Wall clock time and date at job start Tue Mar 31 2020 21:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47082 * 2 1 4 4 C 1.34773 * 120.00449 * 269.99718 * 3 2 1 5 5 O 1.21278 * 120.00468 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99831 * 0.02562 * 4 3 2 7 7 N 1.46901 * 109.47316 * 179.97438 * 6 4 3 8 8 C 1.47188 * 111.00032 * 188.93562 * 7 6 4 9 9 C 1.52993 * 108.71797 * 167.61721 * 8 7 6 10 10 N 1.46010 * 110.03826 * 50.30733 * 9 8 7 11 11 C 1.46495 * 118.54055 * 161.81756 * 10 9 8 12 12 C 1.33719 * 122.92782 * 341.83893 * 10 9 8 13 13 O 1.21279 * 118.62585 * 181.69035 * 12 10 9 14 14 C 1.46897 * 111.00120 * 66.04405 * 7 6 4 15 15 C 1.46503 * 119.99783 * 90.00314 * 3 2 1 16 16 H 1.09003 * 110.64635 * 359.29611 * 15 3 2 17 17 C 1.55164 * 110.87467 * 122.54799 * 15 3 2 18 18 C 1.54909 * 101.58107 * 153.93335 * 17 15 3 19 19 N 1.47419 * 104.83336 * 322.99002 * 18 17 15 20 20 C 1.36934 * 125.64727 * 204.15930 * 19 18 17 21 21 H 1.08001 * 120.00327 * 161.47381 * 20 19 18 22 22 C 1.38811 * 120.00192 * 341.48044 * 20 19 18 23 23 N 1.31626 * 119.99981 * 157.61286 * 22 20 19 24 24 Si 1.86803 * 120.00108 * 337.61632 * 22 20 19 25 25 H 1.48496 * 109.47350 * 84.53375 * 24 22 20 26 26 H 1.48498 * 109.47118 * 204.53604 * 24 22 20 27 27 H 1.48497 * 109.46713 * 324.53514 * 24 22 20 28 28 C 1.47021 * 108.70564 * 24.13035 * 19 18 17 29 29 H 1.09004 * 109.47119 * 299.99517 * 1 2 3 30 30 H 1.08999 * 109.47221 * 59.99752 * 1 2 3 31 31 H 1.08998 * 109.47301 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47333 * 240.00098 * 2 1 3 33 33 H 1.08999 * 109.47221 * 120.00248 * 2 1 3 34 34 H 1.08999 * 109.46853 * 299.99603 * 6 4 3 35 35 H 1.09003 * 109.47350 * 59.99542 * 6 4 3 36 36 H 1.08998 * 109.59435 * 287.40862 * 8 7 6 37 37 H 1.09008 * 109.59263 * 47.86113 * 8 7 6 38 38 H 1.09000 * 109.38002 * 290.13370 * 9 8 7 39 39 H 1.09002 * 109.28764 * 170.41647 * 9 8 7 40 40 H 1.08999 * 109.47477 * 180.02562 * 11 10 9 41 41 H 1.09006 * 109.47173 * 300.02457 * 11 10 9 42 42 H 1.09004 * 109.46832 * 60.01778 * 11 10 9 43 43 H 1.09002 * 109.38339 * 293.82393 * 14 7 6 44 44 H 1.09001 * 109.38870 * 53.61393 * 14 7 6 45 45 H 1.09002 * 110.99924 * 272.01216 * 17 15 3 46 46 H 1.09001 * 111.00099 * 35.85982 * 17 15 3 47 47 H 1.08997 * 110.36413 * 204.14649 * 18 17 15 48 48 H 1.09003 * 110.45619 * 81.88134 * 18 17 15 49 49 H 0.97009 * 119.99583 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.88083 * 239.52496 * 28 19 18 51 51 H 1.08996 * 109.88031 * 118.35646 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.6468 3.1602 -1.1671 6 6 1.9913 1.3064 -2.4723 7 7 2.3091 2.2066 -3.5888 8 6 1.8778 1.6284 -4.8718 9 6 1.9439 2.7148 -5.9469 10 7 3.2469 3.3727 -5.9139 11 6 3.6721 4.1429 -7.0853 12 6 4.0698 3.3033 -4.8621 13 8 5.1213 3.9060 -4.9063 14 6 3.7458 2.5104 -3.6276 15 6 2.2625 2.0718 1.2688 16 1 2.0203 1.4243 2.1116 17 6 3.7320 2.5619 1.3576 18 6 3.6014 3.7622 2.3281 19 7 2.3153 4.3922 1.9783 20 6 1.9779 5.6990 2.2093 21 1 1.1586 6.1490 1.6682 22 6 2.6888 6.4456 3.1389 23 7 2.6892 7.7598 3.0659 24 14 3.6451 5.5851 4.4934 25 1 4.9830 5.1928 3.9823 26 1 3.8064 6.5059 5.6471 27 1 2.9060 4.3725 4.9274 28 6 1.4552 3.3852 1.3398 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.6213 0.4188 -2.5302 35 1 0.9432 1.0126 -2.5299 36 1 2.5389 0.8051 -5.1423 37 1 0.8542 1.2641 -4.7828 38 1 1.1619 3.4519 -5.7648 39 1 1.7925 2.2615 -6.9266 40 1 4.6595 4.5668 -6.9027 41 1 3.7133 3.4877 -7.9555 42 1 2.9596 4.9470 -7.2695 43 1 4.0172 3.0889 -2.7445 44 1 4.3124 1.5793 -3.6384 45 1 4.3769 1.7892 1.7762 46 1 4.0954 2.8858 0.3823 47 1 4.4214 4.4639 2.1760 48 1 3.5858 3.4164 3.3617 49 1 3.1858 8.2815 3.7158 50 1 1.1872 3.7103 0.3345 51 1 0.5549 3.2352 1.9355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732183265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:05 Heat of formation + Delta-G solvation = 0.609555 kcal Electronic energy + Delta-G solvation = -31473.769265 eV Core-core repulsion = 27410.437668 eV Total energy + Delta-G solvation = -4063.331597 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.84671 -40.04441 -37.71603 -36.74802 -35.68594 -35.30040 -32.40061 -30.69524 -30.48983 -29.79215 -29.07891 -27.90584 -26.51353 -24.96260 -24.03125 -23.50811 -22.76133 -21.24953 -20.42815 -18.89716 -18.69406 -17.44743 -16.97762 -16.94212 -16.67024 -16.21647 -15.87225 -15.45780 -15.07342 -14.88615 -14.64327 -14.49235 -14.07668 -13.87274 -13.60410 -13.39196 -13.37788 -13.04841 -12.83087 -12.69099 -12.66888 -12.44965 -12.33322 -12.18723 -11.99072 -11.78054 -11.63390 -11.61388 -11.37703 -11.07830 -10.94505 -10.86811 -10.78626 -10.03718 -9.94158 -9.93425 -9.40067 -9.23592 -8.92204 -8.68953 -8.54300 -8.41678 -6.86142 -5.79606 -3.07753 2.50851 2.72811 2.78285 2.88826 3.45409 3.50170 3.55760 3.59129 4.27861 4.35881 4.40057 4.64995 4.68001 4.74381 4.76724 4.95201 4.96091 5.04526 5.07656 5.12250 5.14122 5.16753 5.18682 5.28008 5.32202 5.43911 5.45691 5.51075 5.53842 5.59590 5.63469 5.65443 5.72969 5.96316 6.00448 6.13458 6.15416 6.34091 6.36368 6.45263 6.55356 6.64836 6.75634 6.94445 7.09584 7.21632 7.52123 7.87980 8.02584 8.40158 8.46604 8.99482 9.84393 10.33914 11.37076 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011835 B = 0.003573 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.218681 B = 7835.055020 C = 9375.184250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 N -0.608 5.608 4 C 0.504 3.496 5 O -0.486 6.486 6 C 0.037 3.963 7 N -0.513 5.513 8 C 0.035 3.965 9 C 0.121 3.879 10 N -0.611 5.611 11 C 0.073 3.927 12 C 0.527 3.473 13 O -0.546 6.546 14 C 0.036 3.964 15 C 0.136 3.864 16 H 0.091 0.909 17 C -0.142 4.142 18 C 0.116 3.884 19 N -0.600 5.600 20 C -0.231 4.231 21 H 0.089 0.911 22 C 0.019 3.981 23 N -0.911 5.911 24 Si 0.883 3.117 25 H -0.286 1.286 26 H -0.304 1.304 27 H -0.278 1.278 28 C 0.134 3.866 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.046 0.954 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.138 0.862 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.087 0.913 47 H 0.059 0.941 48 H 0.022 0.978 49 H 0.261 0.739 50 H 0.049 0.951 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 -22.901 -17.793 29.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 N -0.343 5.343 4 C 0.290 3.710 5 O -0.358 6.358 6 C -0.094 4.094 7 N -0.239 5.239 8 C -0.093 4.093 9 C -0.002 4.002 10 N -0.345 5.345 11 C -0.070 4.070 12 C 0.315 3.685 13 O -0.423 6.423 14 C -0.094 4.094 15 C 0.033 3.967 16 H 0.109 0.891 17 C -0.181 4.181 18 C -0.009 4.009 19 N -0.327 5.327 20 C -0.358 4.358 21 H 0.107 0.893 22 C -0.179 4.179 23 N -0.556 5.556 24 Si 0.714 3.286 25 H -0.213 1.213 26 H -0.232 1.232 27 H -0.204 1.204 28 C 0.007 3.993 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.064 0.936 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.155 0.845 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.077 0.923 48 H 0.039 0.961 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.648 -21.254 -17.663 27.875 hybrid contribution 0.690 -1.326 0.797 1.694 sum -2.958 -22.580 -16.866 28.338 Atomic orbital electron populations 1.22249 0.95815 1.01995 1.03121 1.21565 0.94581 0.82722 1.02967 1.47998 1.66650 1.13746 1.05887 1.20305 0.78901 0.87163 0.84602 1.90827 1.42203 1.16417 1.86344 1.22150 1.03242 0.93966 0.90025 1.62140 1.16264 1.43561 1.01965 1.22551 1.02237 0.95511 0.89017 1.21478 0.84958 0.95227 0.98533 1.47294 1.18581 1.52071 1.16552 1.21731 1.02751 0.95790 0.86695 1.20109 0.83447 0.81150 0.83786 1.90724 1.25093 1.45177 1.81307 1.22538 0.87995 1.00189 0.98709 1.22152 0.96651 0.94198 0.83736 0.89094 1.23135 0.95053 0.97918 1.01973 1.21867 0.90652 0.93433 0.94972 1.44530 1.10149 1.07405 1.70626 1.18623 1.16854 0.82903 1.17421 0.89305 1.24966 0.98882 0.95023 0.99043 1.69870 1.44470 1.04339 1.36872 0.86949 0.79982 0.78475 0.83212 1.21302 1.23222 1.20421 1.21558 0.92533 0.87368 0.97819 0.91738 0.92392 0.91701 0.90775 0.90247 0.91827 0.87448 0.93592 0.88334 0.90537 0.90222 0.89134 0.92394 0.92096 0.84464 0.91632 0.92182 0.89414 0.92317 0.96052 0.92897 0.93261 0.95820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.24 37.15 0.38 -0.84 16 2 C 0.11 0.80 5.91 -4.05 -0.02 0.78 16 3 N -0.61 -7.60 2.54 -164.02 -0.42 -8.02 16 4 C 0.50 7.04 6.54 -10.99 -0.07 6.96 16 5 O -0.49 -9.42 10.66 5.56 0.06 -9.36 16 6 C 0.04 0.34 3.99 -4.97 -0.02 0.32 16 7 N -0.51 -5.58 4.47 -237.54 -1.06 -6.64 16 8 C 0.04 0.24 5.60 -3.67 -0.02 0.22 16 9 C 0.12 0.90 6.64 -4.31 -0.03 0.87 16 10 N -0.61 -6.77 3.23 -182.47 -0.59 -7.36 16 11 C 0.07 0.68 10.55 59.84 0.63 1.31 16 12 C 0.53 7.65 7.57 -11.67 -0.09 7.56 16 13 O -0.55 -10.02 16.07 5.56 0.09 -9.93 16 14 C 0.04 0.47 5.14 -5.19 -0.03 0.44 16 15 C 0.14 2.20 3.43 -66.09 -0.23 1.98 16 16 H 0.09 1.29 7.87 -51.93 -0.41 0.88 16 17 C -0.14 -2.59 6.42 -24.58 -0.16 -2.75 16 18 C 0.12 2.72 4.70 -2.53 -0.01 2.71 16 19 N -0.60 -15.66 3.21 -170.08 -0.55 -16.20 16 20 C -0.23 -7.03 10.57 -15.06 -0.16 -7.19 16 21 H 0.09 2.89 8.06 -52.49 -0.42 2.47 16 22 C 0.02 0.57 5.43 -17.43 -0.09 0.48 16 23 N -0.91 -29.71 13.97 55.49 0.78 -28.93 16 24 Si 0.88 23.71 24.27 -169.99 -4.13 19.58 16 25 H -0.29 -7.44 6.49 56.52 0.37 -7.08 16 26 H -0.30 -8.21 7.11 56.52 0.40 -7.81 16 27 H -0.28 -7.25 6.66 56.52 0.38 -6.87 16 28 C 0.13 2.84 6.47 -3.06 -0.02 2.82 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.42 7.22 -51.93 -0.37 0.04 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.39 6.44 -51.93 -0.33 0.06 16 33 H 0.08 0.54 7.96 -51.93 -0.41 0.13 16 34 H 0.06 0.44 7.31 -51.93 -0.38 0.06 16 35 H 0.11 0.74 6.98 -51.93 -0.36 0.38 16 36 H 0.05 0.27 8.08 -51.93 -0.42 -0.15 16 37 H 0.10 0.44 7.91 -51.92 -0.41 0.03 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.36 8.13 -51.93 -0.42 -0.06 16 40 H 0.09 1.04 6.67 -51.93 -0.35 0.69 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.14 2.31 6.01 -51.93 -0.31 1.99 16 44 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.09 1.75 6.04 -51.93 -0.31 1.44 16 47 H 0.06 1.50 6.64 -51.93 -0.34 1.16 16 48 H 0.02 0.51 5.57 -51.93 -0.29 0.22 16 49 H 0.26 8.06 8.31 -40.82 -0.34 7.73 16 50 H 0.05 1.14 6.06 -51.93 -0.31 0.82 16 51 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -39.73 384.17 -8.40 -48.13 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.44 Total: -2.73 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 0.06 Total: 15.66 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -1.84 Total: -67.14 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: 0.15 Total: -19.29 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.13 Total: 19.58 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.73 -8.40 -48.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732183265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.742 kcal (2) G-P(sol) polarization free energy of solvation -39.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds