Wall clock time and date at job start Tue Mar 31 2020 21:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47066 * 2 1 4 4 C 1.53006 * 109.47002 * 119.99631 * 2 1 3 5 5 N 1.46898 * 109.47138 * 295.00272 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46922 * 90.00327 * 14 12 10 16 16 H 1.48500 * 109.47032 * 210.00074 * 14 12 10 17 17 H 1.48489 * 109.47076 * 330.00276 * 14 12 10 18 18 C 1.52993 * 109.47412 * 239.99914 * 2 1 3 19 19 N 1.46497 * 109.47162 * 64.99947 * 18 2 1 20 20 C 1.34781 * 120.00055 * 180.02562 * 19 18 2 21 21 O 1.21277 * 120.00228 * 359.97438 * 20 19 18 22 22 C 1.50704 * 119.99940 * 179.97438 * 20 19 18 23 23 C 1.56237 * 116.68931 * 62.58559 * 22 20 19 24 24 C 1.56953 * 102.16501 * 159.28863 * 23 22 20 25 25 N 1.49515 * 105.46637 * 1.12692 * 24 23 22 26 26 C 1.49520 * 105.92435 * 70.93921 * 25 24 23 27 27 C 1.54655 * 105.28751 * 288.73757 * 26 25 24 28 28 C 1.50463 * 102.03703 * 324.53042 * 25 24 23 29 29 H 1.08997 * 109.46495 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47106 * 299.99913 * 1 2 3 31 31 H 1.09000 * 109.46646 * 60.00270 * 1 2 3 32 32 H 1.08997 * 109.46770 * 175.00218 * 4 2 1 33 33 H 1.08995 * 109.47019 * 55.00432 * 4 2 1 34 34 H 1.00904 * 110.99913 * 303.95145 * 5 4 2 35 35 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 36 36 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 37 37 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 39 39 H 1.09005 * 109.47499 * 184.99789 * 18 2 1 40 40 H 1.09001 * 109.47061 * 305.00314 * 18 2 1 41 41 H 0.96998 * 119.99871 * 359.97438 * 19 18 2 42 42 H 1.09005 * 110.67102 * 277.38766 * 23 22 20 43 43 H 1.09001 * 110.67310 * 40.52019 * 23 22 20 44 44 H 1.09000 * 110.46040 * 241.97258 * 24 23 22 45 45 H 1.08992 * 109.92063 * 119.99752 * 24 23 22 46 46 H 1.09007 * 110.27958 * 169.78213 * 26 25 24 47 47 H 1.09001 * 110.28054 * 47.69300 * 26 25 24 48 48 H 1.09005 * 110.67072 * 240.91402 * 27 26 25 49 49 H 1.08996 * 110.66774 * 117.77053 * 27 26 25 50 50 H 1.09001 * 112.69606 * 297.54294 * 28 25 24 51 51 H 1.08999 * 111.12755 * 171.34159 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4457 6 6 2.1257 -0.6264 3.6673 7 6 1.7097 0.1794 4.8709 8 8 1.0796 1.2055 4.7253 9 7 2.0379 -0.2402 6.1089 10 6 1.6589 0.4926 7.2038 11 1 1.0979 1.4062 7.0744 12 6 1.9967 0.0598 8.4803 13 7 2.6790 -1.0522 8.6379 14 14 1.4810 1.0586 9.9722 15 1 0.1481 0.5993 10.4387 16 1 2.4762 0.8748 11.0590 17 1 1.4088 2.4956 9.6050 18 6 2.0401 -0.7212 -1.2491 19 7 1.6526 0.0353 -2.4423 20 6 1.9957 -0.4137 -3.6659 21 8 2.6258 -1.4437 -3.7792 22 6 1.5966 0.3643 -4.8933 23 6 2.1822 1.8062 -5.0315 24 6 2.0391 2.0752 -6.5712 25 7 1.3961 0.8475 -7.1323 26 6 -0.0182 0.8671 -6.6476 27 6 0.0649 0.5570 -5.1347 28 6 2.0026 -0.2390 -6.2864 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 3.1263 -0.7994 1.2057 33 1 1.6055 -1.7197 1.2953 34 1 1.9881 0.9874 2.3967 35 1 1.6921 -1.6245 3.7302 36 1 3.2127 -0.7036 3.6401 37 1 2.5415 -1.0610 6.2252 38 1 2.9152 -1.3542 9.5290 39 1 3.1264 -0.7994 -1.2055 40 1 1.6054 -1.7198 -1.2951 41 1 1.1483 0.8590 -2.3517 42 1 1.5909 2.5185 -4.4560 43 1 3.2260 1.8292 -4.7181 44 1 3.0186 2.2292 -7.0237 45 1 1.4036 2.9447 -6.7387 46 1 -0.6033 0.1023 -7.1585 47 1 -0.4590 1.8510 -6.8080 48 1 -0.4797 -0.3573 -4.8988 49 1 -0.3146 1.3942 -4.5490 50 1 3.0845 -0.3064 -6.4006 51 1 1.5179 -1.1976 -6.4713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732366023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:06 Heat of formation + Delta-G solvation = -57.362300 kcal Electronic energy + Delta-G solvation = -28746.653575 eV Core-core repulsion = 24680.808130 eV Total energy + Delta-G solvation = -4065.845445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.55471 -39.40893 -38.37791 -37.20123 -34.95787 -33.88963 -32.57068 -31.24756 -31.10953 -31.01201 -28.55952 -27.44368 -26.83622 -24.92707 -23.43069 -23.07165 -22.27856 -21.25503 -20.77155 -19.64231 -19.12708 -17.90007 -17.41374 -16.62690 -16.53342 -15.95880 -15.86292 -15.82196 -15.30765 -15.09933 -14.71448 -14.34093 -14.25290 -13.83900 -13.68919 -13.51235 -13.34104 -13.23180 -13.07901 -12.74575 -12.65929 -12.42925 -12.20100 -11.97248 -11.95309 -11.75886 -11.69951 -11.53541 -11.30123 -11.18415 -11.07468 -11.01369 -10.92844 -10.82862 -10.40982 -10.23656 -10.14130 -9.57908 -9.52592 -9.39554 -8.48774 -8.08587 -7.97591 -6.43253 -3.84240 2.20336 2.74502 3.16636 3.25338 3.30705 3.31057 3.88653 3.89321 3.94903 4.06520 4.26072 4.27533 4.42881 4.44879 4.56525 4.65400 4.70462 4.76432 4.89070 4.96463 5.01686 5.07783 5.14630 5.20450 5.24098 5.28172 5.28811 5.32011 5.41799 5.42200 5.48292 5.54444 5.56652 5.63405 5.71933 5.83124 5.84400 5.94680 5.96229 6.01068 6.11187 6.16312 6.24797 6.34669 7.12880 7.16542 7.53585 7.61483 7.85709 8.04588 8.59486 9.16162 9.52661 10.03910 10.74419 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.001493 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.901236 B =18743.558988 C =19045.750834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.123 3.877 19 N -0.721 5.721 20 C 0.549 3.451 21 O -0.534 6.534 22 C -0.134 4.134 23 C -0.135 4.135 24 C 0.013 3.987 25 N -0.466 5.466 26 C 0.013 3.987 27 C -0.136 4.136 28 C 0.041 3.959 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.348 0.652 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.401 0.599 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.094 0.906 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.691 2.499 -29.304 29.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.001 4.001 19 N -0.373 5.373 20 C 0.334 3.666 21 O -0.411 6.411 22 C -0.139 4.139 23 C -0.174 4.174 24 C -0.117 4.117 25 N -0.185 5.185 26 C -0.116 4.116 27 C -0.175 4.175 28 C -0.088 4.088 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.167 0.833 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.226 0.774 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.236 0.764 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.112 0.888 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.159 2.019 -30.028 30.173 hybrid contribution 0.701 0.573 1.988 2.185 sum -1.458 2.593 -28.040 28.197 Atomic orbital electron populations 1.21757 0.93709 1.02199 1.02052 1.21340 0.97631 0.99930 0.92949 0.90546 1.21895 0.97360 0.97986 0.89204 1.60050 1.64132 1.05826 0.99790 1.21671 0.97762 0.98672 0.90105 1.19803 0.85565 0.87937 0.84088 1.90516 1.44125 1.26468 1.85742 1.41866 1.49423 1.24264 1.04451 1.19704 1.32887 1.06768 0.83630 0.87920 1.25268 0.96884 0.96661 0.99121 1.69615 1.38802 1.21767 1.24077 0.85850 0.78182 0.79897 0.80308 1.20381 1.20933 1.19446 1.21434 1.00105 0.95484 0.83045 1.45982 1.57692 1.27889 1.05694 1.19427 0.78971 0.84814 0.83369 1.90728 1.39605 1.24128 1.86594 1.23825 0.97890 0.96842 0.95374 1.23622 1.01985 0.93652 0.98123 1.24022 1.01176 0.94415 0.92042 1.69995 1.02679 1.03102 1.42727 1.23621 0.92174 1.02932 0.92905 1.23243 0.93335 1.02859 0.98089 1.24334 1.01432 0.96165 0.86880 0.92750 0.90366 0.93807 0.95258 0.90703 0.83264 0.89572 0.93869 0.77446 0.91860 0.91375 0.91086 0.76444 0.90310 0.90510 0.89494 0.90179 0.89542 0.90105 0.90578 0.90361 0.88766 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.95 37.16 0.33 -1.00 16 2 C -0.10 -0.91 2.57 -90.62 -0.23 -1.14 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.07 0.74 5.07 -3.82 -0.02 0.72 16 5 N -0.67 -10.08 5.58 -115.05 -0.64 -10.72 16 6 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 7 C 0.44 10.27 7.82 -10.99 -0.09 10.18 16 8 O -0.58 -15.63 15.78 5.55 0.09 -15.54 16 9 N -0.56 -14.20 5.29 -10.97 -0.06 -14.26 16 10 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 14 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 18 C 0.12 1.10 5.06 -4.05 -0.02 1.08 16 19 N -0.72 -5.68 5.28 -60.30 -0.32 -6.00 16 20 C 0.55 5.27 7.29 -10.98 -0.08 5.19 16 21 O -0.53 -7.25 16.56 5.56 0.09 -7.16 16 22 C -0.13 -0.94 1.36 -149.93 -0.20 -1.14 16 23 C -0.13 -0.73 6.21 -22.85 -0.14 -0.87 16 24 C 0.01 0.07 6.67 -0.22 0.00 0.07 16 25 N -0.47 -3.22 6.94 -220.54 -1.53 -4.75 16 26 C 0.01 0.07 6.60 -1.49 -0.01 0.06 16 27 C -0.14 -0.74 6.02 -24.12 -0.15 -0.88 16 28 C 0.04 0.32 6.08 0.43 0.00 0.32 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.94 7.75 -51.93 -0.40 0.53 16 31 H 0.04 0.34 7.18 -51.93 -0.37 -0.04 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.35 5.44 8.43 -39.29 -0.33 5.11 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.40 2.37 7.65 -40.82 -0.31 2.06 16 42 H 0.08 0.33 7.78 -51.93 -0.40 -0.07 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.35 7.69 -51.93 -0.40 -0.05 16 46 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.35 7.69 -51.93 -0.40 -0.05 16 48 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.08 0.33 7.78 -51.93 -0.40 -0.07 16 50 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.09 0.74 8.13 -51.93 -0.42 0.32 16 LS Contribution 409.72 15.07 6.17 6.17 Total: -1.00 -32.78 409.72 -10.15 -42.92 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -8.78 Total: 11.69 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.88 Total: 5.43 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -1.82 Total: -59.43 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.18 Total: -22.70 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.78 -10.15 -42.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732366023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.438 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds