09004 * 110.24491 * 223.98237 * 28 26 24 51 51 H 1.09007 * 110.31857 * 102.02257 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 1.4425 5 7 3.1874 2.9824 1.4425 6 6 3.2444 3.5574 2.7931 7 6 3.8557 4.9608 2.7217 8 7 5.1499 4.8720 2.0284 9 6 6.2806 5.4142 2.5785 10 1 6.3613 5.5226 3.6500 11 6 7.3230 5.8246 1.7589 12 7 7.1149 6.0106 0.4727 13 14 9.0213 6.1129 2.4815 14 1 9.8036 4.8518 2.4258 15 1 9.7203 7.1639 1.6991 16 1 8.8903 6.5521 3.8940 17 6 5.1972 4.1856 0.7285 18 6 4.5331 2.8127 0.8783 19 6 2.1389 -1.1671 0.0005 20 8 3.3516 -1.1671 0.0010 21 6 1.3854 -2.4722 0.0005 22 1 0.7004 -2.5250 0.8468 23 6 0.6332 -2.6770 -1.3349 24 6 1.5957 -3.4776 -2.1840 25 8 1.5146 -3.6122 -3.3865 26 7 2.5535 -4.0188 -1.4116 27 6 3.6511 -4.8482 -1.9152 28 6 2.3583 -3.6722 0.0011 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6083 2.0284 -0.5139 33 1 3.1498 1.1385 -0.5138 34 1 3.0415 0.9508 1.9564 35 1 1.5000 1.8407 1.9564 36 1 2.2370 3.6201 3.2046 37 1 3.8601 2.9245 3.4322 38 1 3.1891 5.6230 2.1692 39 1 4.0063 5.3464 3.7300 40 1 7.8435 6.2971 -0.1001 41 1 6.2347 4.0587 0.4190 42 1 4.6595 4.7732 -0.0156 43 1 5.1308 2.1903 1.5440 44 1 4.4603 2.3349 -0.0987 45 1 -0.2880 -3.2364 -1.1719 46 1 0.4193 -1.7163 -1.8034 47 1 3.3459 -5.8946 -1.9137 48 1 3.8998 -4.5436 -2.9318 49 1 4.5242 -4.7235 -1.2747 50 1 3.3079 -3.3878 0.4545 51 1 1.9203 -4.5126 0.5399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732063690.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:58 Heat of formation + Delta-G solvation = -18.226352 kcal Electronic energy + Delta-G solvation = -30392.043533 eV Core-core repulsion = 26327.895150 eV Total energy + Delta-G solvation = -4064.148383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.33037 -39.57143 -38.11495 -36.61794 -35.94678 -34.43121 -33.30383 -31.52121 -29.90249 -29.42161 -28.15026 -27.21877 -27.04690 -25.84190 -23.86076 -22.84403 -22.47835 -21.29417 -19.98534 -19.36881 -19.07667 -17.85388 -17.06674 -16.88770 -16.47804 -16.04682 -15.81913 -15.36178 -14.98750 -14.62870 -14.39812 -14.11156 -13.96328 -13.82180 -13.75305 -13.49458 -13.44091 -13.35700 -13.00289 -12.87246 -12.78699 -12.62574 -12.54049 -12.33985 -12.10702 -11.89896 -11.80536 -11.40167 -11.04523 -10.95340 -10.72636 -10.40800 -10.26750 -10.17054 -10.02602 -10.02103 -9.72306 -9.59532 -9.06680 -8.90547 -8.47789 -7.83289 -6.64358 -5.75236 -3.16566 2.23372 2.30537 2.61831 2.71788 3.40134 3.46749 3.47904 3.79607 3.87922 4.01733 4.35563 4.45311 4.53461 4.64672 4.85332 4.90278 4.93614 5.01919 5.02529 5.13851 5.15819 5.21013 5.31628 5.33476 5.40563 5.41955 5.44836 5.45655 5.58602 5.81742 5.94360 5.96359 5.98672 6.11906 6.14635 6.24047 6.35180 6.39997 6.56837 6.72202 6.74289 6.93731 7.08998 7.27681 7.59578 7.67003 7.72671 7.82357 7.84285 7.89485 8.46341 9.24002 9.87475 10.45882 11.33516 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.002364 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.244903 B =11843.101997 C =12750.521782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.612 5.612 3 C 0.117 3.883 4 C 0.044 3.956 5 N -0.531 5.531 6 C 0.046 3.954 7 C 0.149 3.851 8 N -0.596 5.596 9 C -0.252 4.252 10 H 0.066 0.934 11 C 0.001 3.999 12 N -0.903 5.903 13 Si 0.903 3.097 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.280 1.280 17 C 0.179 3.821 18 C 0.034 3.966 19 C 0.517 3.483 20 O -0.523 6.523 21 C -0.125 4.125 22 H 0.125 0.875 23 C -0.146 4.146 24 C 0.516 3.484 25 O -0.531 6.531 26 N -0.617 5.617 27 C 0.097 3.903 28 C 0.116 3.884 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.029 0.971 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.055 0.945 40 H 0.254 0.746 41 H 0.088 0.912 42 H 0.026 0.974 43 H 0.025 0.975 44 H 0.062 0.938 45 H 0.117 0.883 46 H 0.108 0.892 47 H 0.056 0.944 48 H 0.075 0.925 49 H 0.075 0.925 50 H 0.098 0.902 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.384 -20.494 0.398 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.345 5.345 3 C -0.006 4.006 4 C -0.086 4.086 5 N -0.256 5.256 6 C -0.083 4.083 7 C 0.023 3.977 8 N -0.319 5.319 9 C -0.381 4.381 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.547 5.547 13 Si 0.733 3.267 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.205 1.205 17 C 0.052 3.948 18 C -0.095 4.095 19 C 0.303 3.697 20 O -0.399 6.399 21 C -0.147 4.147 22 H 0.143 0.857 23 C -0.186 4.186 24 C 0.303 3.697 25 O -0.408 6.408 26 N -0.352 5.352 27 C -0.044 4.044 28 C -0.008 4.008 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.135 0.865 46 H 0.127 0.873 47 H 0.075 0.925 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.116 0.884 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.812 -20.191 -0.681 26.283 hybrid contribution 1.214 -0.403 0.985 1.615 sum -15.598 -20.594 0.304 25.836 Atomic orbital electron populations 1.21939 0.79358 1.03561 1.02123 1.47811 1.07134 1.06206 1.73373 1.21568 0.98142 0.83220 0.97622 1.22344 0.98381 0.91683 0.96161 1.61937 1.17963 1.23064 1.22636 1.22607 0.98979 0.98494 0.88227 1.20972 0.88185 0.92195 0.96393 1.44127 1.03176 1.63783 1.20818 1.19196 0.93133 1.34724 0.91084 0.91661 1.25023 0.99468 0.99283 0.95990 1.70031 1.30979 1.49612 1.04122 0.86283 0.84652 0.77472 0.78321 1.21501 1.21739 1.20497 1.20865 0.99870 0.86934 0.87081 1.22951 0.87617 1.01150 0.97780 1.20230 0.87950 0.84991 0.76498 1.90756 1.13624 1.86892 1.48591 1.22333 0.98571 0.93536 1.00272 0.85671 1.22417 0.99054 1.02965 0.94212 1.20764 0.82173 0.79416 0.87315 1.90738 1.74699 1.62041 1.13324 1.48080 1.27520 1.51308 1.08261 1.21556 0.88451 0.93698 1.00742 1.22034 1.01099 0.95247 0.82395 0.92142 0.90960 0.90376 0.89443 0.89409 0.95226 0.91559 0.92157 0.95495 0.95653 0.92642 0.93622 0.89389 0.95580 0.95639 0.91952 0.86510 0.87333 0.92521 0.90650 0.90673 0.88354 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 9.18 59.85 0.55 0.94 16 2 N -0.61 -5.98 2.87 -181.57 -0.52 -6.50 16 3 C 0.12 1.48 5.34 -4.04 -0.02 1.46 16 4 C 0.04 0.62 5.29 -3.82 -0.02 0.60 16 5 N -0.53 -9.46 4.63 -234.32 -1.08 -10.54 16 6 C 0.05 0.84 5.62 -3.70 -0.02 0.82 16 7 C 0.15 3.20 6.69 -3.60 -0.02 3.18 16 8 N -0.60 -15.40 3.04 -172.01 -0.52 -15.92 16 9 C -0.25 -7.06 9.63 -15.06 -0.15 -7.20 16 10 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 11 C 0.00 0.02 4.94 -17.43 -0.09 -0.06 16 12 N -0.90 -26.68 11.15 55.49 0.62 -26.06 16 13 Si 0.90 22.08 29.59 -169.99 -5.03 17.05 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.18 4.43 5.42 -3.60 -0.02 4.41 16 18 C 0.03 0.70 5.46 -3.70 -0.02 0.68 16 19 C 0.52 5.64 7.00 -10.99 -0.08 5.57 16 20 O -0.52 -8.09 15.11 5.56 0.08 -8.01 16 21 C -0.13 -0.82 2.55 -90.14 -0.23 -1.05 16 22 H 0.13 0.39 7.25 -51.93 -0.38 0.01 16 23 C -0.15 -0.98 5.78 -26.74 -0.15 -1.14 16 24 C 0.52 5.75 8.02 -10.86 -0.09 5.66 16 25 O -0.53 -8.09 17.60 5.56 0.10 -7.99 16 26 N -0.62 -5.88 3.33 -180.29 -0.60 -6.48 16 27 C 0.10 0.79 10.96 59.85 0.66 1.45 16 28 C 0.12 0.82 6.68 -3.12 -0.02 0.80 16 29 H 0.06 0.27 7.27 -51.93 -0.38 -0.10 16 30 H 0.07 0.21 6.28 -51.92 -0.33 -0.12 16 31 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 32 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 33 H 0.09 1.36 5.68 -51.93 -0.29 1.07 16 34 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.07 0.81 7.97 -51.93 -0.41 0.40 16 36 H 0.06 0.91 7.99 -51.93 -0.41 0.50 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 1.14 7.95 -51.93 -0.41 0.73 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.09 2.43 6.12 -51.93 -0.32 2.11 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.03 0.56 8.14 -51.94 -0.42 0.14 16 44 H 0.06 1.19 6.16 -51.93 -0.32 0.87 16 45 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.11 0.76 6.21 -51.93 -0.32 0.43 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.72 7.93 -51.93 -0.41 0.30 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.10 0.86 7.02 -51.93 -0.36 0.50 16 51 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -36.58 396.60 -9.25 -45.82 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -8.54 Total: -3.47 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 0.28 Total: 16.11 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -2.11 Total: -65.50 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.18 Total: -16.00 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.58 -9.25 -45.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732063690.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.598 kcal (2) G-P(sol) polarization free energy of solvation -36.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds