Wall clock time and date at job start Tue Mar 31 2020 21:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47082 * 2 1 4 4 C 1.34773 * 120.00449 * 269.99718 * 3 2 1 5 5 O 1.21278 * 120.00468 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99831 * 0.02562 * 4 3 2 7 7 N 1.46901 * 109.47316 * 179.97438 * 6 4 3 8 8 C 1.47188 * 111.00032 * 188.93562 * 7 6 4 9 9 C 1.52993 * 108.71797 * 167.61721 * 8 7 6 10 10 N 1.46010 * 110.03826 * 50.30733 * 9 8 7 11 11 C 1.46495 * 118.54055 * 161.81756 * 10 9 8 12 12 C 1.33719 * 122.92782 * 341.83893 * 10 9 8 13 13 O 1.21279 * 118.62585 * 181.69035 * 12 10 9 14 14 C 1.46897 * 111.00120 * 66.04405 * 7 6 4 15 15 C 1.46503 * 119.99783 * 90.00314 * 3 2 1 16 16 H 1.09003 * 110.64635 * 359.29611 * 15 3 2 17 17 C 1.55164 * 110.87467 * 122.54799 * 15 3 2 18 18 C 1.54909 * 101.58107 * 153.93335 * 17 15 3 19 19 N 1.47419 * 104.83336 * 322.99002 * 18 17 15 20 20 C 1.36934 * 125.64727 * 204.15930 * 19 18 17 21 21 H 1.08001 * 120.00327 * 161.47381 * 20 19 18 22 22 C 1.38811 * 120.00192 * 341.48044 * 20 19 18 23 23 N 1.31626 * 119.99981 * 157.61286 * 22 20 19 24 24 Si 1.86803 * 120.00108 * 337.61632 * 22 20 19 25 25 H 1.48496 * 109.47350 * 84.53375 * 24 22 20 26 26 H 1.48498 * 109.47118 * 204.53604 * 24 22 20 27 27 H 1.48497 * 109.46713 * 324.53514 * 24 22 20 28 28 C 1.47021 * 108.70564 * 24.13035 * 19 18 17 29 29 H 1.09004 * 109.47119 * 299.99517 * 1 2 3 30 30 H 1.08999 * 109.47221 * 59.99752 * 1 2 3 31 31 H 1.08998 * 109.47301 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47333 * 240.00098 * 2 1 3 33 33 H 1.08999 * 109.47221 * 120.00248 * 2 1 3 34 34 H 1.08999 * 109.46853 * 299.99603 * 6 4 3 35 35 H 1.09003 * 109.47350 * 59.99542 * 6 4 3 36 36 H 1.08998 * 109.59435 * 287.40862 * 8 7 6 37 37 H 1.09008 * 109.59263 * 47.86113 * 8 7 6 38 38 H 1.09000 * 109.38002 * 290.13370 * 9 8 7 39 39 H 1.09002 * 109.28764 * 170.41647 * 9 8 7 40 40 H 1.08999 * 109.47477 * 180.02562 * 11 10 9 41 41 H 1.09006 * 109.47173 * 300.02457 * 11 10 9 42 42 H 1.09004 * 109.46832 * 60.01778 * 11 10 9 43 43 H 1.09002 * 109.38339 * 293.82393 * 14 7 6 44 44 H 1.09001 * 109.38870 * 53.61393 * 14 7 6 45 45 H 1.09002 * 110.99924 * 272.01216 * 17 15 3 46 46 H 1.09001 * 111.00099 * 35.85982 * 17 15 3 47 47 H 1.08997 * 110.36413 * 204.14649 * 18 17 15 48 48 H 1.09003 * 110.45619 * 81.88134 * 18 17 15 49 49 H 0.97009 * 119.99583 * 179.97438 * 23 22 20 50 50 H 1.09000 * 109.88083 * 239.52496 * 28 19 18 51 51 H 1.08996 * 109.88031 * 118.35646 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.6468 3.1602 -1.1671 6 6 1.9913 1.3064 -2.4723 7 7 2.3091 2.2066 -3.5888 8 6 1.8778 1.6284 -4.8718 9 6 1.9439 2.7148 -5.9469 10 7 3.2469 3.3727 -5.9139 11 6 3.6721 4.1429 -7.0853 12 6 4.0698 3.3033 -4.8621 13 8 5.1213 3.9060 -4.9063 14 6 3.7458 2.5104 -3.6276 15 6 2.2625 2.0718 1.2688 16 1 2.0203 1.4243 2.1116 17 6 3.7320 2.5619 1.3576 18 6 3.6014 3.7622 2.3281 19 7 2.3153 4.3922 1.9783 20 6 1.9779 5.6990 2.2093 21 1 1.1586 6.1490 1.6682 22 6 2.6888 6.4456 3.1389 23 7 2.6892 7.7598 3.0659 24 14 3.6451 5.5851 4.4934 25 1 4.9830 5.1928 3.9823 26 1 3.8064 6.5059 5.6471 27 1 2.9060 4.3725 4.9274 28 6 1.4552 3.3852 1.3398 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.6213 0.4188 -2.5302 35 1 0.9432 1.0126 -2.5299 36 1 2.5389 0.8051 -5.1423 37 1 0.8542 1.2641 -4.7828 38 1 1.1619 3.4519 -5.7648 39 1 1.7925 2.2615 -6.9266 40 1 4.6595 4.5668 -6.9027 41 1 3.7133 3.4877 -7.9555 42 1 2.9596 4.9470 -7.2695 43 1 4.0172 3.0889 -2.7445 44 1 4.3124 1.5793 -3.6384 45 1 4.3769 1.7892 1.7762 46 1 4.0954 2.8858 0.3823 47 1 4.4214 4.4639 2.1760 48 1 3.5858 3.4164 3.3617 49 1 3.1858 8.2815 3.7158 50 1 1.1872 3.7103 0.3345 51 1 0.5549 3.2352 1.9355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732183265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:04 Heat of formation + Delta-G solvation = -32.228402 kcal Electronic energy + Delta-G solvation = -31475.193226 eV Core-core repulsion = 27410.437668 eV Total energy + Delta-G solvation = -4064.755557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.80620 -41.14351 -39.00703 -37.97579 -36.76388 -36.21415 -34.47272 -32.14177 -31.18687 -30.78984 -30.48789 -29.31683 -27.53274 -26.15206 -25.53992 -24.21693 -23.57028 -22.80836 -22.11963 -19.80672 -19.70183 -18.98242 -18.24870 -17.89954 -17.70560 -17.26461 -17.09284 -16.99406 -16.37099 -16.07215 -15.61630 -15.47042 -15.34687 -15.18366 -14.66846 -14.62137 -14.50367 -14.27189 -14.02231 -13.80250 -13.76094 -13.53507 -13.42844 -13.25733 -13.01912 -12.90437 -12.87423 -12.66844 -12.52897 -12.45130 -12.30144 -12.26877 -12.08108 -11.89620 -11.60729 -11.50576 -11.05391 -10.83707 -10.40662 -9.78701 -9.55008 -9.41302 -9.03380 -8.19688 -5.45249 1.28715 1.34913 1.43588 1.46115 1.76340 1.90444 2.01275 2.40900 2.72604 2.99957 3.40398 3.47628 3.58302 3.78206 3.80191 3.90271 4.01713 4.09602 4.21329 4.26441 4.26871 4.36256 4.38510 4.40317 4.49042 4.52308 4.55093 4.60822 4.65699 4.71898 4.74591 4.76681 4.89823 4.90528 4.94683 4.99690 5.00845 5.07839 5.17118 5.27257 5.34421 5.49981 5.63865 5.65802 5.78818 5.89535 6.07587 6.31030 6.58328 6.75927 7.01250 7.41918 7.53022 8.09866 9.01159 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011835 B = 0.003573 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.218681 B = 7835.055020 C = 9375.184250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.099 3.901 3 N -0.603 5.603 4 C 0.494 3.506 5 O -0.553 6.553 6 C 0.048 3.952 7 N -0.539 5.539 8 C 0.037 3.963 9 C 0.112 3.888 10 N -0.607 5.607 11 C 0.069 3.931 12 C 0.513 3.487 13 O -0.603 6.603 14 C 0.047 3.953 15 C 0.154 3.846 16 H 0.126 0.874 17 C -0.129 4.129 18 C 0.108 3.892 19 N -0.621 5.621 20 C -0.234 4.234 21 H 0.044 0.956 22 C -0.044 4.044 23 N -0.962 5.962 24 Si 0.957 3.043 25 H -0.274 1.274 26 H -0.304 1.304 27 H -0.258 1.258 28 C 0.131 3.869 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.140 0.860 36 H 0.066 0.934 37 H 0.133 0.867 38 H 0.070 0.930 39 H 0.120 0.880 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.064 0.936 47 H 0.025 0.975 48 H 0.035 0.965 49 H 0.262 0.738 50 H 0.022 0.978 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.115 -28.749 -18.558 34.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.282 3.718 5 O -0.430 6.430 6 C -0.082 4.082 7 N -0.266 5.266 8 C -0.090 4.090 9 C -0.010 4.010 10 N -0.339 5.339 11 C -0.073 4.073 12 C 0.302 3.698 13 O -0.485 6.485 14 C -0.084 4.084 15 C 0.049 3.951 16 H 0.144 0.856 17 C -0.168 4.168 18 C -0.017 4.017 19 N -0.347 5.347 20 C -0.363 4.363 21 H 0.061 0.939 22 C -0.237 4.237 23 N -0.609 5.609 24 Si 0.785 3.215 25 H -0.200 1.200 26 H -0.232 1.232 27 H -0.182 1.182 28 C 0.005 3.995 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.158 0.842 36 H 0.084 0.916 37 H 0.151 0.849 38 H 0.089 0.911 39 H 0.138 0.862 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.121 0.879 46 H 0.083 0.917 47 H 0.044 0.956 48 H 0.053 0.947 49 H 0.071 0.929 50 H 0.040 0.960 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.656 -27.218 -18.471 33.222 hybrid contribution 0.842 0.541 0.867 1.324 sum -3.814 -26.677 -17.605 32.189 Atomic orbital electron populations 1.22230 0.95385 1.03411 1.01896 1.21974 0.94833 0.79722 1.05633 1.48087 1.66056 1.15440 1.04072 1.21327 0.77335 0.86621 0.86492 1.90829 1.45112 1.19649 1.87391 1.22208 1.05756 0.93745 0.86511 1.62028 1.14469 1.45740 1.04377 1.22733 1.04439 0.95388 0.86441 1.21861 0.82516 0.95475 1.01149 1.47503 1.19242 1.51323 1.15809 1.21856 1.01422 0.96843 0.87207 1.20512 0.83255 0.81027 0.84986 1.90683 1.27611 1.47719 1.82484 1.22198 0.90214 1.00063 0.95894 1.21889 0.93725 0.92472 0.87006 0.85588 1.23019 0.97421 0.96768 0.99568 1.21997 0.88123 0.94587 0.96950 1.44621 1.12466 1.06885 1.70777 1.18515 1.15552 0.85396 1.16841 0.93854 1.25725 1.00941 0.95613 1.01451 1.70022 1.46692 1.06225 1.37959 0.85772 0.79000 0.77718 0.79042 1.19971 1.23241 1.18242 1.21674 0.93049 0.89106 0.95628 0.94066 0.92633 0.88884 0.87257 0.88498 0.88119 0.84201 0.91609 0.84936 0.91130 0.86241 0.92131 0.88927 0.90989 0.89137 0.89571 0.87892 0.91735 0.95618 0.94715 0.92887 0.95998 0.95557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 10.24 71.98 0.74 -0.91 16 2 C 0.10 0.98 5.91 86.38 0.51 1.50 16 3 N -0.60 -13.30 2.54 -791.24 -2.01 -15.31 16 4 C 0.49 13.09 6.54 87.66 0.57 13.66 16 5 O -0.55 -22.43 10.66 -3.02 -0.03 -22.46 16 6 C 0.05 0.70 3.99 85.56 0.34 1.04 16 7 N -0.54 -10.60 4.47 -905.44 -4.05 -14.65 16 8 C 0.04 0.35 5.60 86.25 0.48 0.83 16 9 C 0.11 1.31 6.64 86.47 0.57 1.88 16 10 N -0.61 -12.96 3.23 -850.19 -2.74 -15.70 16 11 C 0.07 1.25 10.55 127.77 1.35 2.59 16 12 C 0.51 15.45 7.57 87.68 0.66 16.11 16 13 O -0.60 -23.90 16.07 -3.03 -0.05 -23.95 16 14 C 0.05 1.23 5.14 85.42 0.44 1.67 16 15 C 0.15 4.65 3.43 46.18 0.16 4.81 16 16 H 0.13 2.99 7.87 -2.39 -0.02 2.97 16 17 C -0.13 -4.53 6.42 31.99 0.21 -4.32 16 18 C 0.11 5.04 4.70 86.86 0.41 5.45 16 19 N -0.62 -33.45 3.21 -692.01 -2.22 -35.67 16 20 C -0.23 -15.14 10.57 84.03 0.89 -14.25 16 21 H 0.04 3.09 8.06 -2.91 -0.02 3.06 16 22 C -0.04 -2.81 5.43 84.86 0.46 -2.35 16 23 N -0.96 -66.04 13.97 21.65 0.30 -65.73 16 24 Si 0.96 50.27 24.27 68.60 1.66 51.93 16 25 H -0.27 -13.73 6.49 99.48 0.65 -13.08 16 26 H -0.30 -15.86 7.11 99.48 0.71 -15.15 16 27 H -0.26 -12.57 6.66 99.48 0.66 -11.90 16 28 C 0.13 5.68 6.47 86.73 0.56 6.24 16 29 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.57 7.22 -2.39 -0.02 0.55 16 31 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.11 0.39 6.44 -2.39 -0.02 0.38 16 33 H 0.10 0.71 7.96 -2.39 -0.02 0.69 16 34 H 0.10 0.78 7.31 -2.39 -0.02 0.77 16 35 H 0.14 1.17 6.98 -2.39 -0.02 1.15 16 36 H 0.07 0.42 8.08 -2.39 -0.02 0.40 16 37 H 0.13 0.39 7.91 -2.38 -0.02 0.37 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.12 0.50 8.13 -2.39 -0.02 0.49 16 40 H 0.06 1.48 6.67 -2.39 -0.02 1.47 16 41 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.09 3.31 6.01 -2.39 -0.01 3.29 16 44 H 0.09 1.78 8.05 -2.39 -0.02 1.76 16 45 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 46 H 0.06 2.62 6.04 -2.39 -0.01 2.60 16 47 H 0.03 1.34 6.64 -2.39 -0.02 1.33 16 48 H 0.04 1.55 5.57 -2.39 -0.01 1.54 16 49 H 0.26 16.95 8.31 -92.70 -0.77 16.17 16 50 H 0.02 1.07 6.06 -2.39 -0.01 1.05 16 51 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -99.87 384.17 0.04 -99.83 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.81 Total: 7.76 kcal Atomic # 6 Polarization: 25.61 SS G_CDS: 8.35 Total: 33.96 kcal Atomic # 7 Polarization: -136.35 SS G_CDS: -10.72 Total: -147.07 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -0.08 Total: -46.41 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 1.66 Total: 51.93 kcal Total: -99.87 0.04 -99.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732183265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.601 kcal (2) G-P(sol) polarization free energy of solvation -99.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds