Wall clock time and date at job start Tue Mar 31 2020 21:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47220 * 2 1 4 4 N 1.46500 * 109.47417 * 239.99964 * 2 1 3 5 5 C 1.34773 * 120.00309 * 85.00124 * 4 2 1 6 6 N 1.34776 * 119.99897 * 180.02562 * 5 4 2 7 7 O 1.21591 * 119.99776 * 359.97438 * 5 4 2 8 8 C 1.50699 * 109.47045 * 119.99513 * 2 1 3 9 9 O 1.21278 * 120.00051 * 110.19323 * 8 2 1 10 10 N 1.34782 * 119.99916 * 290.18820 * 8 2 1 11 11 C 1.46933 * 120.62654 * 176.83513 * 10 8 2 12 12 C 1.53190 * 108.77474 * 126.41425 * 11 10 8 13 13 C 1.53046 * 109.31250 * 54.63426 * 12 11 10 14 14 N 1.46500 * 109.46037 * 178.62946 * 13 12 11 15 15 C 1.36937 * 119.99998 * 59.99798 * 14 13 12 16 16 H 1.07997 * 120.00410 * 17.46358 * 15 14 13 17 17 C 1.38811 * 119.99695 * 197.47112 * 15 14 13 18 18 N 1.31617 * 120.00120 * 21.20966 * 17 15 14 19 19 Si 1.86805 * 119.99891 * 201.21686 * 17 15 14 20 20 H 1.48496 * 109.47236 * 89.99375 * 19 17 15 21 21 H 1.48502 * 109.47052 * 209.99796 * 19 17 15 22 22 H 1.48501 * 109.46898 * 329.99553 * 19 17 15 23 23 C 1.46500 * 119.99780 * 240.00085 * 14 13 12 24 24 C 1.52994 * 109.47102 * 86.37682 * 23 14 13 25 25 C 1.53005 * 117.49662 * 243.61844 * 24 23 14 26 26 C 1.53000 * 117.49466 * 174.99947 * 24 23 14 27 27 C 1.53040 * 109.53520 * 298.63295 * 13 12 11 28 28 C 1.46921 * 120.63282 * 356.85868 * 10 8 2 29 29 H 1.08995 * 109.47358 * 304.74377 * 1 2 3 30 30 H 1.09001 * 109.46648 * 64.74418 * 1 2 3 31 31 H 1.08999 * 109.46808 * 184.74093 * 1 2 3 32 32 H 0.97002 * 119.99265 * 264.99610 * 4 2 1 33 33 H 0.96995 * 120.00165 * 359.97438 * 6 5 4 34 34 H 0.97001 * 119.99628 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.58616 * 6.62357 * 11 10 8 36 36 H 1.09001 * 109.58233 * 246.20316 * 11 10 8 37 37 H 1.09000 * 109.49768 * 174.58042 * 12 11 10 38 38 H 1.09002 * 109.49612 * 294.68184 * 12 11 10 39 39 H 1.08996 * 109.46153 * 58.65040 * 13 12 11 40 40 H 0.97006 * 119.99598 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.46812 * 206.38142 * 23 14 13 42 42 H 1.09001 * 109.46784 * 326.37247 * 23 14 13 43 43 H 1.08999 * 115.55343 * 29.33414 * 24 23 14 44 44 H 1.09000 * 117.50029 * 0.02562 * 25 24 23 45 45 H 1.08999 * 117.49301 * 145.02676 * 25 24 23 46 46 H 1.09000 * 117.49689 * 214.97905 * 26 24 23 47 47 H 1.09004 * 117.50325 * 0.02562 * 26 24 23 48 48 H 1.09005 * 109.49893 * 181.31757 * 27 13 12 49 49 H 1.08995 * 109.50327 * 301.41538 * 27 13 12 50 50 H 1.08993 * 109.58579 * 113.79430 * 28 10 8 51 51 H 1.09002 * 109.70082 * 353.44198 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 7 2.5960 -0.6539 -3.4576 7 8 1.8576 1.1613 -2.4119 8 6 2.0323 -0.7103 1.2305 9 8 2.5763 -1.7894 1.1282 10 7 1.8771 -0.1462 2.4448 11 6 2.2990 -0.8569 3.6597 12 6 3.2394 0.0499 4.4598 13 6 2.5479 1.3896 4.7233 14 7 3.4319 2.2474 5.5165 15 6 4.6619 2.6000 5.0289 16 1 4.8755 2.4957 3.9754 17 6 5.6345 3.0913 5.8889 18 7 5.5592 2.8416 7.1790 19 14 7.0502 4.1070 5.2152 20 1 6.6743 5.5436 5.2188 21 1 8.2512 3.9073 6.0654 22 1 7.3503 3.6774 3.8257 23 6 2.9997 2.7278 6.8312 24 6 3.3486 1.6852 7.8952 25 6 2.1896 1.0304 8.6494 26 6 3.0831 2.0513 9.3568 27 6 2.2344 2.0744 3.3910 28 6 1.2825 1.1906 2.5787 29 1 -0.3634 0.5856 0.8444 30 1 -0.3633 0.4385 -0.9295 31 1 -0.3633 -1.0242 0.0849 32 1 2.2492 -1.6318 -1.1524 33 1 2.8267 -1.5950 -3.4140 34 1 2.6884 -0.1701 -4.2933 35 1 2.8214 -1.7731 3.3843 36 1 1.4244 -1.0998 4.2631 37 1 3.4834 -0.4265 5.4094 38 1 4.1538 0.2181 3.8909 39 1 1.6210 1.2184 5.2706 40 1 6.2387 3.1853 7.7799 41 1 3.5073 3.6648 7.0604 42 1 1.9221 2.8912 6.8221 43 1 4.2222 1.0694 7.6813 44 1 1.1785 1.3422 8.3874 45 1 2.3005 -0.0165 8.9318 46 1 3.7817 1.6760 10.1045 47 1 2.6594 3.0348 9.5604 48 1 1.7631 3.0390 3.5798 49 1 3.1582 2.2235 2.8322 50 1 0.3251 1.1146 3.0940 51 1 1.1324 1.6266 1.5911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733278214.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:14 Heat of formation + Delta-G solvation = -10.608097 kcal Electronic energy + Delta-G solvation = -31021.492468 eV Core-core repulsion = 26957.674437 eV Total energy + Delta-G solvation = -4063.818031 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.69372 -39.55391 -37.77621 -36.46685 -35.12277 -34.57112 -33.89803 -32.22060 -31.10264 -30.13491 -29.54147 -26.21750 -25.46467 -24.15260 -22.85605 -22.14561 -21.46902 -21.13905 -20.07072 -19.45758 -19.15964 -18.52868 -17.52580 -16.81062 -16.25087 -15.84298 -15.66787 -15.28861 -14.97324 -14.72631 -14.39271 -14.30507 -13.83044 -13.67833 -13.60954 -13.53387 -13.31391 -12.96501 -12.65555 -12.41346 -12.22002 -11.88769 -11.77279 -11.58598 -11.30905 -10.88217 -10.82897 -10.77738 -10.64837 -10.62816 -10.49630 -10.28309 -10.05058 -9.94457 -9.91644 -9.72485 -9.64804 -9.26046 -9.14798 -8.73848 -8.49115 -8.36206 -6.82046 -5.73639 -3.13622 2.47028 2.60005 3.02494 3.18825 3.39334 3.47352 3.48377 4.26563 4.34161 4.48579 4.89504 4.93012 4.95492 5.09135 5.15074 5.31225 5.40716 5.43415 5.48484 5.57893 5.61690 5.76220 5.79928 5.91622 5.93684 6.00948 6.02428 6.08607 6.20231 6.23198 6.34586 6.37723 6.41567 6.50010 6.58372 6.59837 6.69251 6.69640 6.73634 6.92316 7.01144 7.07213 7.29371 7.44495 7.48539 7.76139 7.77513 7.89671 8.11078 8.36864 8.42860 9.23171 9.86426 10.33026 11.28859 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013487 B = 0.003139 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.547563 B = 8918.384977 C =10175.321713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 H 0.114 0.886 4 N -0.728 5.728 5 C 0.709 3.291 6 N -0.867 5.867 7 O -0.595 6.595 8 C 0.513 3.487 9 O -0.549 6.549 10 N -0.595 5.595 11 C 0.112 3.888 12 C -0.137 4.137 13 C 0.182 3.818 14 N -0.588 5.588 15 C -0.251 4.251 16 H 0.070 0.930 17 C 0.004 3.996 18 N -0.891 5.891 19 Si 0.893 3.107 20 H -0.290 1.290 21 H -0.294 1.294 22 H -0.282 1.282 23 C 0.208 3.792 24 C -0.076 4.076 25 C -0.227 4.227 26 C -0.185 4.185 27 C -0.144 4.144 28 C 0.102 3.898 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.406 0.594 33 H 0.398 0.602 34 H 0.415 0.585 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.251 0.749 41 H 0.073 0.927 42 H 0.010 0.990 43 H 0.116 0.884 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.887 -7.612 -11.615 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 H 0.132 0.868 4 N -0.386 5.386 5 C 0.407 3.593 6 N -0.435 5.435 7 O -0.473 6.473 8 C 0.300 3.700 9 O -0.427 6.427 10 N -0.328 5.328 11 C -0.010 4.010 12 C -0.177 4.177 13 C 0.073 3.927 14 N -0.307 5.307 15 C -0.380 4.380 16 H 0.088 0.912 17 C -0.194 4.194 18 N -0.535 5.535 19 Si 0.723 3.277 20 H -0.217 1.217 21 H -0.221 1.221 22 H -0.208 1.208 23 C 0.083 3.917 24 C -0.097 4.097 25 C -0.264 4.264 26 C -0.223 4.223 27 C -0.184 4.184 28 C -0.021 4.021 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.242 0.758 33 H 0.225 0.775 34 H 0.247 0.753 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.028 0.972 43 H 0.134 0.866 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.754 -7.106 -11.378 17.193 hybrid contribution 1.247 -0.148 -0.341 1.301 sum -9.508 -7.253 -11.719 16.743 Atomic orbital electron populations 1.22195 0.92856 1.03002 1.03849 1.20606 0.95501 0.97874 0.82699 0.86799 1.44801 1.71304 1.14461 1.08009 1.15868 0.78000 0.84848 0.80595 1.42932 1.73573 1.14976 1.11999 1.90979 1.57368 1.14246 1.84696 1.20454 0.79005 0.85862 0.84701 1.90649 1.43962 1.22112 1.85980 1.48063 1.60557 1.18233 1.05921 1.21780 0.98623 0.96249 0.84359 1.22373 0.98852 0.96767 0.99673 1.20196 0.92921 0.88947 0.90606 1.44138 1.15326 1.54709 1.16522 1.19075 0.89218 1.37407 0.92316 0.91248 1.24794 0.97291 1.01715 0.95641 1.70180 1.35285 1.45941 1.02110 0.86437 0.82090 0.81034 0.78113 1.21696 1.22062 1.20805 1.20191 0.92703 0.95921 0.82923 1.23097 0.95629 1.00105 0.90853 1.23117 0.96447 0.96935 1.09943 1.22594 1.02971 0.98140 0.98616 1.22424 0.99235 0.98395 0.98359 1.22026 0.96890 0.81901 1.01326 0.90464 0.90774 0.91949 0.75780 0.77465 0.75317 0.89673 0.91802 0.90931 0.91299 0.92866 0.93853 0.90867 0.97151 0.86600 0.90744 0.90961 0.90725 0.90674 0.90900 0.91190 0.91189 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.17 37.16 0.34 -1.20 16 2 C 0.14 1.69 2.13 -69.08 -0.15 1.55 16 3 H 0.11 1.48 6.45 -51.93 -0.33 1.15 16 4 N -0.73 -8.08 5.01 -59.81 -0.30 -8.38 16 5 C 0.71 8.37 8.80 -86.92 -0.77 7.61 16 6 N -0.87 -6.30 8.88 27.63 0.25 -6.05 16 7 O -0.59 -9.42 16.84 5.29 0.09 -9.33 16 8 C 0.51 7.15 7.04 -10.98 -0.08 7.07 16 9 O -0.55 -8.98 15.24 5.56 0.08 -8.89 16 10 N -0.60 -8.08 2.97 -172.77 -0.51 -8.59 16 11 C 0.11 1.63 6.44 -3.71 -0.02 1.60 16 12 C -0.14 -2.38 5.31 -26.61 -0.14 -2.53 16 13 C 0.18 3.24 2.59 -67.89 -0.18 3.06 16 14 N -0.59 -12.92 2.47 -165.62 -0.41 -13.32 16 15 C -0.25 -6.24 8.41 -15.06 -0.13 -6.37 16 16 H 0.07 1.76 6.92 -52.49 -0.36 1.40 16 17 C 0.00 0.10 4.88 -17.43 -0.09 0.02 16 18 N -0.89 -23.51 8.80 55.49 0.49 -23.03 16 19 Si 0.89 21.15 29.60 -169.99 -5.03 16.12 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.21 4.56 5.12 -4.04 -0.02 4.54 16 24 C -0.08 -1.61 4.34 -90.62 -0.39 -2.01 16 25 C -0.23 -4.06 10.18 -26.73 -0.27 -4.33 16 26 C -0.19 -3.53 10.25 -26.73 -0.27 -3.81 16 27 C -0.14 -2.25 5.31 -26.61 -0.14 -2.39 16 28 C 0.10 1.23 5.17 -3.71 -0.02 1.21 16 29 H 0.08 0.65 6.21 -51.93 -0.32 0.33 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.41 4.05 7.73 -40.82 -0.32 3.74 16 33 H 0.40 1.78 8.84 -40.82 -0.36 1.42 16 34 H 0.41 2.51 8.93 -40.82 -0.36 2.14 16 35 H 0.08 1.31 7.00 -51.93 -0.36 0.94 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.07 1.39 7.70 -51.93 -0.40 0.99 16 39 H 0.05 0.90 7.84 -51.93 -0.41 0.50 16 40 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 41 H 0.07 1.82 6.58 -51.93 -0.34 1.48 16 42 H 0.01 0.21 7.73 -51.93 -0.40 -0.19 16 43 H 0.12 2.88 7.17 -51.93 -0.37 2.51 16 44 H 0.07 1.24 8.03 -51.93 -0.42 0.83 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.07 1.26 7.07 -51.93 -0.37 0.89 16 50 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.08 0.86 4.95 -51.93 -0.26 0.60 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -30.48 397.00 -10.01 -40.50 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -8.33 Total: 10.98 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -2.32 Total: 4.02 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.49 Total: -59.37 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.17 Total: -18.23 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.48 -10.01 -40.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733278214.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.890 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds