Wall clock time and date at job start Tue Mar 31 2020 22:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46502 * 119.99641 * 2 1 4 4 C 1.53004 * 109.46959 * 90.00272 * 3 2 1 5 5 N 1.46904 * 109.46693 * 179.97438 * 4 3 2 6 6 C 1.46904 * 110.99635 * 169.99998 * 5 4 3 7 7 C 1.53236 * 109.33651 * 187.25598 * 6 5 4 8 8 N 1.47087 * 108.52147 * 306.16486 * 7 6 5 9 9 C 1.36936 * 120.88407 * 231.16845 * 8 7 6 10 10 H 1.07998 * 119.99598 * 26.59334 * 9 8 7 11 11 C 1.38806 * 120.00158 * 206.59999 * 9 8 7 12 12 N 1.31619 * 119.99954 * 17.00294 * 11 9 8 13 13 Si 1.86797 * 119.99983 * 197.00554 * 11 9 8 14 14 H 1.48506 * 109.47332 * 90.00045 * 13 11 9 15 15 H 1.48505 * 109.47110 * 209.99412 * 13 11 9 16 16 H 1.48496 * 109.47418 * 329.99768 * 13 11 9 17 17 C 1.47077 * 118.23286 * 51.18596 * 8 7 6 18 18 C 1.46897 * 110.99877 * 294.29490 * 5 4 3 19 19 C 1.34773 * 120.00359 * 179.97438 * 2 1 3 20 20 O 1.21273 * 120.00415 * 180.02562 * 19 2 1 21 21 C 1.50701 * 119.99714 * 0.02562 * 19 2 1 22 22 H 1.09005 * 110.86056 * 303.79024 * 21 19 2 23 23 C 1.54630 * 110.97095 * 67.62325 * 21 19 2 24 24 C 1.51275 * 104.19986 * 93.31953 * 23 21 19 25 25 O 1.21277 * 124.94373 * 196.21906 * 24 23 21 26 26 N 1.34422 * 110.11446 * 16.25338 * 24 23 21 27 27 C 1.46503 * 124.35047 * 180.39022 * 26 24 23 28 28 C 1.46761 * 111.29989 * 0.40594 * 26 24 23 29 29 H 1.09002 * 109.47335 * 90.00191 * 1 2 3 30 30 H 1.09008 * 109.46928 * 210.00146 * 1 2 3 31 31 H 1.09003 * 109.47423 * 330.00103 * 1 2 3 32 32 H 1.08999 * 109.47316 * 329.99762 * 3 2 1 33 33 H 1.08998 * 109.46846 * 209.99854 * 3 2 1 34 34 H 1.08999 * 109.47523 * 59.99616 * 4 3 2 35 35 H 1.08998 * 109.47000 * 299.99488 * 4 3 2 36 36 H 1.08999 * 109.49146 * 307.20818 * 6 5 4 37 37 H 1.08999 * 109.49556 * 67.29168 * 6 5 4 38 38 H 1.09002 * 109.63635 * 65.87771 * 7 6 5 39 39 H 1.09003 * 109.63051 * 186.46149 * 7 6 5 40 40 H 0.97006 * 120.00085 * 180.02562 * 12 11 9 41 41 H 1.09007 * 109.62606 * 189.10520 * 17 8 7 42 42 H 1.08995 * 109.62857 * 68.52944 * 17 8 7 43 43 H 1.08987 * 109.49969 * 292.70962 * 18 5 4 44 44 H 1.09003 * 109.49014 * 52.76581 * 18 5 4 45 45 H 1.09003 * 110.48445 * 212.00400 * 23 21 19 46 46 H 1.08999 * 110.48612 * 334.63782 * 23 21 19 47 47 H 1.08996 * 109.46563 * 270.02392 * 27 26 24 48 48 H 1.08997 * 109.46879 * 30.02303 * 27 26 24 49 49 H 1.08994 * 109.47217 * 150.02060 * 27 26 24 50 50 H 1.09004 * 110.24491 * 223.98237 * 28 26 24 51 51 H 1.09007 * 110.31857 * 102.02257 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 1.4425 5 7 3.1874 2.9824 1.4425 6 6 3.2444 3.5574 2.7931 7 6 3.8557 4.9608 2.7217 8 7 5.1499 4.8720 2.0284 9 6 6.2806 5.4142 2.5785 10 1 6.3613 5.5226 3.6500 11 6 7.3230 5.8246 1.7589 12 7 7.1149 6.0106 0.4727 13 14 9.0213 6.1129 2.4815 14 1 9.8036 4.8518 2.4258 15 1 9.7203 7.1639 1.6991 16 1 8.8903 6.5521 3.8940 17 6 5.1972 4.1856 0.7285 18 6 4.5331 2.8127 0.8783 19 6 2.1389 -1.1671 0.0005 20 8 3.3516 -1.1671 0.0010 21 6 1.3854 -2.4722 0.0005 22 1 0.7004 -2.5250 0.8468 23 6 0.6332 -2.6770 -1.3349 24 6 1.5957 -3.4776 -2.1840 25 8 1.5146 -3.6122 -3.3865 26 7 2.5535 -4.0188 -1.4116 27 6 3.6511 -4.8482 -1.9152 28 6 2.3583 -3.6722 0.0011 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6083 2.0284 -0.5139 33 1 3.1498 1.1385 -0.5138 34 1 3.0415 0.9508 1.9564 35 1 1.5000 1.8407 1.9564 36 1 2.2370 3.6201 3.2046 37 1 3.8601 2.9245 3.4322 38 1 3.1891 5.6230 2.1692 39 1 4.0063 5.3464 3.7300 40 1 7.8435 6.2971 -0.1001 41 1 6.2347 4.0587 0.4190 42 1 4.6595 4.7732 -0.0156 43 1 5.1308 2.1903 1.5440 44 1 4.4603 2.3349 -0.0987 45 1 -0.2880 -3.2364 -1.1719 46 1 0.4193 -1.7163 -1.8034 47 1 3.3459 -5.8946 -1.9137 48 1 3.8998 -4.5436 -2.9318 49 1 4.5242 -4.7235 -1.2747 50 1 3.3079 -3.3878 0.4545 51 1 1.9203 -4.5126 0.5399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732063690.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:57 Heat of formation + Delta-G solvation = -45.744086 kcal Electronic energy + Delta-G solvation = -30393.236792 eV Core-core repulsion = 26327.895150 eV Total energy + Delta-G solvation = -4065.341641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.04931 -40.46605 -39.63732 -37.50305 -36.95945 -36.00843 -34.09924 -33.29735 -31.68916 -30.70883 -28.78808 -28.23134 -27.76742 -27.08673 -25.27812 -24.33784 -23.89612 -22.44816 -20.86652 -20.72704 -20.11547 -18.77694 -18.53120 -17.79187 -17.53265 -16.90011 -16.80767 -16.63133 -16.18508 -15.97851 -15.89266 -15.39175 -15.22926 -15.13342 -14.98659 -14.63867 -14.56482 -14.32929 -14.10204 -13.98073 -13.54489 -13.36987 -13.26219 -13.23154 -13.16251 -12.98470 -12.91686 -12.68407 -12.65075 -12.48803 -12.34698 -12.14732 -12.02734 -11.83914 -11.56712 -11.43070 -11.00386 -10.83504 -10.61606 -9.78047 -9.73853 -9.33477 -8.71566 -7.89869 -5.34691 1.43877 1.45595 1.46062 1.53692 1.54697 1.88413 2.07293 2.48574 3.01839 3.21483 3.25578 3.31949 3.47847 3.65176 3.83502 3.94568 4.11621 4.22861 4.28277 4.28555 4.31715 4.43437 4.45581 4.48649 4.51275 4.61599 4.62211 4.67491 4.68311 4.73464 4.75498 4.77764 4.79152 4.85072 4.86446 5.00852 5.01304 5.07968 5.18813 5.34740 5.45233 5.47247 5.58730 5.63587 6.05386 6.10037 6.20935 6.34782 6.37492 7.05262 7.10399 7.12122 7.81514 8.35650 9.17067 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017067 B = 0.002364 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.244903 B =11843.101997 C =12750.521782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.608 5.608 3 C 0.122 3.878 4 C 0.055 3.945 5 N -0.534 5.534 6 C 0.056 3.944 7 C 0.144 3.856 8 N -0.616 5.616 9 C -0.264 4.264 10 H 0.069 0.931 11 C -0.054 4.054 12 N -0.936 5.936 13 Si 0.969 3.031 14 H -0.288 1.288 15 H -0.293 1.293 16 H -0.266 1.266 17 C 0.188 3.812 18 C 0.055 3.945 19 C 0.505 3.495 20 O -0.582 6.582 21 C -0.110 4.110 22 H 0.177 0.823 23 C -0.133 4.133 24 C 0.497 3.503 25 O -0.588 6.588 26 N -0.623 5.623 27 C 0.091 3.909 28 C 0.111 3.889 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.012 0.988 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.017 0.983 38 H 0.022 0.978 39 H 0.063 0.937 40 H 0.250 0.750 41 H 0.052 0.948 42 H 0.002 0.998 43 H 0.007 0.993 44 H 0.071 0.929 45 H 0.160 0.840 46 H 0.108 0.892 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.084 0.916 50 H 0.078 0.922 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.613 -21.942 2.773 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.341 5.341 3 C -0.001 4.001 4 C -0.074 4.074 5 N -0.259 5.259 6 C -0.073 4.073 7 C 0.018 3.982 8 N -0.340 5.340 9 C -0.394 4.394 10 H 0.087 0.913 11 C -0.249 4.249 12 N -0.582 5.582 13 Si 0.797 3.203 14 H -0.215 1.215 15 H -0.220 1.220 16 H -0.190 1.190 17 C 0.062 3.938 18 C -0.074 4.074 19 C 0.294 3.706 20 O -0.462 6.462 21 C -0.131 4.131 22 H 0.195 0.805 23 C -0.173 4.173 24 C 0.286 3.714 25 O -0.469 6.469 26 N -0.356 5.356 27 C -0.050 4.050 28 C -0.011 4.011 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.035 0.965 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.020 0.980 43 H 0.025 0.975 44 H 0.089 0.911 45 H 0.178 0.822 46 H 0.126 0.874 47 H 0.095 0.905 48 H 0.071 0.929 49 H 0.102 0.898 50 H 0.096 0.904 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.106 -21.649 1.755 29.598 hybrid contribution 2.180 0.054 0.259 2.196 sum -17.926 -21.595 2.014 28.138 Atomic orbital electron populations 1.22319 0.76070 1.05836 1.03601 1.47911 1.08999 1.04732 1.72409 1.21301 0.97288 0.85190 0.96353 1.22356 0.98697 0.89063 0.97281 1.61881 1.16003 1.25417 1.22596 1.22494 1.00804 0.95800 0.88168 1.21164 0.86321 0.94605 0.96093 1.44414 1.04493 1.63992 1.21095 1.19549 0.94277 1.34126 0.91431 0.91304 1.25826 1.03014 0.99689 0.96389 1.70191 1.31699 1.50915 1.05391 0.85240 0.79970 0.76985 0.78111 1.21525 1.21968 1.19008 1.20569 0.97872 0.88818 0.86534 1.22531 0.88920 0.97793 0.98201 1.21137 0.87623 0.86637 0.75230 1.90741 1.16398 1.87808 1.51207 1.22432 0.98437 0.90255 1.02015 0.80544 1.22474 0.99312 1.02620 0.92869 1.21659 0.83125 0.79516 0.87116 1.90699 1.76287 1.64171 1.15737 1.48365 1.27102 1.50658 1.09469 1.21630 0.88985 0.94699 0.99723 1.22273 1.00840 0.97008 0.80993 0.91085 0.87422 0.89461 0.88272 0.93171 0.96947 0.88138 0.87824 0.96461 0.96019 0.91895 0.94098 0.92990 0.97951 0.97497 0.91117 0.82211 0.87420 0.90547 0.92901 0.89774 0.90390 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 9.18 127.77 1.17 1.55 16 2 N -0.61 -10.30 2.87 -846.75 -2.43 -12.72 16 3 C 0.12 2.95 5.34 86.38 0.46 3.41 16 4 C 0.05 1.44 5.29 86.30 0.46 1.89 16 5 N -0.53 -18.43 4.63 -895.26 -4.15 -22.58 16 6 C 0.06 1.92 5.62 86.38 0.49 2.41 16 7 C 0.14 6.07 6.69 86.35 0.58 6.65 16 8 N -0.62 -32.51 3.04 -698.12 -2.12 -34.63 16 9 C -0.26 -15.04 9.63 84.03 0.81 -14.23 16 10 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 11 C -0.05 -3.12 4.94 84.86 0.42 -2.70 16 12 N -0.94 -57.40 11.15 21.65 0.24 -57.16 16 13 Si 0.97 46.30 29.59 68.60 2.03 48.32 16 14 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 15 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 17 C 0.19 9.77 5.42 86.35 0.47 10.24 16 18 C 0.06 2.33 5.46 86.38 0.47 2.80 16 19 C 0.50 10.12 7.00 87.66 0.61 10.73 16 20 O -0.58 -18.32 15.11 -3.01 -0.05 -18.37 16 21 C -0.11 -1.01 2.55 -10.48 -0.03 -1.04 16 22 H 0.18 -0.14 7.25 -2.38 -0.02 -0.16 16 23 C -0.13 -1.31 5.78 30.59 0.18 -1.13 16 24 C 0.50 10.64 8.02 87.90 0.71 11.34 16 25 O -0.59 -18.37 17.60 -3.02 -0.05 -18.42 16 26 N -0.62 -11.32 3.33 -842.91 -2.81 -14.13 16 27 C 0.09 1.52 10.96 127.77 1.40 2.92 16 28 C 0.11 1.30 6.68 86.83 0.58 1.87 16 29 H 0.07 0.33 7.27 -2.39 -0.02 0.31 16 30 H 0.11 -0.10 6.28 -2.38 -0.01 -0.11 16 31 H 0.09 0.42 8.07 -2.39 -0.02 0.40 16 32 H 0.10 2.15 8.07 -2.39 -0.02 2.13 16 33 H 0.05 1.60 5.68 -2.39 -0.01 1.59 16 34 H 0.01 0.37 8.12 -2.39 -0.02 0.35 16 35 H 0.10 1.99 7.97 -2.39 -0.02 1.98 16 36 H 0.10 2.68 7.99 -2.39 -0.02 2.66 16 37 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 2.52 7.95 -2.39 -0.02 2.50 16 40 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 41 H 0.05 3.04 6.12 -2.38 -0.01 3.03 16 42 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.07 2.85 6.16 -2.39 -0.01 2.83 16 45 H 0.16 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.11 1.15 6.21 -2.39 -0.01 1.13 16 47 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.05 1.10 7.93 -2.39 -0.02 1.08 16 49 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.08 1.29 7.02 -2.39 -0.02 1.28 16 51 H 0.12 0.48 8.14 -2.38 -0.02 0.46 16 Total: -1.00 -87.29 396.60 0.35 -86.94 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 0.91 Total: 6.03 kcal Atomic # 6 Polarization: 27.93 SS G_CDS: 8.77 Total: 36.70 kcal Atomic # 7 Polarization: -129.95 SS G_CDS: -11.26 Total: -141.21 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.10 Total: -36.79 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -87.29 0.35 -86.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732063690.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.197 kcal (2) G-P(sol) polarization free energy of solvation -87.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds