Wall clock time and date at job start Tue Mar 31 2020 22:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47846 * 110.99803 * 2 1 4 4 C 1.54906 * 104.79718 * 146.36186 * 3 2 1 5 5 C 1.55140 * 101.65106 * 322.93558 * 4 3 2 6 6 C 1.47437 * 111.00151 * 120.84281 * 2 1 3 7 7 H 1.09001 * 109.88856 * 117.17697 * 6 2 1 8 8 C 1.50706 * 109.88642 * 356.14953 * 6 2 1 9 9 O 1.21273 * 120.00336 * 309.05455 * 8 6 2 10 10 N 1.34780 * 119.99408 * 129.05461 * 8 6 2 11 11 C 1.46501 * 119.99276 * 179.97438 * 10 8 6 12 12 H 1.08998 * 109.47327 * 324.99533 * 11 10 8 13 13 C 1.53009 * 109.46888 * 205.00085 * 11 10 8 14 14 N 1.46905 * 109.46789 * 54.99899 * 13 11 10 15 15 C 1.46903 * 110.99519 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47092 * 180.02562 * 15 14 13 17 17 O 1.21298 * 119.99572 * 359.97438 * 16 15 14 18 18 N 1.34770 * 120.00206 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99971 * 179.97438 * 18 16 15 20 20 H 1.07990 * 120.00143 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99451 * 179.97438 * 19 18 16 22 22 N 1.31404 * 120.00397 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99550 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.47241 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47224 * 120.00193 * 23 21 19 26 26 H 1.48502 * 109.47203 * 240.00603 * 23 21 19 27 27 C 1.52997 * 109.47270 * 85.00322 * 11 10 8 28 28 C 1.53001 * 117.49509 * 8.61752 * 27 11 10 29 29 C 1.52998 * 59.99960 * 252.51029 * 28 27 11 30 30 H 1.08996 * 109.47605 * 308.83085 * 1 2 3 31 31 H 1.09001 * 109.47354 * 68.83674 * 1 2 3 32 32 H 1.09007 * 109.46865 * 188.83012 * 1 2 3 33 33 H 1.09002 * 110.37679 * 265.19552 * 3 2 1 34 34 H 1.09002 * 110.37176 * 27.42363 * 3 2 1 35 35 H 1.09002 * 110.98368 * 81.01987 * 4 3 2 36 36 H 1.09000 * 110.99052 * 204.83706 * 4 3 2 37 37 H 1.09004 * 110.70009 * 277.26559 * 5 4 3 38 38 H 1.09002 * 110.70250 * 154.03758 * 5 4 3 39 39 H 0.96998 * 120.00252 * 0.02562 * 10 8 6 40 40 H 1.08997 * 109.47014 * 175.00304 * 13 11 10 41 41 H 1.09000 * 109.46855 * 295.00315 * 13 11 10 42 42 H 1.00891 * 111.00460 * 303.95461 * 14 13 11 43 43 H 1.09006 * 109.47016 * 300.00078 * 15 14 13 44 44 H 1.08993 * 109.47198 * 60.00160 * 15 14 13 45 45 H 0.96998 * 119.99778 * 359.97438 * 18 16 15 46 46 H 0.97003 * 119.99940 * 179.97438 * 22 21 19 47 47 H 1.09003 * 115.55251 * 154.32432 * 27 11 10 48 48 H 1.08997 * 117.50020 * 0.02562 * 28 27 11 49 49 H 1.09008 * 117.49554 * 145.02027 * 28 27 11 50 50 H 1.09003 * 117.50071 * 252.51161 * 29 28 27 51 51 H 1.08998 * 117.51363 * 107.47954 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3046 1.3028 0.8296 5 6 2.9158 0.2822 1.9314 6 6 1.9974 -0.7057 1.1818 7 1 2.5674 -1.5800 0.8675 8 6 0.8611 -1.1291 2.0766 9 8 0.0223 -0.3213 2.4150 10 7 0.7771 -2.4057 2.5006 11 6 -0.3272 -2.8172 3.3709 12 1 -0.5840 -1.9990 4.0436 13 6 0.0970 -4.0375 4.1908 14 7 1.3348 -3.7309 4.9202 15 6 1.7735 -4.8825 5.7198 16 6 3.0426 -4.5311 6.4525 17 8 3.5336 -3.4298 6.3211 18 7 3.6326 -5.4408 7.2530 19 6 4.7874 -5.1212 7.9192 20 1 5.2241 -4.1404 7.8028 21 6 5.3953 -6.0590 8.7448 22 7 4.8636 -7.2523 8.8868 23 14 6.9684 -5.6234 9.6531 24 1 7.3584 -4.2281 9.3266 25 1 6.7452 -5.7450 11.1162 26 1 8.0521 -6.5504 9.2389 27 6 -1.5442 -3.1755 2.5157 28 6 -1.3468 -3.2451 1.0001 29 6 -2.1236 -2.0807 1.6177 30 1 -0.3634 0.6443 0.8005 31 1 -0.3634 0.3710 -0.9584 32 1 -0.3633 -1.0156 0.1578 33 1 2.2147 1.7039 -1.0182 34 1 1.2880 2.0595 0.4706 35 1 4.1301 0.9283 0.2242 36 1 3.5494 2.2721 1.2640 37 1 2.3743 0.7747 2.7391 38 1 3.8001 -0.2278 2.3136 39 1 1.4482 -3.0518 2.2302 40 1 -0.6904 -4.2896 4.9010 41 1 0.2683 -4.8820 3.5232 42 1 2.0623 -3.4317 4.2883 43 1 0.9978 -5.1409 6.4407 44 1 1.9565 -5.7326 5.0626 45 1 3.2401 -6.3216 7.3577 46 1 5.2882 -7.9071 9.4629 47 1 -2.2438 -3.8803 2.9653 48 1 -0.3498 -3.0360 0.6123 49 1 -1.9164 -3.9959 0.4523 50 1 -3.2043 -2.0653 1.4762 51 1 -1.6380 -1.1050 1.6365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733164634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:34 Heat of formation + Delta-G solvation = -48.219736 kcal Electronic energy + Delta-G solvation = -30435.910271 eV Core-core repulsion = 26370.461277 eV Total energy + Delta-G solvation = -4065.448994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05958 -40.19887 -39.57548 -37.86130 -36.77334 -35.87139 -34.70611 -33.26125 -33.02889 -31.40371 -29.90620 -27.91546 -26.65128 -25.89475 -23.90423 -23.41429 -22.88309 -22.24152 -21.34216 -21.00435 -20.90113 -19.90865 -18.55339 -17.91689 -17.52682 -17.07453 -16.97792 -16.64946 -16.35279 -16.16438 -15.94586 -15.75483 -15.28430 -15.19952 -15.12729 -14.56607 -14.43038 -14.11624 -13.88158 -13.55274 -13.43252 -13.34707 -13.08472 -12.98477 -12.89563 -12.80562 -12.66325 -12.40654 -12.35046 -12.26090 -12.22075 -12.11683 -12.02837 -11.77749 -11.51240 -11.31817 -10.98050 -10.85605 -10.35195 -10.03129 -10.01119 -9.33494 -9.31356 -8.46959 -5.95309 1.36431 1.42098 1.47121 1.55875 2.05773 2.09727 2.28804 2.79205 2.98932 3.00130 3.20791 3.45149 3.49325 3.66506 3.76347 3.83062 3.97624 4.07233 4.12624 4.25843 4.28740 4.30846 4.35617 4.41049 4.46948 4.50970 4.52702 4.59357 4.62457 4.73412 4.77288 4.82725 4.87681 4.93447 4.98060 5.00302 5.06310 5.09549 5.22039 5.24078 5.36843 5.41350 5.52310 5.77881 5.85794 5.89231 6.08238 6.36992 6.46465 6.60382 7.13128 7.18510 7.56910 8.12269 8.70628 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.002542 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.934097 B =11013.571040 C =12743.015044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.509 5.509 3 C 0.036 3.964 4 C -0.119 4.119 5 C -0.132 4.132 6 C 0.051 3.949 7 H 0.118 0.882 8 C 0.508 3.492 9 O -0.562 6.562 10 N -0.708 5.708 11 C 0.184 3.816 12 H 0.068 0.932 13 C 0.061 3.939 14 N -0.685 5.685 15 C 0.065 3.935 16 C 0.437 3.563 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.274 1.274 25 H -0.272 1.272 26 H -0.270 1.270 27 C -0.164 4.164 28 C -0.164 4.164 29 C -0.201 4.201 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.408 0.592 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.343 0.657 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.397 0.603 46 H 0.277 0.723 47 H 0.127 0.873 48 H 0.090 0.910 49 H 0.105 0.895 50 H 0.095 0.905 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.673 6.983 -19.777 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 N -0.234 5.234 3 C -0.092 4.092 4 C -0.157 4.157 5 C -0.171 4.171 6 C -0.060 4.060 7 H 0.135 0.865 8 C 0.295 3.705 9 O -0.441 6.441 10 N -0.360 5.360 11 C 0.079 3.921 12 H 0.086 0.914 13 C -0.068 4.068 14 N -0.318 5.318 15 C -0.067 4.067 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.195 1.195 27 C -0.184 4.184 28 C -0.201 4.201 29 C -0.237 4.237 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.245 0.755 40 H 0.115 0.885 41 H 0.077 0.923 42 H 0.163 0.837 43 H 0.123 0.877 44 H 0.091 0.909 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.145 0.855 48 H 0.108 0.892 49 H 0.123 0.877 50 H 0.114 0.886 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.069 8.145 -19.428 23.798 hybrid contribution 0.734 -0.768 0.843 1.356 sum -10.335 7.377 -18.586 22.509 Atomic orbital electron populations 1.23078 0.87381 1.02585 1.01469 1.64147 1.08745 1.15440 1.35065 1.23232 0.95784 0.88567 1.01579 1.22706 0.97646 0.99430 0.95937 1.22740 0.99194 0.96910 0.98233 1.22728 0.93774 1.00003 0.89494 0.86459 1.21230 0.86730 0.82072 0.80515 1.90607 1.43028 1.52382 1.58064 1.46077 1.28779 1.10812 1.50357 1.20383 0.85160 0.96583 0.89991 0.91395 1.22260 0.92726 0.95596 0.96227 1.59980 1.07426 1.34952 1.29427 1.21547 0.94494 0.92926 0.97741 1.20917 0.88014 0.85147 0.83484 1.90501 1.67925 1.24255 1.68328 1.41931 1.23440 1.14778 1.40882 1.19678 1.02074 1.00222 1.24183 0.90436 1.26009 1.02403 0.94781 0.98021 1.69668 1.41665 1.05339 1.39439 0.84902 0.77448 0.78263 0.77923 1.19841 1.19757 1.19480 1.22687 0.99602 1.03318 0.92758 1.22964 1.01670 1.01061 0.94371 1.23406 1.00220 0.95599 1.04508 0.93803 0.91092 0.91084 0.88268 0.94125 0.88975 0.89548 0.92790 0.89249 0.75550 0.88459 0.92317 0.83729 0.87715 0.90930 0.76930 0.91307 0.85498 0.89185 0.87651 0.88625 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 7.67 127.69 0.98 1.04 16 2 N -0.51 -10.02 5.44 -890.92 -4.85 -14.87 16 3 C 0.04 0.62 6.73 86.77 0.58 1.20 16 4 C -0.12 -1.90 7.08 31.98 0.23 -1.67 16 5 C -0.13 -2.72 6.45 31.77 0.21 -2.52 16 6 C 0.05 1.03 3.84 44.51 0.17 1.20 16 7 H 0.12 1.95 7.96 -2.39 -0.02 1.93 16 8 C 0.51 11.92 3.88 87.66 0.34 12.26 16 9 O -0.56 -16.63 10.97 -3.01 -0.03 -16.66 16 10 N -0.71 -14.18 2.90 -442.52 -1.28 -15.47 16 11 C 0.18 3.88 2.74 44.99 0.12 4.00 16 12 H 0.07 1.92 7.58 -2.39 -0.02 1.90 16 13 C 0.06 1.23 5.28 86.31 0.46 1.68 16 14 N -0.68 -19.95 6.12 -517.90 -3.17 -23.12 16 15 C 0.07 2.07 6.17 85.56 0.53 2.60 16 16 C 0.44 20.19 7.82 87.66 0.69 20.87 16 17 O -0.62 -33.98 15.78 -3.08 -0.05 -34.03 16 18 N -0.57 -28.78 5.29 -306.99 -1.62 -30.40 16 19 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 20 H 0.08 4.68 7.16 -2.92 -0.02 4.66 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 23 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 C -0.16 -2.86 5.71 -10.79 -0.06 -2.92 16 28 C -0.16 -2.61 9.14 30.59 0.28 -2.33 16 29 C -0.20 -3.89 9.16 30.59 0.28 -3.61 16 30 H 0.04 1.12 5.74 -2.39 -0.01 1.11 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.48 3.72 -2.38 -0.01 1.47 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 0.79 7.63 -2.39 -0.02 0.77 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.38 7.73 -2.38 -0.02 1.36 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.41 6.65 8.02 -92.71 -0.74 5.91 16 40 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.34 10.38 7.28 -89.70 -0.65 9.73 16 43 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.40 18.83 7.90 -92.71 -0.73 18.09 16 46 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 47 H 0.13 1.82 8.11 -2.39 -0.02 1.80 16 48 H 0.09 1.51 5.82 -2.39 -0.01 1.50 16 49 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 50 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.10 2.46 3.63 -2.39 -0.01 2.45 16 Total: -1.00 -70.11 393.41 -3.77 -73.88 By element: Atomic # 1 Polarization: 52.20 SS G_CDS: -1.15 Total: 51.05 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 6.08 Total: 13.77 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -10.64 Total: -132.61 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.08 Total: -50.69 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -70.11 -3.77 -73.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733164634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.657 kcal (2) G-P(sol) polarization free energy of solvation -70.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds