Wall clock time and date at job start Tue Mar 31 2020 21:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47066 * 2 1 4 4 C 1.53006 * 109.47002 * 119.99631 * 2 1 3 5 5 N 1.46898 * 109.47138 * 295.00272 * 4 2 1 6 6 C 1.46906 * 110.99888 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47140 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99678 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99614 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99518 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00466 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00085 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99807 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00303 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46922 * 90.00327 * 14 12 10 16 16 H 1.48500 * 109.47032 * 210.00074 * 14 12 10 17 17 H 1.48489 * 109.47076 * 330.00276 * 14 12 10 18 18 C 1.52993 * 109.47412 * 239.99914 * 2 1 3 19 19 N 1.46497 * 109.47162 * 64.99947 * 18 2 1 20 20 C 1.34781 * 120.00055 * 180.02562 * 19 18 2 21 21 O 1.21277 * 120.00228 * 359.97438 * 20 19 18 22 22 C 1.50704 * 119.99940 * 179.97438 * 20 19 18 23 23 C 1.56237 * 116.68931 * 62.58559 * 22 20 19 24 24 C 1.56953 * 102.16501 * 159.28863 * 23 22 20 25 25 N 1.49515 * 105.46637 * 1.12692 * 24 23 22 26 26 C 1.49520 * 105.92435 * 70.93921 * 25 24 23 27 27 C 1.54655 * 105.28751 * 288.73757 * 26 25 24 28 28 C 1.50463 * 102.03703 * 324.53042 * 25 24 23 29 29 H 1.08997 * 109.46495 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47106 * 299.99913 * 1 2 3 31 31 H 1.09000 * 109.46646 * 60.00270 * 1 2 3 32 32 H 1.08997 * 109.46770 * 175.00218 * 4 2 1 33 33 H 1.08995 * 109.47019 * 55.00432 * 4 2 1 34 34 H 1.00904 * 110.99913 * 303.95145 * 5 4 2 35 35 H 1.09004 * 109.47040 * 299.99934 * 6 5 4 36 36 H 1.09000 * 109.47033 * 59.99886 * 6 5 4 37 37 H 0.96996 * 120.00269 * 359.97438 * 9 7 6 38 38 H 0.97002 * 120.00022 * 179.97438 * 13 12 10 39 39 H 1.09005 * 109.47499 * 184.99789 * 18 2 1 40 40 H 1.09001 * 109.47061 * 305.00314 * 18 2 1 41 41 H 0.96998 * 119.99871 * 359.97438 * 19 18 2 42 42 H 1.09005 * 110.67102 * 277.38766 * 23 22 20 43 43 H 1.09001 * 110.67310 * 40.52019 * 23 22 20 44 44 H 1.09000 * 110.46040 * 241.97258 * 24 23 22 45 45 H 1.08992 * 109.92063 * 119.99752 * 24 23 22 46 46 H 1.09007 * 110.27958 * 169.78213 * 26 25 24 47 47 H 1.09001 * 110.28054 * 47.69300 * 26 25 24 48 48 H 1.09005 * 110.67072 * 240.91402 * 27 26 25 49 49 H 1.08996 * 110.66774 * 117.77053 * 27 26 25 50 50 H 1.09001 * 112.69606 * 297.54294 * 28 25 24 51 51 H 1.08999 * 111.12755 * 171.34159 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6513 0.0375 2.4457 6 6 2.1257 -0.6264 3.6673 7 6 1.7097 0.1794 4.8709 8 8 1.0796 1.2055 4.7253 9 7 2.0379 -0.2402 6.1089 10 6 1.6589 0.4926 7.2038 11 1 1.0979 1.4062 7.0744 12 6 1.9967 0.0598 8.4803 13 7 2.6790 -1.0522 8.6379 14 14 1.4810 1.0586 9.9722 15 1 0.1481 0.5993 10.4387 16 1 2.4762 0.8748 11.0590 17 1 1.4088 2.4956 9.6050 18 6 2.0401 -0.7212 -1.2491 19 7 1.6526 0.0353 -2.4423 20 6 1.9957 -0.4137 -3.6659 21 8 2.6258 -1.4437 -3.7792 22 6 1.5966 0.3643 -4.8933 23 6 2.1822 1.8062 -5.0315 24 6 2.0391 2.0752 -6.5712 25 7 1.3961 0.8475 -7.1323 26 6 -0.0182 0.8671 -6.6476 27 6 0.0649 0.5570 -5.1347 28 6 2.0026 -0.2390 -6.2864 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 3.1263 -0.7994 1.2057 33 1 1.6055 -1.7197 1.2953 34 1 1.9881 0.9874 2.3967 35 1 1.6921 -1.6245 3.7302 36 1 3.2127 -0.7036 3.6401 37 1 2.5415 -1.0610 6.2252 38 1 2.9152 -1.3542 9.5290 39 1 3.1264 -0.7994 -1.2055 40 1 1.6054 -1.7198 -1.2951 41 1 1.1483 0.8590 -2.3517 42 1 1.5909 2.5185 -4.4560 43 1 3.2260 1.8292 -4.7181 44 1 3.0186 2.2292 -7.0237 45 1 1.4036 2.9447 -6.7387 46 1 -0.6033 0.1023 -7.1585 47 1 -0.4590 1.8510 -6.8080 48 1 -0.4797 -0.3573 -4.8988 49 1 -0.3146 1.3942 -4.5490 50 1 3.0845 -0.3064 -6.4006 51 1 1.5179 -1.1976 -6.4713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732366023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:05 Heat of formation + Delta-G solvation = -84.534011 kcal Electronic energy + Delta-G solvation = -28747.831829 eV Core-core repulsion = 24680.808130 eV Total energy + Delta-G solvation = -4067.023699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.10371 -40.25305 -40.03281 -38.23322 -36.20219 -35.66641 -33.56958 -33.19077 -31.63150 -31.51993 -29.06975 -28.82555 -27.64067 -26.54997 -24.66430 -23.48414 -23.05799 -21.81048 -21.58952 -21.02934 -20.19818 -19.85635 -18.02620 -17.83072 -17.17355 -17.12348 -16.95420 -16.53921 -16.28005 -16.25038 -16.06508 -15.69834 -15.35914 -15.19527 -14.82723 -14.40180 -14.28428 -13.93191 -13.77103 -13.74398 -13.56221 -13.41091 -13.18738 -13.14624 -13.02674 -12.84632 -12.69396 -12.42212 -12.41880 -12.26687 -12.12573 -12.02692 -12.00019 -11.72966 -11.66805 -11.50474 -11.26784 -10.92526 -10.34370 -10.15208 -10.05497 -10.01627 -9.30565 -8.46732 -5.95642 1.38272 1.42093 1.47623 1.54767 2.04287 2.05568 2.29560 2.80510 2.94714 3.20706 3.41136 3.45109 3.52591 3.72166 3.85459 3.87780 4.00120 4.02210 4.06129 4.15549 4.30698 4.32657 4.47028 4.48690 4.49393 4.52283 4.57854 4.61773 4.62221 4.76350 4.77945 4.82917 4.83963 4.91879 4.93547 4.95794 5.02446 5.07259 5.13148 5.24556 5.40120 5.40862 5.48128 5.52857 5.68482 5.88146 6.09577 6.41048 6.47684 6.59883 7.12420 7.15487 7.56325 8.11264 8.70589 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.001493 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.901236 B =18743.558988 C =19045.750834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.084 0.916 4 C 0.066 3.934 5 N -0.676 5.676 6 C 0.064 3.936 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.335 4.335 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.994 3.006 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.130 3.870 19 N -0.709 5.709 20 C 0.548 3.452 21 O -0.580 6.580 22 C -0.135 4.135 23 C -0.127 4.127 24 C 0.013 3.987 25 N -0.479 5.479 26 C 0.013 3.987 27 C -0.129 4.129 28 C 0.037 3.963 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.345 0.655 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.413 0.587 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.069 0.931 49 H 0.098 0.902 50 H 0.082 0.918 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 3.410 -29.838 30.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.102 0.898 4 C -0.063 4.063 5 N -0.308 5.308 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.464 4.464 11 H 0.098 0.902 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.006 3.994 19 N -0.360 5.360 20 C 0.334 3.666 21 O -0.460 6.460 22 C -0.140 4.140 23 C -0.166 4.166 24 C -0.116 4.116 25 N -0.199 5.199 26 C -0.116 4.116 27 C -0.168 4.168 28 C -0.092 4.092 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.163 0.837 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.250 0.750 42 H 0.117 0.883 43 H 0.088 0.912 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.103 0.897 47 H 0.116 0.884 48 H 0.088 0.912 49 H 0.117 0.883 50 H 0.101 0.899 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.603 2.932 -30.572 30.823 hybrid contribution 0.835 0.275 2.077 2.255 sum -1.768 3.207 -28.495 28.730 Atomic orbital electron populations 1.21703 0.93810 1.01909 1.01892 1.21194 0.97312 1.00048 0.91961 0.89752 1.21972 0.98180 0.97839 0.88353 1.60044 1.64625 1.05938 1.00237 1.21527 0.99068 0.98054 0.88156 1.20876 0.83872 0.87631 0.85064 1.90483 1.45517 1.28359 1.86499 1.41944 1.50002 1.24383 1.04792 1.19681 1.34411 1.07036 0.85321 0.90234 1.26048 0.96420 0.97587 1.01233 1.69676 1.38908 1.22521 1.25033 0.84917 0.78217 0.78166 0.76974 1.19691 1.19589 1.19702 1.21272 0.99678 0.95225 0.83213 1.45868 1.57133 1.28035 1.04979 1.19846 0.78099 0.84309 0.84302 1.90708 1.41789 1.26238 1.87248 1.23735 0.99329 0.97316 0.93574 1.23621 1.01840 0.92732 0.98452 1.24075 1.01440 0.94289 0.91806 1.69973 1.03597 1.03322 1.42977 1.23677 0.91339 1.03867 0.92704 1.23235 0.91757 1.03366 0.98422 1.24269 1.00719 0.96278 0.87965 0.93120 0.92792 0.91654 0.94135 0.90399 0.83677 0.87964 0.91678 0.77006 0.91321 0.91928 0.91845 0.74960 0.88305 0.91198 0.89680 0.88514 0.89714 0.88435 0.91235 0.88342 0.89938 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.95 71.98 0.64 -1.72 16 2 C -0.09 -1.41 2.57 -10.79 -0.03 -1.44 16 3 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.07 1.37 5.07 86.31 0.44 1.81 16 5 N -0.68 -19.65 5.58 -517.92 -2.89 -22.54 16 6 C 0.06 2.13 6.17 85.56 0.53 2.66 16 7 C 0.44 20.50 7.82 87.66 0.69 21.19 16 8 O -0.62 -33.83 15.78 -3.06 -0.05 -33.88 16 9 N -0.57 -29.26 5.29 -306.99 -1.62 -30.88 16 10 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 11 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 12 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 13 N -0.92 -49.52 13.05 21.66 0.28 -49.24 16 14 Si 0.99 42.67 29.55 68.60 2.03 44.69 16 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 18 C 0.13 2.15 5.06 86.38 0.44 2.58 16 19 N -0.71 -9.96 5.28 -463.06 -2.45 -12.40 16 20 C 0.55 10.09 7.29 87.66 0.64 10.73 16 21 O -0.58 -15.93 16.56 -3.02 -0.05 -15.98 16 22 C -0.13 -1.71 1.36 -49.22 -0.07 -1.78 16 23 C -0.13 -1.12 6.21 33.11 0.21 -0.91 16 24 C 0.01 0.11 6.67 87.18 0.58 0.69 16 25 N -0.48 -6.07 6.94 -851.67 -5.91 -11.98 16 26 C 0.01 0.11 6.60 86.36 0.57 0.68 16 27 C -0.13 -1.12 6.02 32.29 0.19 -0.93 16 28 C 0.04 0.57 6.08 87.06 0.53 1.10 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 1.24 7.75 -2.39 -0.02 1.22 16 31 H 0.06 0.84 7.18 -2.39 -0.02 0.82 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 34 H 0.34 10.45 8.43 -89.69 -0.76 9.69 16 35 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 38 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 39 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.41 3.76 7.65 -92.71 -0.71 3.05 16 42 H 0.10 0.49 7.78 -2.38 -0.02 0.47 16 43 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.10 0.56 7.69 -2.39 -0.02 0.54 16 46 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.10 0.55 7.69 -2.39 -0.02 0.54 16 48 H 0.07 0.71 8.14 -2.38 -0.02 0.70 16 49 H 0.10 0.47 7.78 -2.39 -0.02 0.46 16 50 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.08 1.37 8.13 -2.39 -0.02 1.35 16 Total: -1.00 -71.96 409.72 -5.27 -77.22 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: -1.25 Total: 38.70 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 6.64 Total: 16.30 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -12.59 Total: -127.04 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -0.10 Total: -49.86 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -71.96 -5.27 -77.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732366023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.309 kcal (2) G-P(sol) polarization free energy of solvation -71.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds