Wall clock time and date at job start Tue Mar 31 2020 21:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47016 * 2 1 4 4 C 1.36004 * 116.99806 * 179.97438 * 3 2 1 5 5 C 1.39690 * 125.67155 * 179.97438 * 4 3 2 6 6 C 1.37982 * 107.64038 * 180.02562 * 5 4 3 7 7 C 1.47169 * 126.43768 * 179.97438 * 6 5 4 8 8 O 1.21629 * 119.99630 * 9.75765 * 7 6 5 9 9 N 1.34776 * 120.00252 * 189.76459 * 7 6 5 10 10 C 1.46503 * 119.99687 * 359.97438 * 9 7 6 11 11 C 1.46496 * 120.00283 * 179.97438 * 9 7 6 12 12 C 1.53002 * 109.47048 * 89.99480 * 11 9 7 13 13 C 1.53000 * 109.46894 * 179.97438 * 12 11 9 14 14 H 1.08994 * 109.46922 * 55.00465 * 13 12 11 15 15 N 1.46500 * 109.47439 * 295.00196 * 13 12 11 16 16 C 1.36927 * 119.99956 * 155.00239 * 15 13 12 17 17 H 1.07998 * 120.00469 * 359.97438 * 16 15 13 18 18 C 1.38818 * 120.00187 * 180.02562 * 16 15 13 19 19 N 1.31618 * 119.99550 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00250 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47060 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47147 * 119.99703 * 20 18 16 23 23 H 1.48502 * 109.46943 * 239.99650 * 20 18 16 24 24 C 1.53009 * 109.46895 * 175.00231 * 13 12 11 25 25 C 1.53000 * 109.47035 * 64.99996 * 24 13 12 26 26 C 1.52996 * 109.46847 * 185.00251 * 24 13 12 27 27 N 1.36674 * 107.12449 * 0.24116 * 6 5 4 28 28 H 0.97002 * 126.09289 * 179.75578 * 27 6 5 29 29 N 1.31218 * 125.67175 * 0.04668 * 4 3 2 30 30 H 1.09003 * 109.46980 * 300.00052 * 1 2 3 31 31 H 1.08997 * 109.47235 * 59.99545 * 1 2 3 32 32 H 1.08997 * 109.47477 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46807 * 240.00473 * 2 1 3 34 34 H 1.09000 * 109.46788 * 120.00196 * 2 1 3 35 35 H 1.08006 * 126.18044 * 0.06274 * 5 4 3 36 36 H 1.08997 * 109.47113 * 276.27784 * 10 9 7 37 37 H 1.09005 * 109.46961 * 36.28004 * 10 9 7 38 38 H 1.09003 * 109.46788 * 156.27487 * 10 9 7 39 39 H 1.08998 * 109.47051 * 330.00129 * 11 9 7 40 40 H 1.08998 * 109.47022 * 209.99308 * 11 9 7 41 41 H 1.09006 * 109.47016 * 59.99885 * 12 11 9 42 42 H 1.08997 * 109.47384 * 300.00235 * 12 11 9 43 43 H 0.96998 * 119.99939 * 335.00058 * 15 13 12 44 44 H 0.97001 * 120.00202 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.46716 * 305.00281 * 24 13 12 46 46 H 1.09000 * 109.46653 * 59.99955 * 25 24 13 47 47 H 1.08999 * 109.46590 * 179.97438 * 25 24 13 48 48 H 1.08993 * 109.47221 * 300.00144 * 25 24 13 49 49 H 1.09003 * 109.46900 * 180.02562 * 26 24 13 50 50 H 1.09002 * 109.47016 * 299.99805 * 26 24 13 51 51 H 1.09001 * 109.47391 * 60.00398 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.0135 2.7572 0.0001 6 6 5.3702 2.5057 0.0003 7 6 6.4455 3.5105 -0.0005 8 8 6.1810 4.6843 0.1771 9 7 7.7233 3.1300 -0.1981 10 6 8.0418 1.7160 -0.4116 11 6 8.7936 4.1303 -0.1995 12 6 9.3333 4.3016 1.2219 13 6 10.4516 5.3458 1.2203 14 1 10.0826 6.2725 0.7809 15 7 11.5829 4.8487 0.4334 16 6 12.4563 5.7316 -0.1433 17 1 12.3109 6.7945 -0.0185 18 6 13.5280 5.2606 -0.8894 19 7 13.7048 3.9653 -1.0420 20 14 14.7198 6.4651 -1.6756 21 1 14.3030 7.8539 -1.3558 22 1 16.0869 6.2242 -1.1482 23 1 14.7168 6.2744 -3.1484 24 6 10.9062 5.6084 2.6575 25 6 11.5383 4.3392 3.2324 26 6 11.9352 6.7406 2.6680 27 7 5.5278 1.1481 -0.0046 28 1 6.3723 0.6708 -0.0090 29 7 4.2529 0.5689 0.0002 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.5456 3.7306 0.0003 36 1 8.1303 1.2141 0.5519 37 1 7.2474 1.2484 -0.9933 38 1 8.9847 1.6337 -0.9522 39 1 8.4006 5.0824 -0.5560 40 1 9.5984 3.8003 -0.8564 41 1 9.7263 3.3494 1.5786 42 1 8.5286 4.6315 1.8788 43 1 11.7133 3.8941 0.3210 44 1 14.4539 3.6361 -1.5630 45 1 10.0465 5.8930 3.2642 46 1 12.3979 4.0546 2.6256 47 1 11.8625 4.5265 4.2560 48 1 10.8052 3.5327 3.2248 49 1 12.2594 6.9273 3.6919 50 1 12.7948 6.4559 2.0613 51 1 11.4848 7.6448 2.2586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734077779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:07 Heat of formation + Delta-G solvation = 26.102330 kcal Electronic energy + Delta-G solvation = -29729.862091 eV Core-core repulsion = 25667.635944 eV Total energy + Delta-G solvation = -4062.226147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77477 -39.74759 -38.44605 -37.44038 -35.84489 -32.86913 -32.60728 -31.77154 -30.53802 -30.42961 -29.37685 -27.32126 -26.48780 -25.76900 -24.09920 -23.43030 -22.47394 -21.64818 -20.98702 -20.17480 -18.72980 -18.09295 -17.34243 -17.22576 -16.67617 -16.28979 -15.82730 -15.70377 -14.92562 -14.60943 -14.53603 -14.23689 -13.88867 -13.85538 -13.67275 -13.45472 -13.33992 -13.10238 -12.96208 -12.92414 -12.59987 -12.51309 -12.15961 -12.00861 -11.66034 -11.29844 -11.21053 -11.13983 -11.07008 -10.92601 -10.78064 -10.55455 -10.43248 -10.21496 -10.16793 -10.00853 -9.76764 -9.42386 -9.38801 -9.02056 -8.90829 -8.67156 -6.95893 -5.80029 -3.06184 0.86648 2.16341 2.30741 2.57738 3.02938 3.11614 3.40701 3.48369 3.49016 4.13597 4.39561 4.57637 4.60190 4.61559 4.68152 4.95777 4.97883 5.08591 5.14433 5.32150 5.34047 5.42157 5.44078 5.48228 5.50044 5.64225 5.69028 5.71688 5.84248 5.86624 5.97864 6.02372 6.05097 6.26431 6.32203 6.38525 6.48840 6.58933 6.63925 6.68701 6.74343 6.88554 6.91845 6.98130 7.09525 7.14822 7.28019 7.34174 7.71392 7.89490 8.39048 9.50958 10.07741 10.43534 11.42619 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020475 B = 0.002147 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.221980 B =13038.748167 C =13578.122696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.289 6.289 4 C 0.261 3.739 5 C -0.196 4.196 6 C 0.066 3.934 7 C 0.579 3.421 8 O -0.510 6.510 9 N -0.603 5.603 10 C 0.051 3.949 11 C 0.119 3.881 12 C -0.135 4.135 13 C 0.182 3.818 14 H 0.050 0.950 15 N -0.718 5.718 16 C -0.227 4.227 17 H 0.072 0.928 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.900 3.100 21 H -0.281 1.281 22 H -0.294 1.294 23 H -0.293 1.293 24 C -0.109 4.109 25 C -0.136 4.136 26 C -0.143 4.143 27 N -0.454 5.454 28 H 0.448 0.552 29 N -0.326 5.326 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.166 0.834 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.382 0.618 44 H 0.253 0.747 45 H 0.045 0.955 46 H 0.070 0.930 47 H 0.033 0.967 48 H 0.039 0.961 49 H 0.030 0.970 50 H 0.084 0.916 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.855 -9.386 3.256 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.193 6.193 4 C 0.058 3.942 5 C -0.227 4.227 6 C -0.064 4.064 7 C 0.364 3.636 8 O -0.383 6.383 9 N -0.336 5.336 10 C -0.093 4.093 11 C -0.002 4.002 12 C -0.174 4.174 13 C 0.072 3.928 14 H 0.068 0.932 15 N -0.359 5.359 16 C -0.358 4.358 17 H 0.090 0.910 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.732 3.268 21 H -0.206 1.206 22 H -0.221 1.221 23 H -0.221 1.221 24 C -0.130 4.130 25 C -0.194 4.194 26 C -0.200 4.200 27 N -0.180 5.180 28 H 0.304 0.696 29 N -0.168 5.168 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.184 0.816 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.216 0.784 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.052 0.948 48 H 0.058 0.942 49 H 0.049 0.951 50 H 0.103 0.897 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -20.003 -9.608 3.266 22.430 hybrid contribution 1.192 0.473 -0.405 1.346 sum -18.811 -9.134 2.860 21.106 Atomic orbital electron populations 1.21797 0.92624 1.02962 1.03574 1.22731 0.95486 0.81169 1.02266 1.86317 1.13835 1.29726 1.89462 1.20227 0.84382 0.91935 0.97637 1.21070 0.89667 0.98281 1.13665 1.21331 0.95411 0.84488 1.05171 1.17107 0.81381 0.87027 0.78092 1.90871 1.82236 1.16758 1.48432 1.47908 1.06648 1.08717 1.70279 1.22288 1.03499 0.81766 1.01729 1.21777 0.87917 0.91697 0.98784 1.22184 0.98528 1.00759 0.95927 1.20226 0.87267 0.94831 0.90522 0.93213 1.42417 1.27892 1.06232 1.59396 1.19272 1.03488 0.89676 1.23342 0.90960 1.24677 0.99284 0.95713 1.01402 1.69646 1.32079 1.11089 1.45488 0.86214 0.81309 0.80361 0.78947 1.20595 1.22086 1.22081 1.21669 0.97267 0.95636 0.98454 1.21720 1.01364 0.97084 0.99187 1.21853 1.01094 0.97172 0.99869 1.47429 1.07082 1.03735 1.59791 0.69608 1.77279 0.88663 1.20626 1.30282 0.91448 0.91457 0.90228 0.91733 0.91736 0.81599 0.91642 0.91167 0.88144 0.89654 0.88383 0.91895 0.92091 0.78421 0.93750 0.93613 0.91060 0.94763 0.94174 0.95103 0.89669 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.47 16 2 C 0.06 0.47 6.33 37.16 0.24 0.71 16 3 O -0.29 -3.21 10.22 -19.75 -0.20 -3.41 16 4 C 0.26 3.20 7.85 -17.27 -0.14 3.06 16 5 C -0.20 -2.46 10.65 -39.13 -0.42 -2.87 16 6 C 0.07 0.82 6.72 -82.18 -0.55 0.27 16 7 C 0.58 8.13 7.66 -12.63 -0.10 8.03 16 8 O -0.51 -8.80 16.49 5.25 0.09 -8.71 16 9 N -0.60 -7.58 2.87 -182.95 -0.53 -8.10 16 10 C 0.05 0.45 8.94 59.85 0.53 0.98 16 11 C 0.12 1.79 5.33 -4.04 -0.02 1.77 16 12 C -0.13 -2.09 4.71 -26.73 -0.13 -2.22 16 13 C 0.18 3.33 2.13 -67.93 -0.14 3.19 16 14 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 15 N -0.72 -15.70 3.54 -53.42 -0.19 -15.89 16 16 C -0.23 -5.68 7.75 -15.06 -0.12 -5.80 16 17 H 0.07 1.82 7.32 -52.49 -0.38 1.43 16 18 C -0.02 -0.41 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -26.19 13.06 55.49 0.72 -25.46 16 20 Si 0.90 21.54 29.55 -169.99 -5.02 16.52 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C -0.11 -1.89 2.74 -90.62 -0.25 -2.14 16 25 C -0.14 -2.30 8.74 37.16 0.32 -1.98 16 26 C -0.14 -2.60 8.46 37.16 0.31 -2.28 16 27 N -0.45 -4.75 6.41 33.41 0.21 -4.54 16 28 H 0.45 3.49 4.96 -182.65 -0.91 2.58 16 29 N -0.33 -3.86 12.05 30.46 0.37 -3.49 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.17 1.95 8.06 -52.48 -0.42 1.53 16 36 H 0.07 0.46 7.76 -51.93 -0.40 0.06 16 37 H 0.07 0.51 5.17 -51.93 -0.27 0.24 16 38 H 0.10 0.87 7.82 -51.93 -0.41 0.47 16 39 H 0.09 1.41 7.42 -51.93 -0.39 1.03 16 40 H 0.10 1.59 7.46 -51.93 -0.39 1.20 16 41 H 0.06 0.95 6.81 -51.93 -0.35 0.60 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.38 8.88 7.80 -40.82 -0.32 8.57 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 1.40 7.47 -51.93 -0.39 1.02 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.04 0.62 6.68 -51.93 -0.35 0.27 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.08 1.80 5.99 -51.93 -0.31 1.49 16 51 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 407.84 15.07 6.15 6.15 Total: -1.00 -30.29 407.84 -7.63 -37.92 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -9.07 Total: 9.27 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.16 Total: -0.26 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.59 Total: -57.48 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.12 Total: -12.12 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.29 -7.63 -37.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734077779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.024 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds