Wall clock time and date at job start Tue Mar 31 2020 21:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47016 * 2 1 4 4 C 1.36004 * 116.99806 * 179.97438 * 3 2 1 5 5 C 1.39690 * 125.67155 * 179.97438 * 4 3 2 6 6 C 1.37982 * 107.64038 * 180.02562 * 5 4 3 7 7 C 1.47169 * 126.43768 * 179.97438 * 6 5 4 8 8 O 1.21629 * 119.99630 * 9.75765 * 7 6 5 9 9 N 1.34776 * 120.00252 * 189.76459 * 7 6 5 10 10 C 1.46503 * 119.99687 * 359.97438 * 9 7 6 11 11 C 1.46496 * 120.00283 * 179.97438 * 9 7 6 12 12 C 1.53002 * 109.47048 * 89.99480 * 11 9 7 13 13 C 1.53000 * 109.46894 * 179.97438 * 12 11 9 14 14 H 1.08994 * 109.46922 * 55.00465 * 13 12 11 15 15 N 1.46500 * 109.47439 * 295.00196 * 13 12 11 16 16 C 1.36927 * 119.99956 * 155.00239 * 15 13 12 17 17 H 1.07998 * 120.00469 * 359.97438 * 16 15 13 18 18 C 1.38818 * 120.00187 * 180.02562 * 16 15 13 19 19 N 1.31618 * 119.99550 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00250 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47060 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47147 * 119.99703 * 20 18 16 23 23 H 1.48502 * 109.46943 * 239.99650 * 20 18 16 24 24 C 1.53009 * 109.46895 * 175.00231 * 13 12 11 25 25 C 1.53000 * 109.47035 * 64.99996 * 24 13 12 26 26 C 1.52996 * 109.46847 * 185.00251 * 24 13 12 27 27 N 1.36674 * 107.12449 * 0.24116 * 6 5 4 28 28 H 0.97002 * 126.09289 * 179.75578 * 27 6 5 29 29 N 1.31218 * 125.67175 * 0.04668 * 4 3 2 30 30 H 1.09003 * 109.46980 * 300.00052 * 1 2 3 31 31 H 1.08997 * 109.47235 * 59.99545 * 1 2 3 32 32 H 1.08997 * 109.47477 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46807 * 240.00473 * 2 1 3 34 34 H 1.09000 * 109.46788 * 120.00196 * 2 1 3 35 35 H 1.08006 * 126.18044 * 0.06274 * 5 4 3 36 36 H 1.08997 * 109.47113 * 276.27784 * 10 9 7 37 37 H 1.09005 * 109.46961 * 36.28004 * 10 9 7 38 38 H 1.09003 * 109.46788 * 156.27487 * 10 9 7 39 39 H 1.08998 * 109.47051 * 330.00129 * 11 9 7 40 40 H 1.08998 * 109.47022 * 209.99308 * 11 9 7 41 41 H 1.09006 * 109.47016 * 59.99885 * 12 11 9 42 42 H 1.08997 * 109.47384 * 300.00235 * 12 11 9 43 43 H 0.96998 * 119.99939 * 335.00058 * 15 13 12 44 44 H 0.97001 * 120.00202 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.46716 * 305.00281 * 24 13 12 46 46 H 1.09000 * 109.46653 * 59.99955 * 25 24 13 47 47 H 1.08999 * 109.46590 * 179.97438 * 25 24 13 48 48 H 1.08993 * 109.47221 * 300.00144 * 25 24 13 49 49 H 1.09003 * 109.46900 * 180.02562 * 26 24 13 50 50 H 1.09002 * 109.47016 * 299.99805 * 26 24 13 51 51 H 1.09001 * 109.47391 * 60.00398 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.0135 2.7572 0.0001 6 6 5.3702 2.5057 0.0003 7 6 6.4455 3.5105 -0.0005 8 8 6.1810 4.6843 0.1771 9 7 7.7233 3.1300 -0.1981 10 6 8.0418 1.7160 -0.4116 11 6 8.7936 4.1303 -0.1995 12 6 9.3333 4.3016 1.2219 13 6 10.4516 5.3458 1.2203 14 1 10.0826 6.2725 0.7809 15 7 11.5829 4.8487 0.4334 16 6 12.4563 5.7316 -0.1433 17 1 12.3109 6.7945 -0.0185 18 6 13.5280 5.2606 -0.8894 19 7 13.7048 3.9653 -1.0420 20 14 14.7198 6.4651 -1.6756 21 1 14.3030 7.8539 -1.3558 22 1 16.0869 6.2242 -1.1482 23 1 14.7168 6.2744 -3.1484 24 6 10.9062 5.6084 2.6575 25 6 11.5383 4.3392 3.2324 26 6 11.9352 6.7406 2.6680 27 7 5.5278 1.1481 -0.0046 28 1 6.3723 0.6708 -0.0090 29 7 4.2529 0.5689 0.0002 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.5456 3.7306 0.0003 36 1 8.1303 1.2141 0.5519 37 1 7.2474 1.2484 -0.9933 38 1 8.9847 1.6337 -0.9522 39 1 8.4006 5.0824 -0.5560 40 1 9.5984 3.8003 -0.8564 41 1 9.7263 3.3494 1.5786 42 1 8.5286 4.6315 1.8788 43 1 11.7133 3.8941 0.3210 44 1 14.4539 3.6361 -1.5630 45 1 10.0465 5.8930 3.2642 46 1 12.3979 4.0546 2.6256 47 1 11.8625 4.5265 4.2560 48 1 10.8052 3.5327 3.2248 49 1 12.2594 6.9273 3.6919 50 1 12.7948 6.4559 2.0613 51 1 11.4848 7.6448 2.2586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734077779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:06 Heat of formation + Delta-G solvation = 6.039290 kcal Electronic energy + Delta-G solvation = -29730.732090 eV Core-core repulsion = 25667.635944 eV Total energy + Delta-G solvation = -4063.096146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.71400 -40.80558 -39.31822 -38.90037 -36.98209 -34.72529 -33.54878 -32.74437 -31.79732 -31.31422 -30.87607 -28.29947 -27.84976 -27.15381 -25.31718 -24.70569 -23.64542 -22.52467 -22.13760 -21.18314 -20.23435 -19.16906 -19.03996 -18.19285 -17.55223 -17.35608 -16.80804 -16.73454 -16.55770 -15.94091 -15.61399 -15.44020 -15.15548 -15.06206 -14.83647 -14.66470 -14.54691 -14.28922 -14.00060 -13.92885 -13.61187 -13.41586 -13.18765 -12.94724 -12.89489 -12.80865 -12.73923 -12.63879 -12.34795 -12.10702 -12.05079 -12.01020 -11.83745 -11.80406 -11.69183 -11.35352 -11.16092 -11.12673 -10.80989 -10.34231 -9.93938 -9.71797 -8.84144 -7.83930 -5.06370 -0.12376 1.30739 1.36036 1.48352 1.51902 1.58201 1.58700 1.99183 2.26761 2.62776 3.21067 3.49860 3.50042 3.83943 3.95794 4.00442 4.06592 4.12801 4.15687 4.21833 4.30182 4.34849 4.40185 4.41421 4.43603 4.53251 4.64355 4.69587 4.74876 4.80205 4.91299 4.95497 4.97272 5.01101 5.04948 5.09287 5.19153 5.24248 5.30355 5.38419 5.43709 5.46197 5.63313 5.67118 5.78147 5.83475 6.10993 6.16719 6.39170 6.39383 6.80724 7.47536 8.22224 8.48422 9.39228 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.020475 B = 0.002147 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.221980 B =13038.748167 C =13578.122696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.300 6.300 4 C 0.255 3.745 5 C -0.207 4.207 6 C 0.066 3.934 7 C 0.580 3.420 8 O -0.549 6.549 9 N -0.598 5.598 10 C 0.043 3.957 11 C 0.129 3.871 12 C -0.120 4.120 13 C 0.180 3.820 14 H 0.036 0.964 15 N -0.718 5.718 16 C -0.207 4.207 17 H 0.071 0.929 18 C -0.072 4.072 19 N -0.964 5.964 20 Si 0.950 3.050 21 H -0.272 1.272 22 H -0.301 1.301 23 H -0.300 1.300 24 C -0.108 4.108 25 C -0.128 4.128 26 C -0.140 4.140 27 N -0.438 5.438 28 H 0.459 0.541 29 N -0.327 5.327 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.167 0.833 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.376 0.624 44 H 0.245 0.755 45 H 0.068 0.932 46 H 0.038 0.962 47 H 0.049 0.951 48 H 0.055 0.945 49 H 0.049 0.951 50 H 0.051 0.949 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.180 -10.374 4.274 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.204 6.204 4 C 0.052 3.948 5 C -0.239 4.239 6 C -0.066 4.066 7 C 0.366 3.634 8 O -0.425 6.425 9 N -0.329 5.329 10 C -0.100 4.100 11 C 0.007 3.993 12 C -0.159 4.159 13 C 0.071 3.929 14 H 0.054 0.946 15 N -0.358 5.358 16 C -0.339 4.339 17 H 0.089 0.911 18 C -0.265 4.265 19 N -0.616 5.616 20 Si 0.782 3.218 21 H -0.197 1.197 22 H -0.229 1.229 23 H -0.228 1.228 24 C -0.129 4.129 25 C -0.185 4.185 26 C -0.197 4.197 27 N -0.166 5.166 28 H 0.318 0.682 29 N -0.170 5.170 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.184 0.816 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.209 0.791 44 H 0.054 0.946 45 H 0.086 0.914 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -21.345 -10.613 4.302 24.223 hybrid contribution 1.515 0.774 -0.669 1.828 sum -19.830 -9.839 3.633 22.433 Atomic orbital electron populations 1.21824 0.90749 1.04394 1.03501 1.22990 0.96969 0.79877 1.02434 1.86321 1.13219 1.31596 1.89301 1.20304 0.84975 0.91763 0.97718 1.21214 0.90032 0.98738 1.13880 1.20993 0.94770 0.84852 1.05937 1.17263 0.81853 0.86769 0.77469 1.90849 1.82869 1.18376 1.50411 1.47875 1.05663 1.09898 1.69468 1.22565 1.04262 0.79585 1.03541 1.21476 0.88030 0.91616 0.98212 1.22010 0.97450 1.00188 0.96252 1.20359 0.86877 0.95071 0.90626 0.94566 1.42447 1.28288 1.05486 1.59564 1.19472 1.03010 0.90000 1.21417 0.91148 1.25216 1.01193 0.96819 1.03230 1.69755 1.32596 1.12223 1.47024 0.85397 0.79415 0.79343 0.77648 1.19713 1.22909 1.22802 1.21638 0.97789 0.95706 0.97731 1.21622 1.00434 0.97179 0.99304 1.21789 1.00006 0.97507 1.00389 1.47441 1.07345 1.03006 1.58832 0.68215 1.77265 0.88953 1.20579 1.30190 0.91509 0.91521 0.88013 0.91533 0.91549 0.81550 0.89151 0.89522 0.87857 0.91566 0.89569 0.90877 0.91524 0.79140 0.94559 0.91411 0.94283 0.93217 0.92555 0.93187 0.93006 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 71.98 0.74 -0.66 16 2 C 0.05 0.77 6.33 71.98 0.46 1.22 16 3 O -0.30 -6.37 10.22 -93.59 -0.96 -7.33 16 4 C 0.26 5.97 7.85 85.14 0.67 6.64 16 5 C -0.21 -5.06 10.65 22.56 0.24 -4.82 16 6 C 0.07 1.54 6.72 40.68 0.27 1.81 16 7 C 0.58 15.81 7.66 86.59 0.66 16.48 16 8 O -0.55 -18.95 16.49 -4.12 -0.07 -19.02 16 9 N -0.60 -14.28 2.87 -850.96 -2.44 -16.72 16 10 C 0.04 0.65 8.94 127.77 1.14 1.80 16 11 C 0.13 3.80 5.33 86.38 0.46 4.26 16 12 C -0.12 -3.55 4.71 30.59 0.14 -3.40 16 13 C 0.18 6.43 2.13 44.99 0.10 6.53 16 14 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 15 N -0.72 -31.37 3.54 -322.94 -1.14 -32.51 16 16 C -0.21 -10.41 7.75 84.04 0.65 -9.76 16 17 H 0.07 3.54 7.32 -2.91 -0.02 3.52 16 18 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 19 N -0.96 -54.87 13.06 21.65 0.28 -54.59 16 20 Si 0.95 44.87 29.55 68.60 2.03 46.90 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 24 C -0.11 -3.54 2.74 -10.79 -0.03 -3.57 16 25 C -0.13 -4.07 8.74 71.98 0.63 -3.44 16 26 C -0.14 -4.91 8.46 71.98 0.61 -4.30 16 27 N -0.44 -8.27 6.41 -48.20 -0.31 -8.58 16 28 H 0.46 5.91 4.96 -213.36 -1.06 4.85 16 29 N -0.33 -7.16 12.05 -170.76 -2.06 -9.21 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.09 0.98 7.76 -2.39 -0.02 0.97 16 37 H 0.09 1.05 5.17 -2.38 -0.01 1.04 16 38 H 0.10 1.60 7.82 -2.39 -0.02 1.58 16 39 H 0.07 2.22 7.42 -2.39 -0.02 2.20 16 40 H 0.09 2.78 7.46 -2.39 -0.02 2.76 16 41 H 0.07 2.04 6.81 -2.38 -0.02 2.02 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.38 17.52 7.80 -92.71 -0.72 16.79 16 44 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 45 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.04 1.50 7.47 -2.39 -0.02 1.48 16 47 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.06 1.59 6.68 -2.39 -0.02 1.57 16 49 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.05 2.17 5.99 -2.39 -0.01 2.15 16 51 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -65.38 407.84 1.70 -63.68 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.84 Total: 32.04 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 7.21 Total: 5.33 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -5.67 Total: -121.61 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -1.02 Total: -26.35 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.38 1.70 -63.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734077779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.718 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds