Wall clock time and date at job start Tue Mar 31 2020 22:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47846 * 110.99803 * 2 1 4 4 C 1.54906 * 104.79718 * 146.36186 * 3 2 1 5 5 C 1.55140 * 101.65106 * 322.93558 * 4 3 2 6 6 C 1.47437 * 111.00151 * 120.84281 * 2 1 3 7 7 H 1.09001 * 109.88856 * 117.17697 * 6 2 1 8 8 C 1.50706 * 109.88642 * 356.14953 * 6 2 1 9 9 O 1.21273 * 120.00336 * 309.05455 * 8 6 2 10 10 N 1.34780 * 119.99408 * 129.05461 * 8 6 2 11 11 C 1.46501 * 119.99276 * 179.97438 * 10 8 6 12 12 H 1.08998 * 109.47327 * 324.99533 * 11 10 8 13 13 C 1.53009 * 109.46888 * 205.00085 * 11 10 8 14 14 N 1.46905 * 109.46789 * 54.99899 * 13 11 10 15 15 C 1.46903 * 110.99519 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47092 * 180.02562 * 15 14 13 17 17 O 1.21298 * 119.99572 * 359.97438 * 16 15 14 18 18 N 1.34770 * 120.00206 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99971 * 179.97438 * 18 16 15 20 20 H 1.07990 * 120.00143 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99451 * 179.97438 * 19 18 16 22 22 N 1.31404 * 120.00397 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99550 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.47241 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47224 * 120.00193 * 23 21 19 26 26 H 1.48502 * 109.47203 * 240.00603 * 23 21 19 27 27 C 1.52997 * 109.47270 * 85.00322 * 11 10 8 28 28 C 1.53001 * 117.49509 * 8.61752 * 27 11 10 29 29 C 1.52998 * 59.99960 * 252.51029 * 28 27 11 30 30 H 1.08996 * 109.47605 * 308.83085 * 1 2 3 31 31 H 1.09001 * 109.47354 * 68.83674 * 1 2 3 32 32 H 1.09007 * 109.46865 * 188.83012 * 1 2 3 33 33 H 1.09002 * 110.37679 * 265.19552 * 3 2 1 34 34 H 1.09002 * 110.37176 * 27.42363 * 3 2 1 35 35 H 1.09002 * 110.98368 * 81.01987 * 4 3 2 36 36 H 1.09000 * 110.99052 * 204.83706 * 4 3 2 37 37 H 1.09004 * 110.70009 * 277.26559 * 5 4 3 38 38 H 1.09002 * 110.70250 * 154.03758 * 5 4 3 39 39 H 0.96998 * 120.00252 * 0.02562 * 10 8 6 40 40 H 1.08997 * 109.47014 * 175.00304 * 13 11 10 41 41 H 1.09000 * 109.46855 * 295.00315 * 13 11 10 42 42 H 1.00891 * 111.00460 * 303.95461 * 14 13 11 43 43 H 1.09006 * 109.47016 * 300.00078 * 15 14 13 44 44 H 1.08993 * 109.47198 * 60.00160 * 15 14 13 45 45 H 0.96998 * 119.99778 * 359.97438 * 18 16 15 46 46 H 0.97003 * 119.99940 * 179.97438 * 22 21 19 47 47 H 1.09003 * 115.55251 * 154.32432 * 27 11 10 48 48 H 1.08997 * 117.50020 * 0.02562 * 28 27 11 49 49 H 1.09008 * 117.49554 * 145.02027 * 28 27 11 50 50 H 1.09003 * 117.50071 * 252.51161 * 29 28 27 51 51 H 1.08998 * 117.51363 * 107.47954 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3046 1.3028 0.8296 5 6 2.9158 0.2822 1.9314 6 6 1.9974 -0.7057 1.1818 7 1 2.5674 -1.5800 0.8675 8 6 0.8611 -1.1291 2.0766 9 8 0.0223 -0.3213 2.4150 10 7 0.7771 -2.4057 2.5006 11 6 -0.3272 -2.8172 3.3709 12 1 -0.5840 -1.9990 4.0436 13 6 0.0970 -4.0375 4.1908 14 7 1.3348 -3.7309 4.9202 15 6 1.7735 -4.8825 5.7198 16 6 3.0426 -4.5311 6.4525 17 8 3.5336 -3.4298 6.3211 18 7 3.6326 -5.4408 7.2530 19 6 4.7874 -5.1212 7.9192 20 1 5.2241 -4.1404 7.8028 21 6 5.3953 -6.0590 8.7448 22 7 4.8636 -7.2523 8.8868 23 14 6.9684 -5.6234 9.6531 24 1 7.3584 -4.2281 9.3266 25 1 6.7452 -5.7450 11.1162 26 1 8.0521 -6.5504 9.2389 27 6 -1.5442 -3.1755 2.5157 28 6 -1.3468 -3.2451 1.0001 29 6 -2.1236 -2.0807 1.6177 30 1 -0.3634 0.6443 0.8005 31 1 -0.3634 0.3710 -0.9584 32 1 -0.3633 -1.0156 0.1578 33 1 2.2147 1.7039 -1.0182 34 1 1.2880 2.0595 0.4706 35 1 4.1301 0.9283 0.2242 36 1 3.5494 2.2721 1.2640 37 1 2.3743 0.7747 2.7391 38 1 3.8001 -0.2278 2.3136 39 1 1.4482 -3.0518 2.2302 40 1 -0.6904 -4.2896 4.9010 41 1 0.2683 -4.8820 3.5232 42 1 2.0623 -3.4317 4.2883 43 1 0.9978 -5.1409 6.4407 44 1 1.9565 -5.7326 5.0626 45 1 3.2401 -6.3216 7.3577 46 1 5.2882 -7.9071 9.4629 47 1 -2.2438 -3.8803 2.9653 48 1 -0.3498 -3.0360 0.6123 49 1 -1.9164 -3.9959 0.4523 50 1 -3.2043 -2.0653 1.4762 51 1 -1.6380 -1.1050 1.6365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733164634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:34 Heat of formation + Delta-G solvation = -23.592596 kcal Electronic energy + Delta-G solvation = -30434.842358 eV Core-core repulsion = 26370.461277 eV Total energy + Delta-G solvation = -4064.381081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.18370 -38.91799 -38.21687 -36.95351 -35.64133 -34.04157 -33.58885 -32.23428 -31.26823 -30.42401 -28.95658 -26.39365 -25.83914 -24.22971 -22.97667 -22.61088 -21.97597 -21.49432 -20.35825 -20.12062 -19.27491 -17.95626 -17.61449 -16.77699 -16.35285 -16.08670 -15.92277 -15.36348 -15.32146 -14.92559 -14.59320 -14.42260 -14.33803 -13.90071 -13.70551 -13.54363 -13.27775 -13.08116 -12.67460 -12.60464 -12.25620 -12.06019 -12.00181 -11.86843 -11.58359 -11.57354 -11.54129 -11.47017 -11.40347 -11.26912 -11.07433 -11.00758 -10.54410 -10.36339 -10.25442 -10.13313 -10.00583 -9.54671 -9.15286 -8.50640 -8.47577 -8.12601 -7.99013 -6.44511 -3.85338 2.36976 2.95061 3.14438 3.25306 3.32416 3.66160 3.79211 3.87328 3.99832 4.21947 4.27999 4.42430 4.59013 4.71224 4.76080 4.83171 4.88426 5.01034 5.05701 5.11853 5.18450 5.20933 5.26603 5.27744 5.31477 5.42397 5.51592 5.54046 5.57202 5.64513 5.69358 5.71571 5.76889 5.80694 5.88492 5.88686 5.92796 5.97079 6.01472 6.16932 6.22176 6.38027 6.57734 6.69857 7.10235 7.30680 7.52905 7.55762 8.03627 8.05664 8.58169 9.15253 9.51295 10.02471 10.73271 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.002542 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.934097 B =11013.571040 C =12743.015044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.509 5.509 3 C 0.038 3.962 4 C -0.127 4.127 5 C -0.129 4.129 6 C 0.052 3.948 7 H 0.101 0.899 8 C 0.510 3.490 9 O -0.533 6.533 10 N -0.715 5.715 11 C 0.178 3.822 12 H 0.101 0.899 13 C 0.054 3.946 14 N -0.666 5.666 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.281 1.281 27 C -0.166 4.166 28 C -0.178 4.178 29 C -0.188 4.188 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.399 0.601 40 H 0.087 0.913 41 H 0.034 0.966 42 H 0.347 0.653 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.111 0.889 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.087 0.913 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 8.331 -18.648 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 N -0.234 5.234 3 C -0.089 4.089 4 C -0.165 4.165 5 C -0.168 4.168 6 C -0.060 4.060 7 H 0.119 0.881 8 C 0.296 3.704 9 O -0.410 6.410 10 N -0.367 5.367 11 C 0.073 3.927 12 H 0.119 0.881 13 C -0.076 4.076 14 N -0.299 5.299 15 C -0.083 4.083 16 C 0.225 3.775 17 O -0.467 6.467 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.186 4.186 28 C -0.215 4.215 29 C -0.225 4.225 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.234 0.766 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.167 0.833 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.129 0.871 48 H 0.112 0.888 49 H 0.108 0.892 50 H 0.105 0.895 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.006 9.531 -18.288 23.376 hybrid contribution 0.769 -1.239 0.509 1.544 sum -10.237 8.292 -17.780 22.128 Atomic orbital electron populations 1.23189 0.87124 1.03116 1.01816 1.64056 1.09042 1.14813 1.35456 1.23151 0.95845 0.89315 1.00612 1.22700 0.97586 0.99519 0.96660 1.22750 0.99408 0.96358 0.98257 1.22629 0.94231 0.99440 0.89653 0.88118 1.20960 0.86781 0.82026 0.80593 1.90605 1.41903 1.51539 1.56936 1.46134 1.28712 1.10944 1.50903 1.20542 0.84313 0.97753 0.90071 0.88096 1.22226 0.94455 0.94976 0.95943 1.60014 1.06289 1.35094 1.28512 1.21692 0.97660 0.91629 0.97280 1.19788 0.86830 0.86265 0.84581 1.90529 1.66333 1.22539 1.67278 1.41868 1.23657 1.14180 1.40286 1.19750 1.00282 1.00661 1.22143 0.87868 1.25265 0.99759 0.95032 0.97892 1.69616 1.40619 1.04871 1.39189 0.85806 0.80900 0.78790 0.78889 1.19192 1.20722 1.20750 1.22710 1.00134 1.03270 0.92510 1.22947 1.01920 1.01697 0.94950 1.23447 0.99701 0.96041 1.03305 0.91613 0.92127 0.90957 0.89946 0.93030 0.90350 0.90374 0.90244 0.89537 0.76620 0.89453 0.94783 0.83305 0.89466 0.93818 0.77468 0.91901 0.87146 0.88832 0.89246 0.89474 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.05 7.67 60.06 0.46 0.41 16 2 N -0.51 -5.18 5.44 -232.95 -1.27 -6.44 16 3 C 0.04 0.35 6.73 -2.30 -0.02 0.33 16 4 C -0.13 -1.06 7.08 -24.59 -0.17 -1.24 16 5 C -0.13 -1.32 6.45 -24.91 -0.16 -1.48 16 6 C 0.05 0.53 3.84 -67.88 -0.26 0.27 16 7 H 0.10 0.90 7.96 -51.93 -0.41 0.49 16 8 C 0.51 5.91 3.88 -10.98 -0.04 5.87 16 9 O -0.53 -7.53 10.97 5.56 0.06 -7.47 16 10 N -0.72 -7.36 2.90 -53.80 -0.16 -7.52 16 11 C 0.18 1.95 2.74 -67.93 -0.19 1.77 16 12 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 13 C 0.05 0.61 5.28 -3.82 -0.02 0.59 16 14 N -0.67 -10.14 6.12 -115.05 -0.70 -10.84 16 15 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 16 C 0.44 10.17 7.82 -10.99 -0.09 10.08 16 17 O -0.58 -15.56 15.78 5.54 0.09 -15.47 16 18 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 19 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 23 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 C -0.17 -1.59 5.71 -90.62 -0.52 -2.11 16 28 C -0.18 -1.60 9.14 -26.73 -0.24 -1.85 16 29 C -0.19 -1.90 9.16 -26.73 -0.24 -2.14 16 30 H 0.07 0.80 5.74 -51.93 -0.30 0.50 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.76 3.72 -51.93 -0.19 0.57 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.49 7.63 -51.93 -0.40 0.10 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.96 7.73 -51.93 -0.40 0.55 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.40 3.51 8.02 -40.82 -0.33 3.19 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.35 5.38 7.28 -39.30 -0.29 5.10 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 46 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.11 0.94 8.11 -51.93 -0.42 0.52 16 48 H 0.09 0.87 5.82 -51.93 -0.30 0.57 16 49 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 50 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 51 H 0.12 1.44 3.63 -51.93 -0.19 1.25 16 LS Contribution 393.41 15.07 5.93 5.93 Total: -1.00 -31.82 393.41 -10.28 -42.09 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -8.10 Total: 18.17 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.76 Total: 3.40 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -1.46 Total: -62.51 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.15 Total: -22.94 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.82 -10.28 -42.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733164634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.502 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds