Wall clock time and date at job start Tue Mar 31 2020 22:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47848 * 110.99678 * 2 1 4 4 C 1.54912 * 104.79519 * 146.36664 * 3 2 1 5 5 C 1.55137 * 101.65014 * 322.92795 * 4 3 2 6 6 C 1.47433 * 111.00287 * 120.84047 * 2 1 3 7 7 H 1.09001 * 109.89070 * 117.16996 * 6 2 1 8 8 C 1.50703 * 109.88874 * 356.15005 * 6 2 1 9 9 O 1.21282 * 120.00220 * 308.67528 * 8 6 2 10 10 N 1.34784 * 120.00013 * 128.67426 * 8 6 2 11 11 C 1.46493 * 119.99809 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47236 * 174.95598 * 11 10 8 13 13 N 1.46898 * 112.84728 * 309.89023 * 12 11 10 14 14 C 1.46908 * 111.00177 * 301.02887 * 13 12 11 15 15 C 1.50695 * 109.47059 * 175.69714 * 14 13 12 16 16 O 1.21291 * 120.00197 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99609 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99901 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99680 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00213 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99585 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00170 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46770 * 90.00160 * 22 20 18 24 24 H 1.48496 * 109.47338 * 209.99924 * 22 20 18 25 25 H 1.48497 * 109.47251 * 330.00305 * 22 20 18 26 26 C 1.53775 * 113.61458 * 81.08706 * 12 11 10 27 27 C 1.53949 * 87.02275 * 89.22918 * 26 12 11 28 28 C 1.53777 * 113.61533 * 178.69642 * 12 11 10 29 29 H 1.09002 * 109.46895 * 309.11749 * 1 2 3 30 30 H 1.08996 * 109.47493 * 69.11688 * 1 2 3 31 31 H 1.08994 * 109.47085 * 189.12012 * 1 2 3 32 32 H 1.09004 * 110.37163 * 265.19498 * 3 2 1 33 33 H 1.08998 * 110.37943 * 27.53385 * 3 2 1 34 34 H 1.09004 * 110.98665 * 81.02131 * 4 3 2 35 35 H 1.08995 * 110.98899 * 204.79693 * 4 3 2 36 36 H 1.09001 * 110.70627 * 277.26578 * 5 4 3 37 37 H 1.09000 * 110.70150 * 154.03545 * 5 4 3 38 38 H 0.97000 * 120.00055 * 359.97438 * 10 8 6 39 39 H 1.09006 * 109.47319 * 54.95483 * 11 10 8 40 40 H 1.08999 * 109.47868 * 294.95777 * 11 10 8 41 41 H 1.00900 * 110.99951 * 177.07459 * 13 12 11 42 42 H 1.09002 * 109.47042 * 55.69721 * 14 13 12 43 43 H 1.08998 * 109.46616 * 295.69633 * 14 13 12 44 44 H 0.96995 * 120.00666 * 0.02562 * 17 15 14 45 45 H 0.97003 * 119.99855 * 180.02562 * 21 20 18 46 46 H 1.09001 * 113.61440 * 203.75773 * 26 12 11 47 47 H 1.09000 * 113.61134 * 334.64800 * 26 12 11 48 48 H 1.08991 * 113.53982 * 270.81335 * 27 26 12 49 49 H 1.09000 * 113.66596 * 139.93024 * 27 26 12 50 50 H 1.08998 * 113.62041 * 25.34566 * 28 12 11 51 51 H 1.09002 * 113.61398 * 156.25065 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9159 0.2823 1.9314 6 6 1.9974 -0.7056 1.1818 7 1 2.5673 -1.5800 0.8675 8 6 0.8612 -1.1291 2.0766 9 8 0.0261 -0.3196 2.4207 10 7 0.7729 -2.4074 2.4945 11 6 -0.3313 -2.8189 3.3648 12 6 -0.2689 -4.3313 3.5875 13 7 -0.1410 -5.0875 2.3346 14 6 -1.2712 -4.8141 1.4368 15 6 -1.0530 -5.5220 0.1245 16 8 -0.0540 -6.1883 -0.0464 17 7 -1.9674 -5.4138 -0.8597 18 6 -1.7687 -6.0574 -2.0538 19 1 -0.8796 -6.6514 -2.2056 20 6 -2.7112 -5.9455 -3.0687 21 7 -3.7927 -5.2223 -2.8840 22 14 -2.4400 -6.8218 -4.6959 23 1 -3.0357 -8.1806 -4.6315 24 1 -3.0857 -6.0496 -5.7877 25 1 -0.9833 -6.9320 -4.9621 26 6 0.7406 -4.7538 4.6678 27 6 -0.4049 -4.5998 5.6847 28 6 -1.3717 -4.8631 4.5180 29 1 -0.3633 0.6484 0.7973 30 1 -0.3634 0.3663 -0.9601 31 1 -0.3633 -1.0146 0.1629 32 1 2.2146 1.7039 -1.0183 33 1 1.2889 2.0593 0.4723 34 1 4.1302 0.9283 0.2241 35 1 3.5498 2.2722 1.2633 36 1 2.3745 0.7748 2.7392 37 1 3.8001 -0.2278 2.3136 38 1 1.4405 -3.0550 2.2190 39 1 -1.2802 -2.5596 2.8951 40 1 -0.2487 -2.3068 4.3235 41 1 -0.0545 -6.0763 2.5162 42 1 -1.3454 -3.7406 1.2627 43 1 -2.1934 -5.1726 1.8942 44 1 -2.7658 -4.8800 -0.7235 45 1 -4.4509 -5.1444 -3.5924 46 1 1.0930 -5.7795 4.5589 47 1 1.5515 -4.0396 4.8107 48 1 -0.4858 -3.5956 6.1005 49 1 -0.4199 -5.3777 6.4481 50 1 -2.2637 -4.2370 4.5403 51 1 -1.5980 -5.9187 4.3681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733713237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:33 Heat of formation + Delta-G solvation = -34.456706 kcal Electronic energy + Delta-G solvation = -30917.477803 eV Core-core repulsion = 26852.625620 eV Total energy + Delta-G solvation = -4064.852184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.82856 -39.89548 -37.99982 -37.53203 -34.42734 -34.06717 -33.16792 -32.12465 -31.17996 -29.97755 -27.55313 -26.66575 -25.81300 -25.53216 -24.28805 -22.65995 -21.87552 -21.40341 -20.03619 -19.21462 -18.75670 -17.86355 -17.30914 -16.86246 -16.20844 -15.74760 -15.54791 -15.45118 -14.99047 -14.84033 -14.50354 -14.47132 -14.04351 -14.00218 -13.57171 -13.44723 -13.37952 -12.99127 -12.73692 -12.56590 -12.39909 -12.19399 -11.96608 -11.94285 -11.54389 -11.51981 -11.37189 -11.30964 -11.20591 -11.10090 -10.97529 -10.96863 -10.73861 -10.40983 -10.37321 -10.19336 -9.96814 -9.48960 -9.02518 -8.48981 -8.24548 -8.05682 -7.94191 -6.39707 -3.80516 2.54605 3.14243 3.19183 3.27944 3.33994 3.92018 3.98165 4.04928 4.27036 4.37589 4.40360 4.47690 4.51208 4.52601 4.67157 4.77887 4.97918 5.09598 5.20828 5.25924 5.29780 5.30884 5.43764 5.50531 5.54708 5.56901 5.58687 5.60640 5.63703 5.67326 5.74612 5.74781 5.77967 5.88003 5.91482 5.97650 6.00321 6.03236 6.13479 6.17466 6.27980 6.50128 6.81194 6.91971 7.15121 7.56002 7.56900 7.59246 8.07769 8.23763 8.62716 9.19692 9.56075 10.07214 10.77990 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008028 B = 0.003836 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.955017 B = 7297.284575 C = 9940.485777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.507 5.507 3 C 0.038 3.962 4 C -0.127 4.127 5 C -0.127 4.127 6 C 0.053 3.947 7 H 0.104 0.896 8 C 0.503 3.497 9 O -0.548 6.548 10 N -0.707 5.707 11 C 0.150 3.850 12 C 0.081 3.919 13 N -0.650 5.650 14 C 0.051 3.949 15 C 0.442 3.558 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.269 1.269 26 C -0.126 4.126 27 C -0.140 4.140 28 C -0.168 4.168 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.413 0.587 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.354 0.646 42 H 0.083 0.917 43 H 0.044 0.956 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.087 0.913 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.240 9.781 15.004 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.232 5.232 3 C -0.089 4.089 4 C -0.165 4.165 5 C -0.166 4.166 6 C -0.058 4.058 7 H 0.121 0.879 8 C 0.289 3.711 9 O -0.426 6.426 10 N -0.359 5.359 11 C 0.025 3.975 12 C -0.012 4.012 13 N -0.282 5.282 14 C -0.081 4.081 15 C 0.227 3.773 16 O -0.467 6.467 17 N -0.199 5.199 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.756 3.244 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.164 4.164 27 C -0.178 4.178 28 C -0.208 4.208 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.249 0.751 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.174 0.826 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.090 0.910 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.710 10.127 14.213 19.971 hybrid contribution -1.385 -0.630 0.180 1.532 sum 8.325 9.496 14.393 19.148 Atomic orbital electron populations 1.22939 0.86560 1.02717 1.01852 1.64024 1.09424 1.14384 1.35332 1.23160 0.95527 0.89585 1.00671 1.22696 0.97922 0.99153 0.96685 1.22729 0.99007 0.96525 0.98317 1.22625 0.94220 0.99338 0.89624 0.87854 1.21032 0.87149 0.82225 0.80722 1.90653 1.42521 1.52000 1.57444 1.45916 1.29144 1.10533 1.50315 1.21024 0.90789 0.91347 0.94315 1.22549 0.96556 0.93369 0.88722 1.59871 1.43219 1.13442 1.11638 1.21639 0.92026 1.01113 0.93351 1.19769 0.85525 0.86362 0.85643 1.90518 1.29466 1.44755 1.81970 1.41858 1.20424 1.44992 1.12653 1.19688 1.06834 1.26761 0.89550 0.87952 1.25252 0.95273 0.97463 0.99879 1.69615 1.10050 1.39831 1.34754 0.85871 0.78744 0.78869 0.80895 1.20473 1.20918 1.19372 1.23092 0.96646 1.02377 0.94249 1.22793 0.96562 1.01941 0.96490 1.23662 0.98078 1.01913 0.97126 0.91926 0.91725 0.91666 0.89842 0.93151 0.90302 0.90582 0.90645 0.90109 0.75078 0.91183 0.91188 0.82591 0.89836 0.93836 0.77566 0.91891 0.89403 0.90991 0.90124 0.91231 0.91165 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 8.18 60.06 0.49 0.60 16 2 N -0.51 -6.90 5.44 -232.95 -1.27 -8.17 16 3 C 0.04 0.42 6.73 -2.29 -0.02 0.40 16 4 C -0.13 -1.11 7.08 -24.59 -0.17 -1.29 16 5 C -0.13 -1.23 6.45 -24.91 -0.16 -1.39 16 6 C 0.05 0.66 3.84 -67.88 -0.26 0.39 16 7 H 0.10 1.22 7.96 -51.93 -0.41 0.81 16 8 C 0.50 6.90 4.95 -10.98 -0.05 6.85 16 9 O -0.55 -8.91 13.72 5.56 0.08 -8.83 16 10 N -0.71 -8.84 5.39 -60.29 -0.33 -9.17 16 11 C 0.15 1.80 4.30 -4.04 -0.02 1.78 16 12 C 0.08 0.90 0.74 -130.79 -0.10 0.80 16 13 N -0.65 -9.42 5.42 -100.40 -0.54 -9.96 16 14 C 0.05 0.88 5.77 -4.97 -0.03 0.85 16 15 C 0.44 10.27 7.83 -10.99 -0.09 10.19 16 16 O -0.58 -15.45 15.87 5.55 0.09 -15.36 16 17 N -0.56 -14.31 5.29 -10.96 -0.06 -14.36 16 18 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 19 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 22 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 C -0.13 -1.16 7.39 -25.83 -0.19 -1.35 16 27 C -0.14 -1.17 7.74 -25.83 -0.20 -1.37 16 28 C -0.17 -1.67 6.91 -25.92 -0.18 -1.85 16 29 H 0.06 0.98 5.80 -51.93 -0.30 0.68 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.10 6.93 -51.93 -0.36 0.74 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.56 7.62 -51.93 -0.40 0.17 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.80 7.73 -51.93 -0.40 0.40 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.41 5.08 8.03 -40.82 -0.33 4.75 16 39 H 0.07 0.96 7.15 -51.93 -0.37 0.59 16 40 H 0.07 0.79 7.34 -51.93 -0.38 0.40 16 41 H 0.35 5.29 8.50 -39.29 -0.33 4.95 16 42 H 0.08 1.44 6.58 -51.93 -0.34 1.10 16 43 H 0.04 0.70 7.84 -51.93 -0.41 0.29 16 44 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 45 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 46 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 47 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 48 H 0.08 0.64 7.64 -51.93 -0.40 0.24 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 51 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 401.92 15.07 6.06 6.06 Total: -1.00 -31.87 401.92 -9.97 -41.84 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -8.48 Total: 19.16 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.21 Total: 6.63 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -1.47 Total: -65.71 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.16 Total: -24.19 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.87 -9.97 -41.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733713237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.388 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds