Wall clock time and date at job start Tue Mar 31 2020 22:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47848 * 110.99678 * 2 1 4 4 C 1.54912 * 104.79519 * 146.36664 * 3 2 1 5 5 C 1.55137 * 101.65014 * 322.92795 * 4 3 2 6 6 C 1.47433 * 111.00287 * 120.84047 * 2 1 3 7 7 H 1.09001 * 109.89070 * 117.16996 * 6 2 1 8 8 C 1.50703 * 109.88874 * 356.15005 * 6 2 1 9 9 O 1.21282 * 120.00220 * 308.67528 * 8 6 2 10 10 N 1.34784 * 120.00013 * 128.67426 * 8 6 2 11 11 C 1.46493 * 119.99809 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.47236 * 174.95598 * 11 10 8 13 13 N 1.46898 * 112.84728 * 309.89023 * 12 11 10 14 14 C 1.46908 * 111.00177 * 301.02887 * 13 12 11 15 15 C 1.50695 * 109.47059 * 175.69714 * 14 13 12 16 16 O 1.21291 * 120.00197 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99609 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99901 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99680 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00213 * 180.02562 * 18 17 15 21 21 N 1.31411 * 119.99585 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00170 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46770 * 90.00160 * 22 20 18 24 24 H 1.48496 * 109.47338 * 209.99924 * 22 20 18 25 25 H 1.48497 * 109.47251 * 330.00305 * 22 20 18 26 26 C 1.53775 * 113.61458 * 81.08706 * 12 11 10 27 27 C 1.53949 * 87.02275 * 89.22918 * 26 12 11 28 28 C 1.53777 * 113.61533 * 178.69642 * 12 11 10 29 29 H 1.09002 * 109.46895 * 309.11749 * 1 2 3 30 30 H 1.08996 * 109.47493 * 69.11688 * 1 2 3 31 31 H 1.08994 * 109.47085 * 189.12012 * 1 2 3 32 32 H 1.09004 * 110.37163 * 265.19498 * 3 2 1 33 33 H 1.08998 * 110.37943 * 27.53385 * 3 2 1 34 34 H 1.09004 * 110.98665 * 81.02131 * 4 3 2 35 35 H 1.08995 * 110.98899 * 204.79693 * 4 3 2 36 36 H 1.09001 * 110.70627 * 277.26578 * 5 4 3 37 37 H 1.09000 * 110.70150 * 154.03545 * 5 4 3 38 38 H 0.97000 * 120.00055 * 359.97438 * 10 8 6 39 39 H 1.09006 * 109.47319 * 54.95483 * 11 10 8 40 40 H 1.08999 * 109.47868 * 294.95777 * 11 10 8 41 41 H 1.00900 * 110.99951 * 177.07459 * 13 12 11 42 42 H 1.09002 * 109.47042 * 55.69721 * 14 13 12 43 43 H 1.08998 * 109.46616 * 295.69633 * 14 13 12 44 44 H 0.96995 * 120.00666 * 0.02562 * 17 15 14 45 45 H 0.97003 * 119.99855 * 180.02562 * 21 20 18 46 46 H 1.09001 * 113.61440 * 203.75773 * 26 12 11 47 47 H 1.09000 * 113.61134 * 334.64800 * 26 12 11 48 48 H 1.08991 * 113.53982 * 270.81335 * 27 26 12 49 49 H 1.09000 * 113.66596 * 139.93024 * 27 26 12 50 50 H 1.08998 * 113.62041 * 25.34566 * 28 12 11 51 51 H 1.09002 * 113.61398 * 156.25065 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3047 1.3028 0.8296 5 6 2.9159 0.2823 1.9314 6 6 1.9974 -0.7056 1.1818 7 1 2.5673 -1.5800 0.8675 8 6 0.8612 -1.1291 2.0766 9 8 0.0261 -0.3196 2.4207 10 7 0.7729 -2.4074 2.4945 11 6 -0.3313 -2.8189 3.3648 12 6 -0.2689 -4.3313 3.5875 13 7 -0.1410 -5.0875 2.3346 14 6 -1.2712 -4.8141 1.4368 15 6 -1.0530 -5.5220 0.1245 16 8 -0.0540 -6.1883 -0.0464 17 7 -1.9674 -5.4138 -0.8597 18 6 -1.7687 -6.0574 -2.0538 19 1 -0.8796 -6.6514 -2.2056 20 6 -2.7112 -5.9455 -3.0687 21 7 -3.7927 -5.2223 -2.8840 22 14 -2.4400 -6.8218 -4.6959 23 1 -3.0357 -8.1806 -4.6315 24 1 -3.0857 -6.0496 -5.7877 25 1 -0.9833 -6.9320 -4.9621 26 6 0.7406 -4.7538 4.6678 27 6 -0.4049 -4.5998 5.6847 28 6 -1.3717 -4.8631 4.5180 29 1 -0.3633 0.6484 0.7973 30 1 -0.3634 0.3663 -0.9601 31 1 -0.3633 -1.0146 0.1629 32 1 2.2146 1.7039 -1.0183 33 1 1.2889 2.0593 0.4723 34 1 4.1302 0.9283 0.2241 35 1 3.5498 2.2722 1.2633 36 1 2.3745 0.7748 2.7392 37 1 3.8001 -0.2278 2.3136 38 1 1.4405 -3.0550 2.2190 39 1 -1.2802 -2.5596 2.8951 40 1 -0.2487 -2.3068 4.3235 41 1 -0.0545 -6.0763 2.5162 42 1 -1.3454 -3.7406 1.2627 43 1 -2.1934 -5.1726 1.8942 44 1 -2.7658 -4.8800 -0.7235 45 1 -4.4509 -5.1444 -3.5924 46 1 1.0930 -5.7795 4.5589 47 1 1.5515 -4.0396 4.8107 48 1 -0.4858 -3.5956 6.1005 49 1 -0.4199 -5.3777 6.4481 50 1 -2.2637 -4.2370 4.5403 51 1 -1.5980 -5.9187 4.3681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733713237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:32 Heat of formation + Delta-G solvation = -60.077730 kcal Electronic energy + Delta-G solvation = -30918.588814 eV Core-core repulsion = 26852.625620 eV Total energy + Delta-G solvation = -4065.963195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.85810 -40.90463 -39.82536 -38.53079 -36.04206 -35.44704 -34.54293 -33.23144 -33.07231 -30.91386 -28.79911 -27.94647 -26.72203 -26.62102 -25.98150 -23.66340 -22.84359 -22.21619 -21.07839 -21.04694 -19.90190 -19.70169 -18.34235 -18.12227 -17.35263 -17.00695 -16.75671 -16.52379 -16.41378 -16.03290 -15.90347 -15.80823 -15.63636 -15.05023 -14.98396 -14.54587 -14.37196 -14.32345 -13.84047 -13.75993 -13.54347 -13.46378 -13.23123 -13.06433 -12.93127 -12.90589 -12.54860 -12.42644 -12.42495 -12.29023 -12.14335 -12.07101 -11.94287 -11.75056 -11.52660 -11.49595 -11.24675 -11.02211 -10.34729 -10.09517 -10.01644 -9.33525 -9.27719 -8.46731 -5.95606 1.37343 1.40982 1.47526 1.54025 2.04477 2.13267 2.28840 2.87675 2.98256 3.20299 3.41851 3.51853 3.53789 3.61923 3.69088 3.72872 3.85075 3.92353 4.16482 4.23807 4.28071 4.35368 4.39997 4.45783 4.47850 4.51024 4.55688 4.58336 4.64704 4.79795 4.81688 4.85789 4.86063 4.92126 4.99110 5.05719 5.07245 5.10255 5.16361 5.26226 5.37862 5.40742 5.47583 5.80475 5.87949 5.88532 6.07860 6.38730 6.52710 6.58715 7.12125 7.17511 7.55369 8.09952 8.70778 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008028 B = 0.003836 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.955017 B = 7297.284575 C = 9940.485777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.523 5.523 3 C 0.033 3.967 4 C -0.117 4.117 5 C -0.121 4.121 6 C 0.048 3.952 7 H 0.107 0.893 8 C 0.501 3.499 9 O -0.577 6.577 10 N -0.702 5.702 11 C 0.152 3.848 12 C 0.078 3.922 13 N -0.655 5.655 14 C 0.072 3.928 15 C 0.441 3.559 16 O -0.616 6.616 17 N -0.575 5.575 18 C -0.332 4.332 19 H 0.081 0.919 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.992 3.008 23 H -0.269 1.269 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.118 4.118 27 C -0.127 4.127 28 C -0.168 4.168 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.415 0.585 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.352 0.648 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.393 0.607 45 H 0.277 0.723 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.069 0.931 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.362 10.024 16.028 21.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.248 5.248 3 C -0.095 4.095 4 C -0.155 4.155 5 C -0.159 4.159 6 C -0.063 4.063 7 H 0.125 0.875 8 C 0.288 3.712 9 O -0.457 6.457 10 N -0.353 5.353 11 C 0.027 3.973 12 C -0.014 4.014 13 N -0.287 5.287 14 C -0.061 4.061 15 C 0.228 3.772 16 O -0.502 6.502 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.099 0.901 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.816 3.184 23 H -0.195 1.195 24 H -0.197 1.197 25 H -0.196 1.196 26 C -0.156 4.156 27 C -0.165 4.165 28 C -0.208 4.208 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.251 0.749 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.173 0.827 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.226 0.774 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.088 0.912 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.833 10.370 15.268 21.401 hybrid contribution -1.718 -0.701 -0.098 1.859 sum 9.115 9.669 15.170 20.167 Atomic orbital electron populations 1.22727 0.87950 1.00737 1.01492 1.64038 1.08210 1.16242 1.36272 1.23274 0.96514 0.87979 1.01690 1.22710 0.96814 0.99998 0.96000 1.22734 0.99054 0.96147 0.98001 1.22764 0.94062 1.00143 0.89347 0.87468 1.21327 0.87157 0.82218 0.80542 1.90635 1.43653 1.52794 1.58663 1.45922 1.29118 1.10222 1.50055 1.21040 0.89686 0.92054 0.94484 1.22673 0.98775 0.92308 0.87640 1.59841 1.42045 1.13703 1.13107 1.21357 0.93856 1.00053 0.90829 1.20771 0.84203 0.85289 0.86903 1.90485 1.30647 1.46087 1.82981 1.41947 1.21066 1.45371 1.12770 1.19670 1.06914 1.28158 0.91375 0.90138 1.26045 0.94703 0.97797 1.02743 1.69685 1.10474 1.40299 1.35877 0.84937 0.78457 0.78149 0.76877 1.19486 1.19720 1.19639 1.23077 0.96736 1.02654 0.93116 1.22757 0.94798 1.02922 0.96036 1.23654 0.97967 1.01721 0.97432 0.92844 0.91598 0.94269 0.89024 0.93740 0.89230 0.88513 0.91650 0.87706 0.74872 0.93200 0.89908 0.82724 0.89793 0.92142 0.77396 0.91387 0.89151 0.90214 0.89280 0.89844 0.91205 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 8.18 127.69 1.04 1.65 16 2 N -0.52 -14.22 5.44 -890.93 -4.85 -19.07 16 3 C 0.03 0.68 6.73 86.77 0.58 1.27 16 4 C -0.12 -1.80 7.08 31.98 0.23 -1.57 16 5 C -0.12 -2.13 6.45 31.77 0.21 -1.92 16 6 C 0.05 1.15 3.84 44.51 0.17 1.33 16 7 H 0.11 2.46 7.96 -2.39 -0.02 2.44 16 8 C 0.50 13.81 4.95 87.66 0.43 14.24 16 9 O -0.58 -19.11 13.72 -3.03 -0.04 -19.15 16 10 N -0.70 -17.37 5.39 -463.05 -2.50 -19.87 16 11 C 0.15 3.54 4.30 86.38 0.37 3.91 16 12 C 0.08 1.63 0.74 4.05 0.00 1.64 16 13 N -0.65 -18.66 5.42 -471.54 -2.56 -21.22 16 14 C 0.07 2.47 5.77 85.55 0.49 2.97 16 15 C 0.44 20.98 7.83 87.66 0.69 21.66 16 16 O -0.62 -33.40 15.87 -3.06 -0.05 -33.45 16 17 N -0.57 -30.04 5.29 -306.98 -1.62 -31.67 16 18 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 19 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 20 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 21 N -0.92 -50.91 13.05 21.66 0.28 -50.63 16 22 Si 0.99 43.57 29.55 68.60 2.03 45.60 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C -0.12 -1.91 7.39 31.18 0.23 -1.68 16 27 C -0.13 -1.78 7.74 31.18 0.24 -1.54 16 28 C -0.17 -3.04 6.91 31.12 0.21 -2.82 16 29 H 0.05 1.75 5.80 -2.39 -0.01 1.73 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.39 6.93 -2.39 -0.02 1.37 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.04 0.98 7.62 -2.39 -0.02 0.96 16 34 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.31 7.73 -2.39 -0.02 1.29 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 38 H 0.41 9.99 8.03 -92.71 -0.74 9.24 16 39 H 0.05 1.38 7.15 -2.38 -0.02 1.36 16 40 H 0.08 1.74 7.34 -2.39 -0.02 1.73 16 41 H 0.35 10.33 8.50 -89.69 -0.76 9.56 16 42 H 0.08 2.94 6.58 -2.39 -0.02 2.93 16 43 H 0.06 1.90 7.84 -2.39 -0.02 1.89 16 44 H 0.39 19.94 7.90 -92.71 -0.73 19.21 16 45 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 46 H 0.09 1.46 8.10 -2.39 -0.02 1.45 16 47 H 0.08 1.20 8.10 -2.39 -0.02 1.18 16 48 H 0.09 1.14 7.64 -2.39 -0.02 1.12 16 49 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.07 1.28 8.10 -2.39 -0.02 1.27 16 51 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -70.07 401.92 -4.40 -74.47 By element: Atomic # 1 Polarization: 55.63 SS G_CDS: -1.28 Total: 54.36 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 6.19 Total: 20.62 kcal Atomic # 7 Polarization: -131.20 SS G_CDS: -11.24 Total: -142.45 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -0.09 Total: -52.60 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.07 -4.40 -74.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733713237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.393 kcal (2) G-P(sol) polarization free energy of solvation -70.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds